View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14258_low_4 (Length: 614)
Name: NF14258_low_4
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14258_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 1e-58; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 1139631 - 1139842
Alignment:
| Q |
14 |
gaataaaatcatcttaaaattcaaaagagaatcccaaatgacaatgaagattcataccaattttgaaattgttaatcgtatatatataattgaagaatat |
113 |
Q |
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| T |
1139631 |
gaataaaataatcttaaaattcaaaagaaaatctcaaatgacaatgaagattcatatcaattttgaaattgttaatcgtatata----attgaagaaaat |
1139726 |
T |
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| Q |
114 |
ataacagaa------------------cattaaactacaaaaagataaatagaaccacaataatttgtgaaaagaaactaatctagaatgaaaaaataac |
195 |
Q |
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| T |
1139727 |
ataacagaaagagaaaaaaaaacagatcattaaactacaaaaagataaatagaaccacaataatttgtgaaaagaaactaatttagaatgaaaaaataac |
1139826 |
T |
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| Q |
196 |
ctacaaaattggcata |
211 |
Q |
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| T |
1139827 |
ctacaaaattggcata |
1139842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 351 - 474
Target Start/End: Original strand, 1140352 - 1140475
Alignment:
| Q |
351 |
tttcctgttaattcctgtttttgccctcgtgaatccatgctacctatggaacccatctctctctagtgtgaaagtttccattttaatatcaaaagagaaa |
450 |
Q |
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| T |
1140352 |
tttcctgttaattcctgtttttgccctcgtgaatccatgctacctatggaacccatctctctctagtgtgaatgtttcttttttaatatcaaaagagaaa |
1140451 |
T |
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| Q |
451 |
tacatgtgaaagttagtttgagtc |
474 |
Q |
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| T |
1140452 |
ttcatgtgaaagttagtttgagtc |
1140475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 471 - 532
Target Start/End: Original strand, 1140516 - 1140577
Alignment:
| Q |
471 |
agtccctgcatccaatcaatgacaaccaaatagttagaaagaaagaaacagttatatcaaaa |
532 |
Q |
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| T |
1140516 |
agtccctgcatccaatcaatgacaaccaaatagttataaagaaagaaacatttatattaaaa |
1140577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 546 - 599
Target Start/End: Original strand, 1140636 - 1140689
Alignment:
| Q |
546 |
agaggtgggatatgattggtatgcaacgcttttgttatttagaaaccatgttat |
599 |
Q |
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| T |
1140636 |
agaggtgggatatgattggtatgcaacgcttttgttttatagaaaccatgttat |
1140689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 328
Target Start/End: Original strand, 1139927 - 1139955
Alignment:
| Q |
300 |
cccatactcacgttaatgccttcactctt |
328 |
Q |
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| T |
1139927 |
cccatactcacgttaatgccttcactctt |
1139955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 1140240 - 1140272
Alignment:
| Q |
322 |
cactcttgacgatttaatggacggtttcttttc |
354 |
Q |
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| T |
1140240 |
cactcttcacgatttaatggacggtttcttttc |
1140272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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