View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14258_low_39 (Length: 240)
Name: NF14258_low_39
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14258_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 6356161 - 6355935
Alignment:
| Q |
1 |
ctataaatactaaccacccctatggttacaagacacaagcctttctttcatttaccaaatatagtgtaatacatttaaagcatattcaaagatgttttct |
100 |
Q |
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| T |
6356161 |
ctataaatactaaccacccctatggttacaagacacaagcctttctttcatttaccatatatagtgtaatacatttaaagcatattcaaagatgttttct |
6356062 |
T |
|
| Q |
101 |
ggtgtaacaggtctctttgatagaggccaaaagttgaagggaactgtggtgttgatgcaaaagaatactttggatatcaacgccctcactgctgctaaaa |
200 |
Q |
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| T |
6356061 |
ggtgtaacaggtctctttgatagaggccaaaagttgaagggaactgtggtgttgatgcaaaagaatactttggatatcaacgccctcactgctgctaaaa |
6355962 |
T |
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| Q |
201 |
gccctactggtatcattggtggtgcct |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
6355961 |
gccctactggtatcattggtggtgcct |
6355935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 7463262 - 7463037
Alignment:
| Q |
1 |
ctataaatactaaccacccctatggttacaagacacaagcctttctttcatttaccaaatatagtgtaatacatttaaagcatattcaaagatgttttct |
100 |
Q |
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||||| ||||||| |||||| |||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7463262 |
ctatagatactaagcacccccatggttacaagacacaggcatttctttcatttaccaaatatagtgtaatatatttaaagcatattcaaagatgttttca |
7463163 |
T |
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| Q |
101 |
ggtgtaacaggtctctttgatagaggccaaaagttgaagggaactgtggtgttgatgcaaaagaatactttggatatcaacgccctcactgctgctaaaa |
200 |
Q |
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| T |
7463162 |
ggggtaactggtctctttgatagaggccaaaagttgaagggaactgtggtgttgatgcaaaagaatgcgttggacattgatgccctaactgcaactaata |
7463063 |
T |
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| Q |
201 |
gccctactggtatcattggtggtgcc |
226 |
Q |
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| T |
7463062 |
accctacaggtatcattggtggtgcc |
7463037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 6365591 - 6365430
Alignment:
| Q |
1 |
ctataaatactaaccacccctatggttacaagacacaagcctttctttcatttaccaaatatagtgtaatacatttaaagcatattcaaagatgttttct |
100 |
Q |
| |
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||||||||||||| || ||| |||| |||| |||||||| |||||||||||||||||| |||||||||||||||| ||||| | ||||||| ||| |
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| T |
6365591 |
ctataaatactaagcatccccttggtaacaaaacacaagcttttctttcatttaccaaagatagtgtaatacattt-aagca---ttaaagatgagttca |
6365496 |
T |
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| Q |
101 |
ggtgtaacaggtctctttgatagaggccaaaagttgaagggaactgtggtgttgatgcaaaagaat |
166 |
Q |
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| T |
6365495 |
ttggtgaaaggtctctttgataagcaccaaaaggtgaagggaactgtggtgttgatgcaaaagaat |
6365430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 6393169 - 6393093
Alignment:
| Q |
2 |
tataaatactaaccacccctatggttacaagacacaagcctttctttcatttaccaaatatagtgtaatacatttaa |
78 |
Q |
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||||||||| || || ||| ||||||||||||||||| | ||||||||||| ||||| |||||||||||||||||| |
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| T |
6393169 |
tataaataccaagcatccccatggttacaagacacaaacatttctttcattagccaaagatagtgtaatacatttaa |
6393093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 6373255 - 6373177
Alignment:
| Q |
1 |
ctataaatactaacca-cccctatggttacaagacacaagcctttctttcatttaccaaatatagtgtaatacatttaa |
78 |
Q |
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||||||||| ||| || |||| ||||||||||||||||| | |||||||||||| |||| |||||||||||||||||| |
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| T |
6373255 |
ctataaatagtaagcatccccaatggttacaagacacaaacatttctttcatttgacaaagatagtgtaatacatttaa |
6373177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 6373685 - 6373611
Alignment:
| Q |
3 |
ataaatactaaccacccctatggttacaagacacaagcctttctttcatttaccaaatatagtgtaatacatttaa |
78 |
Q |
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|||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||||| ||| |||||||| ||||| |
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| T |
6373685 |
ataaatacaaaccaccc-tatggttaaaagacacaagcttttctttcattagccaaagatattgtaatacgtttaa |
6373611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 6412287 - 6412233
Alignment:
| Q |
24 |
ggttacaagacacaagcctttctttcatttaccaaatatagtgtaatacatttaa |
78 |
Q |
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||||||||||||||| | ||||||||||| ||||| |||||||||||||||||| |
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| T |
6412287 |
ggttacaagacacaaacatttctttcattagccaaagatagtgtaatacatttaa |
6412233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 6426680 - 6426643
Alignment:
| Q |
129 |
aaaagttgaagggaactgtggtgttgatgcaaaagaat |
166 |
Q |
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||||||| |||||||||||||||||||||||||||||| |
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| T |
6426680 |
aaaagttaaagggaactgtggtgttgatgcaaaagaat |
6426643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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