View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14258_low_36 (Length: 249)

Name: NF14258_low_36
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14258_low_36
NF14258_low_36
[»] chr1 (7 HSPs)
chr1 (13-224)||(50466313-50466525)
chr1 (158-224)||(47417788-47417854)
chr1 (153-224)||(9639807-9639878)
chr1 (158-211)||(26525539-26525592)
chr1 (164-198)||(52592443-52592477)
chr1 (152-197)||(45224296-45224341)
chr1 (142-198)||(31998362-31998418)
[»] chr7 (7 HSPs)
chr7 (148-223)||(31525370-31525445)
chr7 (153-215)||(27270235-27270297)
chr7 (152-198)||(42753443-42753489)
chr7 (159-224)||(12212280-12212344)
chr7 (153-210)||(47960896-47960953)
chr7 (153-193)||(22062434-22062474)
chr7 (153-213)||(27263341-27263401)
[»] chr4 (3 HSPs)
chr4 (153-215)||(4513445-4513507)
chr4 (153-224)||(29908056-29908127)
chr4 (159-213)||(41536928-41536982)
[»] chr5 (3 HSPs)
chr5 (169-216)||(1745712-1745759)
chr5 (164-213)||(2053037-2053086)
chr5 (164-224)||(26400202-26400262)
[»] chr3 (1 HSPs)
chr3 (168-223)||(14741809-14741864)
[»] chr2 (3 HSPs)
chr2 (150-224)||(32902062-32902136)
chr2 (151-192)||(12129996-12130037)
chr2 (168-224)||(4056805-4056861)
[»] scaffold0262 (1 HSPs)
scaffold0262 (153-198)||(15946-15991)
[»] chr8 (6 HSPs)
chr8 (175-216)||(33620920-33620961)
chr8 (168-224)||(5179808-5179864)
chr8 (153-221)||(12249478-12249546)
chr8 (150-198)||(32421566-32421614)
chr8 (168-208)||(42982900-42982940)
chr8 (169-213)||(44068564-44068608)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 50466525 - 50466313
Alignment:
Q  13 taattctaagtgttcataattttacttatttaaaatcaattttgattctttctctctctaaacttcttnnnnnnn-taattaattctcaaaaaatagaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||        |||||||||||| |||||||||||    
T  50466525 taattctaagtgttcataattttacttatttaaaatcaattttaattctctctctctctaaacttcttaaaaataataattaattctctaaaaatagaat 50466426  T
Q  112 caaacatacattgacaatttagtgtttagaattggattcttgtgaccttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||    
T  50466425 caaacatacattgacaatttagtgtttagaattggattcttgtgaccttaactcaattggtaaggataatgtataatatatacaagggtcggagttcgaa 50466326  T
Q  212 cctcggtcaccac 224  Q
    |||||||||||||    
T  50466325 cctcggtcaccac 50466313  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 47417788 - 47417854
Alignment:
Q  158 cttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcaccac 224  Q
    ||||| ||||||||| ||||||||  ||||||||| ||||| ||||||||| |||||||||||||||    
T  47417788 cttaactcaattggttaggacaatgcataatatatgcaaggttcggagttcaaacctcggtcaccac 47417854  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 9639878 - 9639807
Alignment:
Q  153 gtgaccttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcaccac 224  Q
    |||| ||||| ||| ||||||||||||||  ||||||||| |||||  ||||||||||||||||| ||||||    
T  9639878 gtgagcttaactcacttggtaaggacaatgcataatatatgcaaggtccggagttcgaacctcggacaccac 9639807  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 26525592 - 26525539
Alignment:
Q  158 cttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaa 211  Q
    ||||||||||||||||||||||||| |||||||||| || | ||| ||||||||    
T  26525592 cttaattcaattggtaaggacaatacataatatataaaacgttcgtagttcgaa 26525539  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 52592477 - 52592443
Alignment:
Q  164 tcaattggtaaggacaatatataatatatacaagg 198  Q
    ||||||||||||||||||||||||||||| |||||    
T  52592477 tcaattggtaaggacaatatataatatatgcaagg 52592443  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 45224341 - 45224296
Alignment:
Q  152 tgtgaccttaattcaattggtaaggacaatatataatatatacaag 197  Q
    ||||| ||||| ||||||||||||||||||  ||||||||||||||    
T  45224341 tgtgagcttaactcaattggtaaggacaattcataatatatacaag 45224296  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 31998362 - 31998418
Alignment:
Q  142 attggattcttgtgaccttaattcaattggtaaggacaatatataatatatacaagg 198  Q
    |||| ||||| |||| ||||| ||| |||||||| |||||||||||||||| |||||    
T  31998362 attgtattctcgtgagcttaaatcagttggtaagaacaatatataatatatgcaagg 31998418  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 31525445 - 31525370
Alignment:
Q  148 ttcttgtgaccttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcacca 223  Q
    |||||||||  ||| ||||||||||| | |||||||||||||||||||||| |||  ||||||||||||| |||||    
T  31525445 ttcttgtgagtttagttcaattggtatgaacaatatataatatatacaaggttcgaggttcgaacctcggccacca 31525370  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 27270235 - 27270297
Alignment:
Q  153 gtgaccttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacctc 215  Q
    |||| ||||| ||| |||||| |||||||  ||||||||| ||||| ||||||||||||||||    
T  27270235 gtgaacttaactcagttggtatggacaatgcataatatatgcaaggttcggagttcgaacctc 27270297  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 42753489 - 42753443
Alignment:
Q  152 tgtgaccttaattcaattggtaaggacaatatataatatatacaagg 198  Q
    ||||| ||||| |||||||||| ||||||| ||||||||||||||||    
T  42753489 tgtgagcttaactcaattggtagggacaatgtataatatatacaagg 42753443  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 12212280 - 12212344
Alignment:
Q  159 ttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcaccac 224  Q
    |||||||| ||||||||||| || |||||||||| ||||| || | ||||||||||||| ||||||    
T  12212280 ttaattcagttggtaaggacgatgtataatatatgcaagg-tcagggttcgaacctcggacaccac 12212344  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 47960896 - 47960953
Alignment:
Q  153 gtgaccttaattcaattggtaaggacaatatataatatatacaaggatcggagttcga 210  Q
    |||| ||||| ||||||| ||||||||||| ||||||||| | ||| |||||||||||    
T  47960896 gtgagcttaactcaattgataaggacaatacataatatatgcgaggttcggagttcga 47960953  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 22062474 - 22062434
Alignment:
Q  153 gtgaccttaattcaattggtaaggacaatatataatatata 193  Q
    |||| ||||| ||||||||||||||||||| ||||||||||    
T  22062474 gtgagcttaactcaattggtaaggacaatacataatatata 22062434  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 27263341 - 27263401
Alignment:
Q  153 gtgaccttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacc 213  Q
    |||| ||||| ||| |||||| |||||||  ||||||||| ||||| ||||||||||||||    
T  27263341 gtgaacttaactcagttggtatggacaatgcataatatatgcaaggttcggagttcgaacc 27263401  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 4513507 - 4513445
Alignment:
Q  153 gtgaccttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacctc 215  Q
    |||| |||||||||||||||| ||||||| ||||||||||| |||| | | ||||||||||||    
T  4513507 gtgaacttaattcaattggtagggacaatgtataatatatagaagggttgaagttcgaacctc 4513445  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 29908056 - 29908127
Alignment:
Q  153 gtgaccttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcaccac 224  Q
    |||| ||||| ||| ||||||||||||||  ||||||||| |||||  |||||||| ||||||| |||||||    
T  29908056 gtgagcttaactcagttggtaaggacaatgcataatatatgcaaggtccggagttcaaacctcgatcaccac 29908127  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 41536928 - 41536982
Alignment:
Q  159 ttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacc 213  Q
    |||| ||||||| ||||||||||| ||||||||| ||||| ||| ||||||||||    
T  41536928 ttaactcaattgataaggacaatacataatatatgcaaggttcgaagttcgaacc 41536982  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 1745759 - 1745712
Alignment:
Q  169 tggtaaggacaatatataatatatacaaggatcggagttcgaacctcg 216  Q
    ||||||||||||||||||| |||||||||| ||||||||  |||||||    
T  1745759 tggtaaggacaatatataaaatatacaaggttcggagtttaaacctcg 1745712  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 2053037 - 2053086
Alignment:
Q  164 tcaattggtaaggacaatatataatatatacaaggatcggagttcgaacc 213  Q
    ||||||||||||||||||  |||| ||||||||||  |||||||||||||    
T  2053037 tcaattggtaaggacaatgcataaaatatacaaggtccggagttcgaacc 2053086  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 26400262 - 26400202
Alignment:
Q  164 tcaattggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcaccac 224  Q
    ||||||||||||||||||  ||| ||||||||| | ||| |||||||| ||||| ||||||    
T  26400262 tcaattggtaaggacaatgcatagtatatacaaagttcgaagttcgaatctcggccaccac 26400202  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 14741809 - 14741864
Alignment:
Q  168 ttggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcacca 223  Q
    ||||||||||||||  ||||||||| ||||| | |||||||||||||||| |||||    
T  14741809 ttggtaaggacaatgcataatatatgcaaggtttggagttcgaacctcggacacca 14741864  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 32902062 - 32902136
Alignment:
Q  150 cttgtgaccttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcaccac 224  Q
    ||||||| |||| |||| | |||| ||||||||||||||||||  ||||  || ||||| |||||||||||||||    
T  32902062 cttgtgaacttagttcagtcggtagggacaatatataatatatgtaaggtacgaagttcaaacctcggtcaccac 32902136  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 12130037 - 12129996
Alignment:
Q  151 ttgtgaccttaattcaattggtaaggacaatatataatatat 192  Q
    |||||| ||||| |||||||||||||||||||||| ||||||    
T  12130037 ttgtgagcttaactcaattggtaaggacaatatattatatat 12129996  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 4056805 - 4056861
Alignment:
Q  168 ttggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcaccac 224  Q
    ||||||||||||||  ||||||||| |||||  ||||||||||| ||||| ||||||    
T  4056805 ttggtaaggacaatgcataatatatgcaaggtccggagttcgaatctcgggcaccac 4056861  T

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Target: scaffold0262 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 15991 - 15946
Alignment:
Q  153 gtgaccttaattcaattggtaaggacaatatataatatatacaagg 198  Q
    |||| ||||| |||||||||||||||||| |||||||||| |||||    
T  15991 gtgagcttaactcaattggtaaggacaatgtataatatatgcaagg 15946  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 33620920 - 33620961
Alignment:
Q  175 ggacaatatataatatatacaaggatcggagttcgaacctcg 216  Q
    |||||||  ||||||||||||||| |||||||||||||||||    
T  33620920 ggacaatgcataatatatacaaggttcggagttcgaacctcg 33620961  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 5179808 - 5179864
Alignment:
Q  168 ttggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcaccac 224  Q
    ||||||||||||||  ||||||||||||||| |||| |||| ||| |||| ||||||    
T  5179808 ttggtaaggacaatgcataatatatacaaggttcggggttcaaacttcggccaccac 5179864  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 12249546 - 12249478
Alignment:
Q  153 gtgaccttaattcaattggtaaggacaatatataatatatacaaggatcggagttcgaacctcggtcac 221  Q
    |||| ||||| ||||||||||| || ||| |||||||||| ||||| |||| |||| ||| ||||||||    
T  12249546 gtgagcttaactcaattggtaaagataatgtataatatatgcaaggttcggtgttcaaacatcggtcac 12249478  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 32421566 - 32421614
Alignment:
Q  150 cttgtgaccttaattcaattggtaaggacaatatataatatatacaagg 198  Q
    ||||||| ||||| ||| |||||| |||||||||||||||||| |||||    
T  32421566 cttgtgagcttaactcagttggtatggacaatatataatatatgcaagg 32421614  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 42982900 - 42982940
Alignment:
Q  168 ttggtaaggacaatatataatatatacaaggatcggagttc 208  Q
    ||||||||||||||| ||||||||||||||| ||| |||||    
T  42982900 ttggtaaggacaatacataatatatacaaggttcgaagttc 42982940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 44068564 - 44068608
Alignment:
Q  169 tggtaaggacaatatataatatatacaaggatcggagttcgaacc 213  Q
    |||||||||||||||||||||||| |||||   ||||||||||||    
T  44068564 tggtaaggacaatatataatatatgcaaggtcgggagttcgaacc 44068608  T

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