View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14258_low_5 (Length: 608)
Name: NF14258_low_5
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14258_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 549; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 11 - 599
Target Start/End: Complemental strand, 44722139 - 44721551
Alignment:
| Q |
11 |
acactccaactaccagatatatacctatttgatttggaaacctaaatttcaaggtttatattcataaaaagaaatttaagacctagcaccgcaatgccat |
110 |
Q |
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| T |
44722139 |
acactcaaactaccagatatatacctatttgatttggaaacctaaatttcaaggtttatatacataaaaagaaatttaagacctcgcaccgcaatgccat |
44722040 |
T |
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| Q |
111 |
agagcataatcacttggtgatttgcagactaatcatatgaacattcaaaaacttcttctcctttaaagaaagctttttatgatttctattccgacaagta |
210 |
Q |
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| T |
44722039 |
agagcataatgacttggtaatttgcagactaatcatatgaacattcaaaaacttcttcccctttaaagaaagctttttatgatttctattccgacaagta |
44721940 |
T |
|
| Q |
211 |
ctctcaataaaacaagtggatacttacaacagctagtttacgttcaaatttttcataacccgctatttgatgattgatatttagtttttaaattaggatt |
310 |
Q |
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| T |
44721939 |
ctctcaataaaacaagtggatacttacaacagctagtttacgttcaaatttttcataacccgctgtttgatgattgatatgtagtttttaaattaggatt |
44721840 |
T |
|
| Q |
311 |
gactttattaaagttcaatttaggatgtcattgatctgtattaggctagcgattgaagttcgcaacattactggtctgtaagcttcagttttatccgttt |
410 |
Q |
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| T |
44721839 |
gactttattaaagttcaatttaggatgtcattgatctgtattaggctagcgcttgaagttcgcaacattactggtctgtaagcttcagttttatccgttt |
44721740 |
T |
|
| Q |
411 |
atcgtcatgtttttgctgaagtatctgataactttctcaagttaattacttcctggctgcattcatttattcaataaagggtggcgttaaaactgaaggg |
510 |
Q |
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| T |
44721739 |
atcgtcatgtttttgctgaagtatctgataactttctcaagttaattacttcctggctgcattcatttattcaataaagggtggcgttaaaactgaaggg |
44721640 |
T |
|
| Q |
511 |
tcatattatataccctattccaaattaggcttgccaacttctagtgcaagctaactccttttgtacatttaatcatcttcttctcactc |
599 |
Q |
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| T |
44721639 |
tcatattatataccctattccaaattacgcttgccaacttctagtgcaagctaactccttttgtacatttaatcatcttcttctcactc |
44721551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 43952034 - 43951944
Alignment:
| Q |
35 |
ctatttgatttggaaacctaaatttcaaggtttatattcataaaaagaaatttaagacctagcaccgcaatgccatagagcataatcactt |
125 |
Q |
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| T |
43952034 |
ctatttgatttggaaacctaaatttcaaggttcagatatataaaaagaaatttaagttctagcatcacaatgccaaagaccataatgactt |
43951944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 43951897 - 43951808
Alignment:
| Q |
132 |
ttgcagactaatcatatgaacattcaaaaacttcttctcctttaaagaaagctttttatgatttctattccgacaagtactctcaataaaaca |
224 |
Q |
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| T |
43951897 |
ttgcatactaattatatgaacattaaaaaacttcc---ccttgaaaggaaactgtttatgatttctattccaacaagtgctctcaataaaaca |
43951808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 43951777 - 43951731
Alignment:
| Q |
217 |
ataaaacaagtggatacttacaacagctagtttacgttcaaattttt |
263 |
Q |
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| T |
43951777 |
ataaaacaagtagatacttacaacagctggtttacgttcaatttttt |
43951731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 519 - 588
Target Start/End: Complemental strand, 38673267 - 38673198
Alignment:
| Q |
519 |
tataccctattccaaattaggcttgccaacttctagtgcaagctaactccttttgtacatttaatcatct |
588 |
Q |
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| T |
38673267 |
tataccctattcctaattatgtttgcaaagttctagtacaagctaactccttttgtacatttaatcatct |
38673198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 38673516 - 38673451
Alignment:
| Q |
309 |
ttgactttattaaagttcaatttaggatgtcattgatctgtattaggctagcgattgaagttcgca |
374 |
Q |
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| T |
38673516 |
ttgacttcattaaggttcagtttaggatgtcactaatctgtattagtttagcgcttgaagttcgca |
38673451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 450
Target Start/End: Complemental strand, 38673411 - 38673359
Alignment:
| Q |
398 |
gttttatccgtttatcgtcatgtttttgctgaagtatctgataactttctcaa |
450 |
Q |
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| T |
38673411 |
gttttatccgtttatcgtcttgtttttgctgaagcatcggataatgttctcaa |
38673359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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