View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14258_low_3 (Length: 640)
Name: NF14258_low_3
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14258_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 3343320 - 3342898
Alignment:
| Q |
1 |
tttcttgaacttgttctaactgatggattatgtgatttgcctaagcctagcaaacaacttcatctgtcatgcttgaaagtttttcagatgtttttcaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3343320 |
tttcttgaacttgttctaactgatggattatgtgatttgcctaagcctagcaaacaacttcatctgtcatgcttgaaagtttttcagatgtttttcaact |
3343221 |
T |
|
| Q |
101 |
ccaaaaacagatttgactctaatacagaattggtggaggatataaacaaagcaatatatcttcctttgaatagaactacgaagtgtctttcatctcaagc |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3343220 |
ccaaaaacagatttgactccaatacagaattggtggaggatataaacaaagcaatatatcttcctttgaatagaactacgaagtgtctttcatctcaagc |
3343121 |
T |
|
| Q |
201 |
attcccaaagaagaaacatattgtagcaaatcttcatgtaaatttcccattcaaacataatagtaggataaatttcaccggaatgaggttcgtgacaccc |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3343120 |
attcccaaagaagaaacatattgtagcaaatcttaatgtaaatttcccattcaaacataatagtaggataaatttcaccggaatgaggttcgtgacaccc |
3343021 |
T |
|
| Q |
301 |
aaagcccggcttggatac---atttaagtcaaataaaagaagagggaatgatataagataagataaatgtggaaatatgtttctacgtagatttaattgt |
397 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3343020 |
aaagtccggcttggatacataatttaagtcaaataaaagaagagggaatgat-----ataagataaatgtggaaatatgtttctacgtagatttaattgt |
3342926 |
T |
|
| Q |
398 |
aaacattatacaagataagatacttact |
425 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
3342925 |
aaacattatacaagataagatacttact |
3342898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 4 - 330
Target Start/End: Complemental strand, 3367805 - 3367479
Alignment:
| Q |
4 |
cttgaacttgttctaactgatggattatgtgatttgcctaagcctagcaaacaacttcatctgtcatgcttgaaagtttttcagatgtttttcaactcca |
103 |
Q |
| |
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|||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||| |
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| T |
3367805 |
cttgaacttgttctaattgatggattgtgtgatttacctaaacctagcaaacaacttcatctcgcatgcttgaaagtttttgagatgttttacaactcca |
3367706 |
T |
|
| Q |
104 |
aaaacagatttgactctaatacagaattggtggaggatataaacaaagcaatatatcttcctttgaatagaactacgaagtgtctttcatctcaagcatt |
203 |
Q |
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|||| |||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||| |||||| ||||| ||||| |||| |
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| T |
3367705 |
aaaatagatttgattctaatacagatttggttgaagatataaacaaagcaatatatcttcctttgggtagaactacaaagtgtttttcacctcaaacatt |
3367606 |
T |
|
| Q |
204 |
cccaaagaagaaacatattgtagcaaatcttcatgtaaatttcccattcaaacataatagtaggataaatttcaccggaatgaggttcgtgacacccaaa |
303 |
Q |
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||||||||||||||||| | || ||| | ||| || |||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||| ||| |
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| T |
3367605 |
cccaaagaagaaacatactatatcaataatccataataacttcccattcaaacataatagtaagataggtttcaccagaatgaggttcatgacacctaaa |
3367506 |
T |
|
| Q |
304 |
gcccggcttggatacatttaagtcaaa |
330 |
Q |
| |
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| ||||||||| ||||||| ||||| |
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|
| T |
3367505 |
gttgggcttggattcatttaaatcaaa |
3367479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 429 - 600
Target Start/End: Complemental strand, 3342855 - 3342687
Alignment:
| Q |
429 |
tttgtcctctcttcaattctctttctttgtttatgtattgtgatgagaggttaacgtttgggattcaaatgtttatggattatgtttgtctataggtggt |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3342855 |
tttgtcctctcttcaattctctttctttgtttatgtattgtgataagaggttaacgtttgggattcaaatgtttatggattatgtttgtctata---ggt |
3342759 |
T |
|
| Q |
529 |
tgtgaaatattaggattgttattgatatggtggatgtgtaagaaaataatgttccaaaacatgtagtataat |
600 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3342758 |
tgtgaaatagtaggattgttattgatatggtggatgtgtaagaaaataatgttccaaaacatgtagtataat |
3342687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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