View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14259_high_17 (Length: 355)

Name: NF14259_high_17
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14259_high_17
NF14259_high_17
[»] chr1 (7 HSPs)
chr1 (38-355)||(10302924-10303245)
chr1 (261-305)||(36982392-36982436)
chr1 (217-305)||(24801371-24801462)
chr1 (258-330)||(35692519-35692591)
chr1 (261-305)||(7242867-7242911)
chr1 (248-324)||(13546450-13546526)
chr1 (251-303)||(25086078-25086130)
[»] chr7 (5 HSPs)
chr7 (217-349)||(8839297-8839432)
chr7 (217-349)||(13254117-13254252)
chr7 (260-306)||(31717924-31717970)
chr7 (261-305)||(28537427-28537471)
chr7 (254-299)||(24172237-24172282)
[»] chr8 (7 HSPs)
chr8 (261-324)||(8878136-8878199)
chr8 (254-351)||(15682959-15683056)
chr8 (254-305)||(30936034-30936085)
chr8 (219-306)||(27121809-27121899)
chr8 (272-305)||(8034189-8034222)
chr8 (254-299)||(36994566-36994611)
chr8 (265-305)||(4321564-4321604)
[»] chr3 (3 HSPs)
chr3 (254-349)||(40294642-40294737)
chr3 (217-305)||(22288225-22288316)
chr3 (261-297)||(9651087-9651123)
[»] chr6 (10 HSPs)
chr6 (255-340)||(21910236-21910321)
chr6 (254-349)||(12411178-12411273)
chr6 (261-343)||(29185330-29185412)
chr6 (248-297)||(28933162-28933211)
chr6 (254-342)||(5944872-5944960)
chr6 (248-299)||(31107559-31107610)
chr6 (251-305)||(35074511-35074565)
chr6 (248-305)||(28099267-28099324)
chr6 (261-305)||(12836957-12837001)
chr6 (257-305)||(31868637-31868685)
[»] chr2 (7 HSPs)
chr2 (254-297)||(17627589-17627632)
chr2 (261-305)||(12133290-12133334)
chr2 (254-297)||(17672661-17672704)
chr2 (254-297)||(18105430-18105473)
chr2 (251-306)||(29995481-29995536)
chr2 (261-355)||(31579239-31579333)
chr2 (255-305)||(32643043-32643092)
[»] chr4 (8 HSPs)
chr4 (261-330)||(2434596-2434665)
chr4 (262-305)||(45994560-45994603)
chr4 (273-303)||(24348724-24348754)
chr4 (280-349)||(3649062-3649131)
chr4 (284-348)||(3976634-3976698)
chr4 (258-306)||(38844227-38844275)
chr4 (261-349)||(47023439-47023527)
chr4 (257-305)||(51626366-51626414)
[»] chr5 (5 HSPs)
chr5 (257-299)||(12682668-12682710)
chr5 (217-278)||(28023530-28023594)
chr5 (248-298)||(35774609-35774659)
chr5 (260-305)||(3525914-3525959)
chr5 (261-305)||(30785046-30785090)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 38 - 355
Target Start/End: Original strand, 10302924 - 10303245
Alignment:
Q  38 ataatcaaattctaataagcatatttttcatccacccttgttgaatgaagaataaggttcctttgttattatataagtattcaaagaaattcctaataca 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10302924 ataatcaaattctaataagcatatttttcatccacccttgttgaatgaagaataaggttcctttgttattatataagtattcaaagaaattcctaataca 10303023  T
Q  138 gtgctatcattcaagcatatttatcaattatttcattttaaaatatttcttttcagtgatattgaaacacctaagaatactt-agatgagatgacacgga 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||  |    
T  10303024 gtgctatcattcaagcatatttatcaattatttcattttaaaatatttcttttcagtgatattgaaatacctaagaatacttaagatgagatggcacaaa 10303123  T
Q  237 tctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccat 333  Q
    |||||||||||   ||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||| |  ||||||||| |||||||||| ||||    
T  10303124 tctattctagcttaactaaagtcttgagttcgaatccagctttagacatgcaacaacgttaaaactcttagaaaaaatttaccgttcatttaggttccat 10303223  T
Q  334 aatactcgaaggattaatttcc 355  Q
    ||||||| | ||||||||||||    
T  10303224 aatactcaagggattaatttcc 10303245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 36982392 - 36982436
Alignment:
Q  261 gttcgaatccagccttagacatgcaacaacgttaaaacttttagg 305  Q
    |||||||| |||||||||||||||||||||||||||||| |||||    
T  36982392 gttcgaattcagccttagacatgcaacaacgttaaaactcttagg 36982436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 24801371 - 24801462
Alignment:
Q  217 cttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 305  Q
    ||||||||||||||||||||| | || |||    |||||||||||  |||||||||||||||||| |||||| ||  ||||||||| |||||    
T  24801371 cttagatgagatgacacggatttcttatagattaactaaagtccttggttcgaatccagccttaggcatgcagcactgttaaaactcttagg 24801462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 330
Target Start/End: Original strand, 35692519 - 35692591
Alignment:
Q  258 tgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcc 330  Q
    |||||||||||||| | || | |||||||| ||||||||||| |||||  || ||| ||||||||||||||||    
T  35692519 tgagttcgaatccaacattgggcatgcaacgacgttaaaactcttagggagagtttgccgctcatttaggtcc 35692591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 7242911 - 7242867
Alignment:
Q  261 gttcgaatccagccttagacatgcaacaacgttaaaacttttagg 305  Q
    |||||||||||| ||| |||||||| ||||||||||||| |||||    
T  7242911 gttcgaatccagtcttggacatgcagcaacgttaaaactcttagg 7242867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 324
Target Start/End: Original strand, 13546450 - 13546526
Alignment:
Q  248 actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcattt 324  Q
    ||||||||| || |||||||||||| |||| ||||| ||||| ||||||||| ||| |  || |||||||| |||||    
T  13546450 actaaagtcgtgggttcgaatccagtcttatacatgtaacaatgttaaaactcttatggagagtttaccgcccattt 13546526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 25086130 - 25086078
Alignment:
Q  251 aaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaactttta 303  Q
    ||||| ||||||||||| |||  ||||  ||||||||||||||||||||||||    
T  25086130 aaagttctgagttcgaaaccaatcttaagcatgcaacaacgttaaaactttta 25086078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 349
Target Start/End: Complemental strand, 8839432 - 8839297
Alignment:
Q  217 cttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaattt 313  Q
    |||||||||||||| |||| ||| |||||||   || || |||||| |||||||||||||||| | |||||| || |||||||||| |||||  |||| |    
T  8839432 cttagatgagatgaaacgggtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagaatct 8839333  T
Q  314 accgctcatttaggtcccataatactcgaaggatta 349  Q
     ||||  |||||| ||||| ||||||||| ||||||    
T  8839332 gccgcctatttagatcccacaatactcgagggatta 8839297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 349
Target Start/End: Complemental strand, 13254252 - 13254117
Alignment:
Q  217 cttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaattt 313  Q
    |||||||||||||  |||| ||| |||||||   || || ||||||||||||||||||||||||| |||||| || |||| ||||| |||||  ||   |    
T  13254252 cttagatgagatggaacgggtctcttctagcttaaccaaggtcctgagttcgaatccagccttaggcatgcagcagcgttgaaactcttagggagagcct 13254153  T
Q  314 accgctcatttaggtcccataatactcgaaggatta 349  Q
     |||| ||||||||||||| ||| ||||| ||||||    
T  13254152 gccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 31717970 - 31717924
Alignment:
Q  260 agttcgaatccagccttagacatgcaacaacgttaaaacttttagga 306  Q
    |||||||||||| ||||||||||||| ||||||||||||| ||||||    
T  31717970 agttcgaatccaaccttagacatgcagcaacgttaaaactcttagga 31717924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 28537427 - 28537471
Alignment:
Q  261 gttcgaatccagccttagacatgcaacaacgttaaaacttttagg 305  Q
    |||||||||||||||| | |||||||||||||||||||| |||||    
T  28537427 gttcgaatccagccttgggcatgcaacaacgttaaaactcttagg 28537471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 24172237 - 24172282
Alignment:
Q  254 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaact 299  Q
    |||||| ||||||||||| |||| | ||||||||||||||||||||    
T  24172237 gtcctgggttcgaatccaaccttgggcatgcaacaacgttaaaact 24172282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 8878199 - 8878136
Alignment:
Q  261 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcattt 324  Q
    ||||||||||||| |||| |||||||||||||||||||| |||||| || |||||| |||||||    
T  8878199 gttcgaatccagctttaggcatgcaacaacgttaaaactcttaggaagagtttacctctcattt 8878136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 351
Target Start/End: Original strand, 15682959 - 15683056
Alignment:
Q  254 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaat 351  Q
    ||||||||||||||||||||||| | |||||| || |||||||||| |||||  ||   | |||| ||||||||||||| ||| ||||| ||||||||    
T  15682959 gtcctgagttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggattaat 15683056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 30936034 - 30936085
Alignment:
Q  254 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 305  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||| |||||    
T  30936034 gtcctgagttcgaatccagccttaagcatgcagcaacgttaaaactcttagg 30936085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 306
Target Start/End: Complemental strand, 27121899 - 27121809
Alignment:
Q  219 tagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagga 306  Q
    |||||||||| |||||| ||| |||||||   || ||||| ||| ||||||||||||| |||  |||||||||  ||||||||||||||||    
T  27121899 tagatgagataacacgggtctcttctagcttaaccaaagttctgggttcgaatccagctttaagcatgcaacagtgttaaaacttttagga 27121809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 305
Target Start/End: Complemental strand, 8034222 - 8034189
Alignment:
Q  272 gccttagacatgcaacaacgttaaaacttttagg 305  Q
    |||||||||||||||||||||||||||| |||||    
T  8034222 gccttagacatgcaacaacgttaaaactcttagg 8034189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 36994611 - 36994566
Alignment:
Q  254 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaact 299  Q
    |||||| |||||||||||||||| |||||||| || ||||||||||    
T  36994611 gtcctgggttcgaatccagccttggacatgcagcagcgttaaaact 36994566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 4321604 - 4321564
Alignment:
Q  265 gaatccagccttagacatgcaacaacgttaaaacttttagg 305  Q
    |||||||| ||||||||||||| |||||||||||| |||||    
T  4321604 gaatccagtcttagacatgcaataacgttaaaactcttagg 4321564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 349
Target Start/End: Original strand, 40294642 - 40294737
Alignment:
Q  254 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggatta 349  Q
    ||||||||||||||||||||||| || ||||||||| ||||||||| |||||   |  || ||||||||||   ||||| ||||||||||||||||    
T  40294642 gtcctgagttcgaatccagccttggatatgcaacaatgttaaaactcttagggaaagcttgccgctcatttgaatcccacaatactcgaaggatta 40294737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 22288225 - 22288316
Alignment:
Q  217 cttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 305  Q
    |||||||||||||||| | |||| ||||| |   || |||||||||||||||||| |||||||  ||||||||||| ||||||||| |||||    
T  22288225 cttagatgagatgacatgaatctcttctaacttaaccaaagtcctgagttcgaattcagccttgaacatgcaacaatgttaaaactcttagg 22288316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 9651087 - 9651123
Alignment:
Q  261 gttcgaatccagccttagacatgcaacaacgttaaaa 297  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  9651087 gttcgaattcagccttggacatgcaacaacgttaaaa 9651123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 21910236 - 21910321
Alignment:
Q  255 tcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactc 340  Q
    ||||| |||||||||||||||| | ||||||||| |||||||||| ||||   || | | |||||||||||||||||| |||||||    
T  21910236 tcctgggttcgaatccagccttgggcatgcaacatcgttaaaactcttagagagagtctgccgctcatttaggtcccacaatactc 21910321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 349
Target Start/End: Original strand, 12411178 - 12411273
Alignment:
Q  254 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggatta 349  Q
    ||||||||||||||||||||||| | |||||| || |||||||||| |||||| || | | |||| |||||| |||||| ||| || || ||||||    
T  12411178 gtcctgagttcgaatccagccttgggcatgcagcagcgttaaaactcttaggaagagtctgccgcccatttaagtcccacaatgcttgagggatta 12411273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 29185330 - 29185412
Alignment:
Q  261 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaa 343  Q
    ||||||||||||| ||||||||||| ||||||||||||| |||||  |||| || ||  |||||||||| || ||| ||||||    
T  29185330 gttcgaatccagcattagacatgcatcaacgttaaaactcttagggagaatatatcgtccatttaggtctcacaatcctcgaa 29185412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 28933162 - 28933211
Alignment:
Q  248 actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaa 297  Q
    ||||||||||||| || |||| ||||||||||||||||||| ||||||||    
T  28933162 actaaagtcctgattttgaattcagccttagacatgcaacatcgttaaaa 28933211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 342
Target Start/End: Original strand, 5944872 - 5944960
Alignment:
Q  254 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcga 342  Q
    ||||||||||||||| ||| ||| |||||| ||||  |||||||||||||||  || ||| |||| ||||||| ||| | |||||||||    
T  5944872 gtcctgagttcgaattcagtctttgacatgtaacattgttaaaacttttagggagagtttgccgcccatttagatcctacaatactcga 5944960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 31107610 - 31107559
Alignment:
Q  248 actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaact 299  Q
    ||||| || ||||||||||||||||| || ||||||||||| ||||||||||    
T  31107610 actaaggttctgagttcgaatccagcattggacatgcaacagcgttaaaact 31107559  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 35074511 - 35074565
Alignment:
Q  251 aaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 305  Q
    ||||||||||||||||||| ||| |||||  ||||||| |||| |||||||||||    
T  35074511 aaagtcctgagttcgaatctagctttagatgtgcaacaccgttcaaacttttagg 35074565  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 28099267 - 28099324
Alignment:
Q  248 actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 305  Q
    ||||| |||||| |||||||||||||||| | |||||| ||  |||||||||||||||    
T  28099267 actaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaacttttagg 28099324  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 12837001 - 12836957
Alignment:
Q  261 gttcgaatccagccttagacatgcaacaacgttaaaacttttagg 305  Q
    |||||||||||||||||| |||||| || |||||||||| |||||    
T  12837001 gttcgaatccagccttaggcatgcagcagcgttaaaactcttagg 12836957  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 31868685 - 31868637
Alignment:
Q  257 ctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 305  Q
    ||||||||||||||| |||| ||||| |||||| ||||||||| |||||    
T  31868685 ctgagttcgaatccaaccttggacatacaacaatgttaaaactcttagg 31868637  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 297
Target Start/End: Original strand, 17627589 - 17627632
Alignment:
Q  254 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaa 297  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  17627589 gtcctgagttcgaatccagccttgggcatgcaacaacgttaaaa 17627632  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 12133334 - 12133290
Alignment:
Q  261 gttcgaatccagccttagacatgcaacaacgttaaaacttttagg 305  Q
    |||||||||||||||| |||||||| ||||||||||||| |||||    
T  12133334 gttcgaatccagccttggacatgcagcaacgttaaaactcttagg 12133290  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 297
Target Start/End: Original strand, 17672661 - 17672704
Alignment:
Q  254 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaa 297  Q
    |||||||||||||||||| |||| | ||||||||||||||||||    
T  17672661 gtcctgagttcgaatccaaccttgggcatgcaacaacgttaaaa 17672704  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 18105473 - 18105430
Alignment:
Q  254 gtcctgagttcgaatccagccttagacatgcaacaacgttaaaa 297  Q
    |||||| |||||||||||||||| | ||||||||||||||||||    
T  18105473 gtcctgggttcgaatccagccttgggcatgcaacaacgttaaaa 18105430  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 29995536 - 29995481
Alignment:
Q  251 aaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagga 306  Q
    ||||||||||||||||||||||| ||  | ||||||||||||||||| ||| ||||    
T  29995536 aaagtcctgagttcgaatccagcattgaaaatgcaacaacgttaaaattttaagga 29995481  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 355
Target Start/End: Complemental strand, 31579333 - 31579239
Alignment:
Q  261 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggattaatttcc 355  Q
    |||||||||||||||| | |||||||||  |||||||||||||||  || | | |||| |||||| |||||| ||| ||||| | |||| |||||    
T  31579333 gttcgaatccagccttgggcatgcaacagtgttaaaacttttagggagagtctgccgcccatttaagtcccacaatgctcgaggaattagtttcc 31579239  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 32643092 - 32643043
Alignment:
Q  255 tcctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 305  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||| ||||||    
T  32643092 tcctgaattcgaatccagcctt-gacatgcaacaacgtcaaaacatttagg 32643043  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 330
Target Start/End: Original strand, 2434596 - 2434665
Alignment:
Q  261 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcc 330  Q
    |||||||||||||||| ||||| |||||||||||||||| ||| ||  | |||  |||||||||||||||    
T  2434596 gttcgaatccagccttggacatacaacaacgttaaaactcttacgaaaagtttgtcgctcatttaggtcc 2434665  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 305
Target Start/End: Original strand, 45994560 - 45994603
Alignment:
Q  262 ttcgaatccagccttagacatgcaacaacgttaaaacttttagg 305  Q
    ||||||||||||||| | |||||||||||||||||||| |||||    
T  45994560 ttcgaatccagccttgggcatgcaacaacgttaaaactcttagg 45994603  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 303
Target Start/End: Original strand, 24348724 - 24348754
Alignment:
Q  273 ccttagacatgcaacaacgttaaaactttta 303  Q
    |||||||||||||||||||||||||||||||    
T  24348724 ccttagacatgcaacaacgttaaaactttta 24348754  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 3649131 - 3649062
Alignment:
Q  280 catgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggatta 349  Q
    |||||||||||||||||||| |||||  || ||| |||||||||| | || || || |||||||||||||    
T  3649131 catgcaacaacgttaaaactcttagggagagttttccgctcatttggatcgcacaagactcgaaggatta 3649062  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 3976634 - 3976698
Alignment:
Q  284 caacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggatt 348  Q
    ||||||||||||||||||||||  || |||||||| ||||| | ||||| || ||||| ||||||    
T  3976634 caacaacgttaaaacttttagggagattttaccgcccatttggatcccacaagactcgtaggatt 3976698  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 38844275 - 38844227
Alignment:
Q  258 tgagttcgaatccagccttagacatgcaacaacgttaaaacttttagga 306  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||||    
T  38844275 tgagttcgaatccagctttgggcatgcaacagcgttaaaactcttagga 38844227  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 349
Target Start/End: Original strand, 47023439 - 47023527
Alignment:
Q  261 gttcgaatccagccttagacatgcaacaacgttaaaacttttaggatgaatttaccgctcatttaggtcccataatactcgaaggatta 349  Q
    |||| ||||||| ||||| |||||||||| ||||||||| |||||  || |||  ||  ||||| ||||||| || |||||||||||||    
T  47023439 gttccaatccagacttaggcatgcaacaaagttaaaactcttagggagagtttgtcgtccatttgggtcccacaagactcgaaggatta 47023527  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 51626414 - 51626366
Alignment:
Q  257 ctgagttcgaatccagccttagacatgcaacaacgttaaaacttttagg 305  Q
    |||||||||||||||||||| | |||||| ||  |||||||||||||||    
T  51626414 ctgagttcgaatccagccttgggcatgcagcagtgttaaaacttttagg 51626366  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 299
Target Start/End: Original strand, 12682668 - 12682710
Alignment:
Q  257 ctgagttcgaatccagccttagacatgcaacaacgttaaaact 299  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  12682668 ctgagttcgaatccagccttgagcatgcaacaacgttaaaact 12682710  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 28023594 - 28023530
Alignment:
Q  217 cttagatgagatgacacggatctattctagc---actaaagtcctgagttcgaatccagccttag 278  Q
    |||||||||||||  |||||||| |||||||   || || |||||||||||||||||||||||||    
T  28023594 cttagatgagatggaacggatctcttctagcttaaccaatgtcctgagttcgaatccagccttag 28023530  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 35774609 - 35774659
Alignment:
Q  248 actaaagtcctgagttcgaatccagccttagacatgcaacaacgttaaaac 298  Q
    ||||||||| |||||||||||  |||||| |||||||||||| ||||||||    
T  35774609 actaaagtcttgagttcgaatttagccttggacatgcaacaatgttaaaac 35774659  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 3525959 - 3525914
Alignment:
Q  260 agttcgaatccagccttagacatgcaacaacgttaaaacttttagg 305  Q
    ||||||||||||  |||||||||||||||  |||||||||||||||    
T  3525959 agttcgaatccactcttagacatgcaacattgttaaaacttttagg 3525914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 30785090 - 30785046
Alignment:
Q  261 gttcgaatccagccttagacatgcaacaacgttaaaacttttagg 305  Q
    ||||||||||||| || |||||||| ||||||||||||| |||||    
T  30785090 gttcgaatccagctttggacatgcagcaacgttaaaactcttagg 30785046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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