View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14258_low_28 (Length: 281)
Name: NF14258_low_28
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14258_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 113 - 255
Target Start/End: Original strand, 50466151 - 50466293
Alignment:
| Q |
113 |
aacatactaataattactattaaaaatatgcaaacaaattgtttgacaattgtgttcagaatatctagaactactttacaattaagcagatttattttgt |
212 |
Q |
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| T |
50466151 |
aacatactaatatttactattaaaaatatgcaaataaattgtttgacaattgtgttcagaatatttagaactactttacaattaagcagatttattttgt |
50466250 |
T |
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| Q |
213 |
aggaaccgctagatttgaagagataaattccaccgcccatgca |
255 |
Q |
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| T |
50466251 |
aggaaccgttagatttgaagagataaattccaccgcccatgca |
50466293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 50466055 - 50466121
Alignment:
| Q |
17 |
aattttatgtgcaaaatgcacacaaatttgggttgtggtttgaggtacaggttaataaattggaggt |
83 |
Q |
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| T |
50466055 |
aattttatgtgcaaaatgcacacaaatttgggttgtggtttgaggtacaggttaataaattggaggt |
50466121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 51019920 - 51019953
Alignment:
| Q |
105 |
taacaattaacatactaataattactattaaaaa |
138 |
Q |
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| T |
51019920 |
taacaattaacatactaatatttactattaaaaa |
51019953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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