View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14258_low_7 (Length: 579)
Name: NF14258_low_7
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14258_low_7 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 21 - 579
Target Start/End: Original strand, 5677631 - 5678189
Alignment:
| Q |
21 |
tcaccaattttgttttctctgctattggaagaaggctttctgatatatgtaagattgaaacagaacctgcaatggtttttagtgctacatcattcaaata |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5677631 |
tcaccaattttgttttctctgctattggaagaaggctttctgaaatatgtaagattgaaacagaacctgcaatggtttttagtgctacatcattcaaata |
5677730 |
T |
|
| Q |
121 |
tgcatcagttcttgccaccaagttcccaactgaataatcttctgtcatctcaagatattcggccacacatcgaagcatagcgatgttttccacatttatc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5677731 |
tgcatcagttcttgccaccaagttcccaactgaataatcttctgtcatctcaagatattcggccacacatcgaagcatagcgatgttttccacatttatc |
5677830 |
T |
|
| Q |
221 |
tcgaaatttataccgtagcagaattttgctgctagttcaaatgcttctgctccaccaggaacatcggagagttcaacaaaggacacgtccgagtcattag |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5677831 |
tcgaaatttataccgtagcagaattttgctgctagttcaaatgcttctgctccaccaggaacatcggagagttcaacaaaggacacgtccgagtcattag |
5677930 |
T |
|
| Q |
321 |
attctgagacgagtttccgaatgtatccacacttggagactaatggatactgcaacgaatttaattcatacacactgtcatataaagcttttttgcactt |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5677931 |
attctgagacgagtttccgaatgtatccacacttggagactaatggatactgcaacgaatttaattcatacacactgtcatataaagtttttttgcactt |
5678030 |
T |
|
| Q |
421 |
ttaatcagtcataaaaacatatgtaacatcttgctttcaaattcaagtgatatattgagacagaaagnnnnnnncatgaaatggtttgtaacaaataagc |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||||||| | |
|
|
| T |
5678031 |
ttaatcagtcataaaaacatatgtaacatcttgctttcaaattcaagttatatattgagacagaaagaaaaaaacatgacatgttttgtaacaaataaac |
5678130 |
T |
|
| Q |
521 |
agtaacaattgattgacaggcggaatcgtgcaagtgtaagaaatcattactcttcactt |
579 |
Q |
| |
|
| |||||||||||||||| | | ||| | |||| ||||||||||||||||||||||| |
|
|
| T |
5678131 |
attaacaattgattgacaagtgacatcttacaagattaagaaatcattactcttcactt |
5678189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 26 - 296
Target Start/End: Complemental strand, 39777772 - 39777502
Alignment:
| Q |
26 |
aattttgttttctctgctattggaagaaggctttctgatatatgtaagattgaaacagaacctgcaatggtttttagtgctacatcattcaaatatgcat |
125 |
Q |
| |
|
||||||| ||||||||| ||||||||||| |||||||| |||||||||| || | | |||| ||| | || ||||| || |||||||| || | || |
|
|
| T |
39777772 |
aattttgctttctctgcaattggaagaagtgtttctgatgtatgtaagatggatattgcccctgacatgctcttgagtgcaacttcattcaagtaagaat |
39777673 |
T |
|
| Q |
126 |
cagttcttgccaccaagttcccaactgaataatcttctgtcatctcaagatattcggccacacatcgaagcatagcgatgttttccacatttatctcgaa |
225 |
Q |
| |
|
|||||||| | ||||| || || || ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| || |||| ||||| |
|
|
| T |
39777672 |
cagttcttcctaccaaatttccgaccgaataatcttctgtcatttcaagatactcggctacacatcgaagcatagcgatgttttcgacgcttatttcgaa |
39777573 |
T |
|
| Q |
226 |
atttataccgtagcagaattttgctgctagttcaaatgcttctgctccaccaggaacatcggagagttcaa |
296 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||| |||||| |||||||| |
|
|
| T |
39777572 |
gtttatcccgtaacagaactttgctgctagttcaaatgcttctgatccaccagggacatcgatgagttcaa |
39777502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 152 - 278
Target Start/End: Original strand, 47798497 - 47798623
Alignment:
| Q |
152 |
gaataatcttctgtcatctcaagatattcggccacacatcgaagcatagcgatgttttccacatttatctcgaaatttataccgtagcagaattttgctg |
251 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||| |||| |||| || |||| || || ||||| | ||| ||||| ||||||| |
|
|
| T |
47798497 |
gaataatcttctgtcatttcaagatatttggccacacatcgaagcatagtgatgctttcaacgcttatttcaaagtttatccagtaacagaactttgctg |
47798596 |
T |
|
| Q |
252 |
ctagttcaaatgcttctgctccaccag |
278 |
Q |
| |
|
|||||||||||| ||||| |||||||| |
|
|
| T |
47798597 |
ctagttcaaatgtttctgatccaccag |
47798623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University