View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14258_low_18 (Length: 404)
Name: NF14258_low_18
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14258_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 42 - 347
Target Start/End: Original strand, 29308522 - 29308833
Alignment:
| Q |
42 |
aattgtttcccagttgcatagattgagaatgagaggttgacttaaaataccaaagttccttagnnnnnnnncaatcgcatgttttggtcccgaacaaaat |
141 |
Q |
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| T |
29308522 |
aattgtttcccagttgcatagattgagaatgagaggttgacttaaaataccaaagttccttagaaaaaaaacaatcacatgttttggtcccgaacaaaat |
29308621 |
T |
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| Q |
142 |
tctatgaccaaatcatttgaatcctaaacattatatattctatttcat------gacccacattataattattttgttgacttgtagatatacacattac |
235 |
Q |
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| T |
29308622 |
tctatgaccaaatcatttgaatcctaaacattatatattctatttcatactcatgacccacattataattattttgtggacttgtagatatacacattac |
29308721 |
T |
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| Q |
236 |
acaaatataaatattaaaagtattgaaaaccactagtaataaccattgtttggacacgagacatgtcaagtatctacagtgacaagttatggtgctaaaa |
335 |
Q |
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| T |
29308722 |
acaaatataaatattaaaagtattgaaaaccactagtaataaccattgtttggacacgagacatgtcaagtatcgacagtgacaagttatgatgctaaaa |
29308821 |
T |
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| Q |
336 |
ttatatgattgt |
347 |
Q |
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|||||||||||| |
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| T |
29308822 |
ttatatgattgt |
29308833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 33 - 188
Target Start/End: Original strand, 29301807 - 29301964
Alignment:
| Q |
33 |
acatcatcaaattgtttcccagttgcatagattgagaatgagaggttgacttaaaataccaaagttccttag---nnnnnnnncaatcgcatgttttggt |
129 |
Q |
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| T |
29301807 |
acataatccaattctttcccacttgcatagattgacaatgagaggttgacttaaaataccaaagttccttagaaagaaagaaaaaatcacatgttttgg- |
29301905 |
T |
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| Q |
130 |
cccgaacaaaattctatgaccaaatcatttgaatcctaaacattatatattctatttca |
188 |
Q |
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| T |
29301906 |
cccgaacaaaattctatgaccaaagcatttgaatccaaaacactatatattatatttca |
29301964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 29310537 - 29310582
Alignment:
| Q |
350 |
tggtgtcttagctgactacatgtttttgtttttggagtagaattat |
395 |
Q |
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| T |
29310537 |
tggtgtcttagctgacaacatgtttttgtttttggagtaaaattat |
29310582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 29302656 - 29302715
Alignment:
| Q |
288 |
gacacgagacatgtcaa-gtatctacagtgacaagttatggtgctaaaattatatgattg |
346 |
Q |
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| T |
29302656 |
gacacgagacatgtcaaagtatcgacaatgacatgttatggtgctgaagttatatgattg |
29302715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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