View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14259_high_26 (Length: 243)
Name: NF14259_high_26
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14259_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 34781663 - 34781441
Alignment:
| Q |
1 |
ctccaggacacatccttcttccagacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgaagctgcttcaccttcaccaacattttctat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34781663 |
ctccaggacacatccttcttccagacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgaagctgcttcaccttcaccaacattttctat |
34781564 |
T |
|
| Q |
101 |
aaacctctctggacgaaattccaatggctttacccaatattttgggtctcttcccactgcccagacattgaaaagtattagtgctccttctggaatcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34781563 |
gaacctctctggacgaaattccaatggctttacccaatattttgggtctcttcccactgcccagacattgaaaagtattagtgctccttctggaaccaca |
34781464 |
T |
|
| Q |
201 |
tacccgtcgatctcacactcttg |
223 |
Q |
| |
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||||||||||||||||| ||||| |
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| T |
34781463 |
tacccgtcgatctcacattcttg |
34781441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 34754546 - 34754771
Alignment:
| Q |
1 |
ctccaggacacatccttcttccagacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgaagctgcttcaccttcaccaacattttctat |
100 |
Q |
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||||||||||||| || ||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34754546 |
ctccaggacacattctccttccggacccaaatggtagaagttggaaatgctgacccctaagatcaattgaagctgcttcaccttcaccaacattttctat |
34754645 |
T |
|
| Q |
101 |
aaacctctctggacgaaattccaatggctttacccaatattttgggtctcttcccactgcccagacattgaaaagtattagtgctccttctggaatcaca |
200 |
Q |
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| T |
34754646 |
aaacctctctggacgaaattccaatggctttacccaatattttgggtctcttcccactgcccagacattgaaaagtattagtgctccttctggaatcaca |
34754745 |
T |
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| Q |
201 |
tacccgtcgatctcacactcttgagt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34754746 |
tacccgtcgatctcacactcttgagt |
34754771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34762525 - 34762752
Alignment:
| Q |
1 |
ctccaggacacatccttcttccagacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgaagctgcttcaccttcacc------aacatt |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34762525 |
ctccaggacacatccttcttccagacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgaagctgcttcaccttcaccttggcttgcatt |
34762624 |
T |
|
| Q |
95 |
ttctataaacctctctggacgaaattccaatggctttacccaatattttgggtctcttcccactgcccagacattgaaaagtattagtgctccttctgga |
194 |
Q |
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||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |||||||||||||| | ||||| || || |
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| T |
34762625 |
ttctaagaacctctctggacgaaattccaatggtttttcccaatattttgggtctcttcccacttgccatacattgaaaagtatcaaagctccctccggg |
34762724 |
T |
|
| Q |
195 |
atcacatacccgtcgatctcacactctt |
222 |
Q |
| |
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|||||||| || | |||||||||||||| |
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| T |
34762725 |
atcacataaccattgatctcacactctt |
34762752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 23244718 - 23244639
Alignment:
| Q |
3 |
ccaggacacatccttcttccagacccaaatggtagaagtgtgaaatgttgacccctaagatcaattgaagctgcttcacc |
82 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||| |||||||| ||||||| |||||||||| || ||||||| |
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| T |
23244718 |
ccaggacacattcttcttccagatccaaatggtagaagttgaaaatgttgtcccctaacatcaattgaatctccttcacc |
23244639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9381243 - 9381276
Alignment:
| Q |
1 |
ctccaggacacatccttcttccagacccaaatgg |
34 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
9381243 |
ctccaggacacatccttcttcctgacccaaatgg |
9381276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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