View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14259_high_1 (Length: 800)
Name: NF14259_high_1
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14259_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 646; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 1 - 787
Target Start/End: Complemental strand, 4092371 - 4091594
Alignment:
| Q |
1 |
tttggcttcaacaatattcatcttagtgactttaatgggaggattagtgggttatctctattggccattttggaagttatggaaagttccaggcccacca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4092371 |
tttggcttcaacaatattcatcttagtgactttaatgggaggattagtgggttatctctattggccattttggaagttaaggaaagttccaggcccacca |
4092272 |
T |
|
| Q |
101 |
tctctgcctcttgtaggacaccttccattgctagcaaagtatggtcctgacgttttctcagtccttgctaagcaatatggccctatctacaggtttctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4092271 |
tctctgcctcttgtaggacaccttccattgctagcaaagtatggtcctgacgttttctcagtccttgctaagcaatatggccctatctacaggtttctat |
4092172 |
T |
|
| Q |
201 |
attctacttgcatacatatatacaatttatcactttatttatctttcttcctctttttcttttagttctctggttgagaaggatnnnnnnngaagctgtt |
300 |
Q |
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| T |
4092171 |
attctacttgcatac----atacaatttatcactttatttatctttcttcctctttttcttttagttctctggttgagaaggataaaaaaagaagctgtt |
4092076 |
T |
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| Q |
301 |
attgttggaatcaagatcaagttgaatacatgtcatgatatgcaaaatcttcaaaccctttttgatgaggatgaacttcagcctagtcatgatggctacg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4092075 |
attgttggaatcaagatcaagttgaatacatgtcatgatatgcaaaatcttcaaaccctttttgatgaggatgaacttcagcctagtcatgatggctacg |
4091976 |
T |
|
| Q |
401 |
aaccctagcctagtggataatgcttggggnnnnnnnntactacttgtgtatttggatgctagcatttgttattacatgcaagtttgagactagggttaat |
500 |
Q |
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| T |
4091975 |
aaccctagcctagtggataatgcttgggg-aaaaaaatactacttgtgtatttggatgctagcatttgttattacatgcaagtttgagactagggttaat |
4091877 |
T |
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| Q |
501 |
attttatttaggatattttctaaattaaaacaaatattaatctttannnnnnnnaataataattaatgagattagcaaaatcaattttaaaagaaaattt |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4091876 |
attttatttaggatattttctaaattaaaacaaatattaatctttattttttttaataa----taatgagattagcaaaatcaattttaaaagaaaattt |
4091781 |
T |
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| Q |
601 |
tgatgtaagtcaaatattaaaataattattactgttgatgatattgttcatatttgttaaatggagcagatttcatatgggaagacaacctcttataatc |
700 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4091780 |
tgatgcaagtcaaatattaaaataattattactgttgatgatattgttcatatttgttaaatggagcagatttcatatgggaagacaacctcttataatc |
4091681 |
T |
|
| Q |
701 |
atagcagatgcagagctttgtaaagaagtgggaatnnnnnnnttcaaagacattccaaacagaagcattccttctcctatctctgct |
787 |
Q |
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| T |
4091680 |
atagcagatgcagagctttgtaaagaagtgggaattaaaaaattcaaagaaattccaaacagaagcattccttctcctatctctgct |
4091594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 666 - 780
Target Start/End: Original strand, 48182321 - 48182435
Alignment:
| Q |
666 |
gcagatttcatatgggaagacaacctcttataatcatagcagatgcagagctttgtaaagaagtgggaatnnnnnnnttcaaagacattccaaacagaag |
765 |
Q |
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|||||||||||||||||||||| || || ||||| ||||||||||||| || |||||||| || ||||| || |||||||||||||||||||| |
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| T |
48182321 |
gcagatttcatatgggaagacagccactaataatagtagcagatgcagaactgtgtaaagaggttggaatcaaaaaatttaaagacattccaaacagaag |
48182420 |
T |
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| Q |
766 |
cattccttctcctat |
780 |
Q |
| |
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|| ||| |||||||| |
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| T |
48182421 |
cactccctctcctat |
48182435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 196
Target Start/End: Original strand, 48175545 - 48175660
Alignment:
| Q |
81 |
ggaaagttccaggcccaccatctctgcctcttgtaggacaccttccattgctagcaaagtatggtcctgacgttttctcagtccttgctaagcaatatgg |
180 |
Q |
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|||| ||||| || |||||||||||||| | ||||| ||||||| ||||| || || |||| ||||| ||||||||||||||||| ||||||||||| |
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| T |
48175545 |
ggaaggttcctggtccaccatctctgccgttggtagggcaccttcacttgctggctaaacatggccctgatgttttctcagtccttgccaagcaatatgg |
48175644 |
T |
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| Q |
181 |
ccctatctacaggttt |
196 |
Q |
| |
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|| || ||||||||| |
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| T |
48175645 |
tccaatttacaggttt |
48175660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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