View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14259_high_10 (Length: 411)
Name: NF14259_high_10
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14259_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 44783167 - 44783369
Alignment:
| Q |
23 |
tcccaaaaacaaagtaaacatcaattgtcagttcaacataggttagagactttaagataaatataaatagttaagctaaaatagcttatttcttcataaa |
122 |
Q |
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| T |
44783167 |
tcccaaaaacaaagtaaacatcaattgtcagttcaacatag-ttagagactttaagataaatataaatagttaagctaaaatagcttatttcttcataaa |
44783265 |
T |
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| Q |
123 |
tttgatacccaaacaaaacaagatattactttttaacaagattctcgtatcagtttacacttgcaaaaaatttactataatattgatagatattgcttca |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44783266 |
tttgatacccaaacaaaacaagatattactttttaacaagattctcgtatcagtttacacttgcaaaaaatttactataatattgatagatattgcttca |
44783365 |
T |
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| Q |
223 |
tcag |
226 |
Q |
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|||| |
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| T |
44783366 |
tcag |
44783369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 235 - 358
Target Start/End: Original strand, 44783685 - 44783810
Alignment:
| Q |
235 |
ttggtaaattttttaattgctttcttttcagttttacgattcatttcatga--acaagatgtagttgtttcatgaacaatttgtactcttaataaaactc |
332 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44783685 |
ttggtaaaaattttaattgctttcttttcagttttacgattcatttcatgataataagatgtagttgtttcatgaataatttgtactcttaataaaactc |
44783784 |
T |
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| Q |
333 |
attgaaaatatggggaaaatgttatg |
358 |
Q |
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| T |
44783785 |
gttgaaaatatggggaaaatgttatg |
44783810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 9912354 - 9912415
Alignment:
| Q |
288 |
aagatgtagttgtttcatgaacaa-tttgtactcttaataaaactcattgaaaatatgggga |
348 |
Q |
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| T |
9912354 |
aagatgtagttgtttcatgaataagtttgtactctaaataaaactcattgaaaatgtgggga |
9912415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 341
Target Start/End: Complemental strand, 15415961 - 15415872
Alignment:
| Q |
255 |
tttcttttcagttttacgattcatttcatga--acaagatgtagttgtttcatgaa-caatttgtactcttaataaaactcattgaaaat |
341 |
Q |
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| T |
15415961 |
tttcttttcagtttcactgttcatttcaggataataagatgtagttgtttcatgaataaatttgtactctagataaaactcaatgaaaat |
15415872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 30616696 - 30616757
Alignment:
| Q |
288 |
aagatgtagttgtttcatgaacaatttg-tactcttaataaaactcattgaaaatatgggga |
348 |
Q |
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||||| ||||||||||||||| ||||| ||||||| ||||||||||||| |||| |||||| |
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| T |
30616696 |
aagatatagttgtttcatgaataatttcatactctttataaaactcattgtaaatgtgggga |
30616757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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