View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14259_high_2 (Length: 685)
Name: NF14259_high_2
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14259_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 14 - 633
Target Start/End: Original strand, 15180297 - 15180938
Alignment:
| Q |
14 |
cacagaaggaattaaagttcaaagttgccatgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggcggagacaaaggcgaaagataa |
113 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
15180297 |
cacagaaggaattaaagttcaaagtggccatgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggtggagacaaaggcgaaagacaa |
15180396 |
T |
|
| Q |
114 |
ttt-cgggaactgcaattgatcttgctagcaatgacaatgctatcaccgat---------------------attggaattgttgttaggggacaagcta |
191 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15180397 |
ttttctggaactgcaattgatcttgctagcaatgacaatgctatcaccgatgtcgcaattttctcagcagccattggaattgttgttaggggacaagcta |
15180496 |
T |
|
| Q |
192 |
acataatcacaggtgtgcattgttataacaaagcaacaggttttggtggaattggaattttgttgaagttagcagggaattcacaaacaagaattgataa |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15180497 |
acataatcacaggtgtgcattgttataacaaagcaacaggttttggtggaattggaattttgttgaagttagcagggaattcacaaacaagaattgataa |
15180596 |
T |
|
| Q |
292 |
ttgttacatggattataattctatagtcatggaagatcctgttcaagttcatgttactaatggttttttcttaggggatgctaatattgttttgaagtca |
391 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15180597 |
ttgttacatggattataatagtatagtcatggaagatcctgttcaagttcatgtcactgatggttttttcttaggagatgctaatattgttttgaagtca |
15180696 |
T |
|
| Q |
392 |
attaaagggaaagtttatggtttaaatattgttaacaatatgtttagtggaaaccctaataataatgttccaattgtaaaattagatgggggatttagta |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15180697 |
attaaagggaaagtttatggtttaaatattgttaacaatatgtttagtggaaaccctaataataatgttccaattgtaaaattagatgggggatttagta |
15180796 |
T |
|
| Q |
492 |
acattgatcaagtggtgattgataggaacaatgtgattggtatgattttaagatcaaccgttgggaagttgaatgtggatggtaatggcacaaaatgggt |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
15180797 |
acattgatcaagtggtgattgataggaacaatgtgattggtatgattttaagatcaacggttgggaagttaagtgtggatggtaatggcacaaaatgggt |
15180896 |
T |
|
| Q |
592 |
gggtgatttttcaaatgttttggtatttcctaataggattag |
633 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15180897 |
gggtgatttttcaaatgttttggtgtttcctaataggattag |
15180938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 629 - 669
Target Start/End: Original strand, 15180963 - 15181003
Alignment:
| Q |
629 |
attagagggaccaaagtttgttgcacattcagtgagtaatg |
669 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15180963 |
attagaaggaccaaagtttgttgcacattcagtgagtaatg |
15181003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 9e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 201 - 633
Target Start/End: Complemental strand, 38859387 - 38858955
Alignment:
| Q |
201 |
caggtgtgcattgttataacaaagcaacaggttttggtggaattggaattttgttgaagttagcagggaattcacaaacaagaattgataattgttacat |
300 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| ||||| || || || || || |||| || ||||| ||||| ||| |||||||| || ||||| || |
|
|
| T |
38859387 |
caggggtgcattgttataacaaagcagcaggatttggaggtataggtatcttagtgaaattggcaggaaattctttaactagaattgacaactgttatat |
38859288 |
T |
|
| Q |
301 |
ggattataattctatagtcatggaagatcctgttcaagttcatgttactaatggttt-tttcttaggggatgctaatattgttttgaagtcaattaaagg |
399 |
Q |
| |
|
|||||||| | |||||| | |||||| ||||||||||||||||| |||||| || | |||||| ||||||||||||||| | | ||| | | |||| |
|
|
| T |
38859287 |
ggattatactggtatagtaacggaagaccctgttcaagttcatgtcactaattgtctatttctt-ggggatgctaatattttaataaaggctgctgaagg |
38859189 |
T |
|
| Q |
400 |
gaaagtttatggtttaaatattgttaacaatatgtttagtggaaaccctaataataatgttccaattgtaaaattagatgggggatttagtaacattgat |
499 |
Q |
| |
|
|| ||| ||||| || || || | |||||||| | ||| | |||||||| || ||||||||||||| |||| ||| ||||||||| ||||| |
|
|
| T |
38859188 |
tcaaattttgggtttgaacatagtggataatatgttcaatggtgatcctaataagaaggttccaattgtaagtctagaagggcaatttagtaatgttgat |
38859089 |
T |
|
| Q |
500 |
caagtggtgattgataggaacaatgtgattggtatgattttaagatcaaccgttgggaagttgaatgtggatggtaatggcacaaaatgggtgggtgatt |
599 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||| || |||||||| ||||| ||||| | |||| ||||||||||||||| |||| || ||||| |
|
|
| T |
38859088 |
caagtggtgattgatagaaacaatgtgaatggtatgggcttgagatcaacggttggtaagttaactgtgagtggtaatggcacaaagtgggaggctgatt |
38858989 |
T |
|
| Q |
600 |
tttcaaatgttttggtatttcctaataggattag |
633 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| |
|
|
| T |
38858988 |
tttcatcagttttggtatttcctaatcggattag |
38858955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 38859568 - 38859516
Alignment:
| Q |
42 |
catgaaaccttcatatcaagtagttttcttggacaacactcaacagtcggcgg |
94 |
Q |
| |
|
||||| || |||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
38859568 |
catgagacattcatatcaagttgttttcttggacaacactcaacagttggcgg |
38859516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University