View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14259_high_20 (Length: 314)
Name: NF14259_high_20
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14259_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 23 - 297
Target Start/End: Complemental strand, 33093596 - 33093322
Alignment:
| Q |
23 |
gacatttatagacaccaaatcgcgaagatatggatacaacattgaggagttgtcatcatcattcaaaaactttgccttttgaagatttagatgctgcaca |
122 |
Q |
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| T |
33093596 |
gacatttatagacaccaaatcgcgaagatatggatacaacattgaggagttgtcatcatcattcaaaaactttgcattttgaagatttagatgctgcaca |
33093497 |
T |
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| Q |
123 |
aatctacactttgacaagaaataagagatcccgaaatatgtatattcgcagcaatcttgaaggacaaggttccttaaaggaagatcttcatttgctacac |
222 |
Q |
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| T |
33093496 |
aatctacactttgacaagaaataagagatcccgaaatatgtatattcgcagcaatcttgaaggacaaggttccttaaaggaagatcttcatttgctacag |
33093397 |
T |
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| Q |
223 |
atataagcatatcatcagtaacacatgaaagtgacaaatcaagatgggttaagtgtttcaaactcaccaacgaat |
297 |
Q |
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| T |
33093396 |
agataagcatatcatcagtaacacatgaaagtgacaaatcaagatgggttaagtgtttcaaactcaccaacgaat |
33093322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 206
Target Start/End: Complemental strand, 33708626 - 33708500
Alignment:
| Q |
80 |
atcattcaaaaactttgccttttgaagatttagatgctgcacaaatctacactttgacaagaaataagagatcccgaaatatgtatattcgcagcaatct |
179 |
Q |
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|||||||||||||||||| ||||| || ||||||||||| | ||| |||||||||||||||| ||||||| ||| ||| ||||||| ||||| | || |
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| T |
33708626 |
atcattcaaaaactttgcacgttgaatatctagatgctgcagagatcgacactttgacaagaaacaagagataccggtataagtatattggcagcgacct |
33708527 |
T |
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| Q |
180 |
tgaaggacaaggttccttaaaggaaga |
206 |
Q |
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| T |
33708526 |
tggaggacaagtttcctcaaaggaaga |
33708500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 212
Target Start/End: Complemental strand, 36810625 - 36810493
Alignment:
| Q |
80 |
atcattcaaaaactttgccttttgaagatttagatgctgcacaaatctacactttgacaagaaataagagatcccgaaatatgtatattcgcagcaatct |
179 |
Q |
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|||||||||||||||||| | |||||||| |||| |||| | ||||| ||||||||||| | |||||||||||| ||||||||| | | |||||||| |
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| T |
36810625 |
atcattcaaaaactttgcatcttgaagatctagaagctgtagaaatcgacactttgacagtagataagagatcccatgatatgtataattgaagcaatct |
36810526 |
T |
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| Q |
180 |
tgaaggacaaggttccttaaaggaagatcttca |
212 |
Q |
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|| |||| ||| | ||| ||||||||| ||||| |
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| T |
36810525 |
tggaggataagttccctcaaaggaagagcttca |
36810493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 33714461 - 33714390
Alignment:
| Q |
80 |
atcattcaaaaactttgccttttgaagatttagatgctgcacaaatctacactttgacaagaaataagagat |
151 |
Q |
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|||||||||||||||||| |||||||| ||||||||||| | ||| ||| |||||||||||| ||||||| |
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| T |
33714461 |
atcattcaaaaactttgcacattgaagatctagatgctgcagagatcgacaatttgacaagaaacaagagat |
33714390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 37580429 - 37580306
Alignment:
| Q |
80 |
atcattcaaaaactttgccttttgaagatttagatgctgcacaaatctacactttgacaagaaataagagatcccgaaatatgtatattcgcagcaatct |
179 |
Q |
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||||||||||||| |||| ||||||| || |||||||| || || |||||||||||| |||||| | ||||| ||||||| || | | |||||||| |
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| T |
37580429 |
atcattcaaaaacgttgctttttgaatatctagatgcttcagtgattgacactttgacaataaataatatatcccagaatatgtgtagttggagcaatct |
37580330 |
T |
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| Q |
180 |
tgaaggacaaggttccttaaagga |
203 |
Q |
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| |||||||| ||||| |||||| |
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| T |
37580329 |
ttgaggacaagtttcctcaaagga |
37580306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 18723944 - 18723872
Alignment:
| Q |
83 |
attcaaaaactttgccttttgaagatttagatgctgcacaaatctacactttgacaagaaataagagatcccg |
155 |
Q |
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||||||||| |||| |||| ||||| |||||| |||| ||||| |||||||||||||| ||||||||||||| |
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| T |
18723944 |
attcaaaaagattgcattttaaagatctagatgttgcagaaatcgacactttgacaagagataagagatcccg |
18723872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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