View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14259_high_19 (Length: 320)
Name: NF14259_high_19
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14259_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 45521585 - 45521898
Alignment:
| Q |
1 |
taccaaaaggggtgatgttaacacacaaaggtttggtgagtagcatagcacaacaagtagatggagagaatccaaatctatattacagaagtgaagatgt |
100 |
Q |
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| T |
45521585 |
taccaaaaggggttatgttaacacacaaaggtttggtgagtagcattgcacagcaagtagatggagagaatccaaatctatattacagaagtgaagatgt |
45521684 |
T |
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| Q |
101 |
gatactttgtgtgcttcctctgtttcatatttattcactaaactctgttttgctctgtggactcagagccaaagctaccattctcttgatgccaaaattc |
200 |
Q |
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| T |
45521685 |
gatactttgtgtgcttcctctgtttcatatttattcactaaactctgttttgctctgtggactcagagccaaagctaccattctcttgatgccaaaattc |
45521784 |
T |
|
| Q |
201 |
gatataaattcattcttgaatcttgttaacaaacatggagtaacagttgcacctgttgttcctcctattgtattggcaatagcaaaatcaccagatctta |
300 |
Q |
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| T |
45521785 |
gatataaattcattcttgaatcttgttaacaaacatggagtaacagttgcacctgttgttcctcctattgtattggcaatagcaaaatcaccagatctta |
45521884 |
T |
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| Q |
301 |
ataagtataatcta |
314 |
Q |
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| T |
45521885 |
ataagtatgatcta |
45521898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 350587 - 350746
Alignment:
| Q |
1 |
taccaaaaggggtgatgttaacacacaaaggtttggtgagtagcatagcacaacaagtagatggagagaatccaaatctatattacagaagtgaagatgt |
100 |
Q |
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|||| ||||| || ||| ||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |
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| T |
350587 |
tacctaaaggtgttatgctaacacacaaagggttggtgacaagcatagcacaacaagttgatggagaaaatccaaatctatattatcacagtgaagatgt |
350686 |
T |
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| Q |
101 |
gatactttgtgtgcttcctctgtttcatatttattcactaaactctgttttgctctgtgg |
160 |
Q |
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| T |
350687 |
catactatgtgttcttcccatgtttcatatttactcactcaactcagttttgctttgtgg |
350746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 1444971 - 1445053
Alignment:
| Q |
48 |
gcacaacaagtagatggagagaatccaaatctatattacagaagtgaagatgtgatactttgtgtgcttcctctgtttcatat |
130 |
Q |
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||||||||||| ||||||||||||||||||||| ||| | || |||||||| | |||||||| ||||| |||||||||| |
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| T |
1444971 |
gcacaacaagtggatggagagaatccaaatctacatttaacaacagaagatgttcttctttgtgttcttccattgtttcatat |
1445053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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