View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14258_low_9 (Length: 538)
Name: NF14258_low_9
Description: NF14258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14258_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 209 - 526
Target Start/End: Complemental strand, 30365102 - 30364767
Alignment:
| Q |
209 |
catagatagattttcgttgcactgttcgaaaagtattttcgaccgttaggaaactaaccgttacactttaacaacattacagagcgacacactcctt--- |
305 |
Q |
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| T |
30365102 |
catagatagattttcgttgcactgttcgaaaagtattttcgaccgttaggaaactaaccgttacactttaacaacattacagagcgacacactccttctt |
30365003 |
T |
|
| Q |
306 |
-----tcatctttctcaattctc----------ttctcttccctccaattacacaaacacgctctctattcatctctactttaatcataaccaatttcat |
390 |
Q |
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| T |
30365002 |
tctcttcatctttctcaattctcctctcttctcttctcttccctccaattacacaaacacgctctctattcatctctactttaatcataaccaatttcat |
30364903 |
T |
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| Q |
391 |
accaaccctaatcggaattgaaaatggcggtggaggagggaactggcggtggtggcacaactatcatcgacgagatttacgaattctgtgcgccgagatt |
490 |
Q |
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| T |
30364902 |
accaaccctaatcggaattgaaaatggcggtggaggagggaactggcggtggtggcacaactatcatcgatgagatttacgaattctgtgcgccgagatt |
30364803 |
T |
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| Q |
491 |
ctttgatttcttgaaaggggaatccgatgatgatgt |
526 |
Q |
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| T |
30364802 |
ctttgatttcttgaaaggggaatccgatgatgatgt |
30364767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 24468116 - 24468071
Alignment:
| Q |
373 |
aatcataaccaatttcataccaaccctaatcggaattgaaaatggc |
418 |
Q |
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| T |
24468116 |
aatcataactaatttcatacaaaccctaatcagaattgaaaatggc |
24468071 |
T |
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