View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14259_high_28 (Length: 230)

Name: NF14259_high_28
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14259_high_28
NF14259_high_28
[»] chr4 (24 HSPs)
chr4 (7-140)||(24319231-24319364)
chr4 (9-140)||(7611877-7612008)
chr4 (9-140)||(7612213-7612344)
chr4 (13-140)||(40436625-40436753)
chr4 (9-136)||(3757136-3757264)
chr4 (9-140)||(42414332-42414464)
chr4 (9-140)||(34277131-34277262)
chr4 (9-140)||(47310195-47310325)
chr4 (20-140)||(26161196-26161315)
chr4 (9-139)||(31879258-31879392)
chr4 (9-140)||(42430177-42430308)
chr4 (9-107)||(670575-670673)
chr4 (9-139)||(46171912-46172046)
chr4 (9-139)||(6582599-6582733)
chr4 (34-136)||(8738477-8738579)
chr4 (19-140)||(23695695-23695816)
chr4 (9-119)||(47462625-47462735)
chr4 (51-140)||(48315309-48315398)
chr4 (20-100)||(31567946-31568026)
chr4 (9-139)||(12389428-12389562)
chr4 (59-139)||(40143079-40143159)
chr4 (35-140)||(40336016-40336120)
chr4 (20-139)||(20580781-20580903)
chr4 (90-139)||(47996848-47996898)
[»] chr2 (6 HSPs)
chr2 (9-140)||(21352101-21352233)
chr2 (9-139)||(29772386-29772515)
chr2 (9-139)||(2153741-2153875)
chr2 (9-140)||(42295594-42295724)
chr2 (9-113)||(22596553-22596658)
chr2 (9-108)||(10997442-10997541)
[»] chr7 (10 HSPs)
chr7 (9-140)||(8937571-8937702)
chr7 (34-140)||(29987802-29987909)
chr7 (12-139)||(6713996-6714123)
chr7 (9-140)||(31279963-31280095)
chr7 (9-140)||(36582306-36582438)
chr7 (9-139)||(27856750-27856883)
chr7 (9-139)||(35086642-35086776)
chr7 (21-139)||(45919794-45919916)
chr7 (9-136)||(10166337-10166471)
chr7 (59-139)||(40305642-40305722)
[»] chr5 (14 HSPs)
chr5 (11-140)||(14718356-14718482)
chr5 (12-139)||(12291148-12291275)
chr5 (9-140)||(27110838-27110970)
chr5 (9-140)||(1495670-1495801)
chr5 (52-137)||(40044355-40044440)
chr5 (9-140)||(41061418-41061548)
chr5 (9-139)||(31069384-31069518)
chr5 (21-140)||(35449438-35449557)
chr5 (9-139)||(26818096-26818230)
chr5 (9-67)||(10416044-10416102)
chr5 (12-77)||(4986381-4986446)
chr5 (11-108)||(33746040-33746138)
chr5 (9-89)||(17342260-17342341)
chr5 (94-139)||(10415958-10416003)
[»] chr8 (14 HSPs)
chr8 (9-140)||(4267538-4267670)
chr8 (9-140)||(3774008-3774140)
chr8 (12-127)||(34191278-34191394)
chr8 (11-140)||(3289913-3290045)
chr8 (21-140)||(12523005-12523123)
chr8 (9-139)||(14334201-14334335)
chr8 (9-128)||(253405-253522)
chr8 (9-128)||(662336-662453)
chr8 (9-128)||(848134-848251)
chr8 (10-102)||(27805202-27805294)
chr8 (9-139)||(36368746-36368878)
chr8 (34-139)||(10903269-10903378)
chr8 (73-140)||(42199924-42199990)
chr8 (34-125)||(10182997-10183089)
[»] chr1 (15 HSPs)
chr1 (11-140)||(24614966-24615096)
chr1 (9-139)||(33719382-33719514)
chr1 (9-138)||(38855971-38856102)
chr1 (9-140)||(31091851-31091979)
chr1 (9-137)||(35671884-35672012)
chr1 (9-139)||(790353-790487)
chr1 (9-139)||(51236048-51236182)
chr1 (34-136)||(50551159-50551261)
chr1 (11-139)||(22871509-22871641)
chr1 (9-77)||(28655811-28655879)
chr1 (34-139)||(11619737-11619844)
chr1 (20-127)||(39193398-39193503)
chr1 (59-139)||(34588677-34588759)
chr1 (59-139)||(17304845-17304925)
chr1 (90-139)||(8065604-8065654)
[»] chr6 (6 HSPs)
chr6 (9-140)||(4463966-4464094)
chr6 (9-140)||(3900922-3901053)
chr6 (20-103)||(10484199-10484282)
chr6 (27-136)||(10386333-10386442)
chr6 (9-140)||(13531483-13531615)
chr6 (9-139)||(33702829-33702963)
[»] chr3 (7 HSPs)
chr3 (9-140)||(1030654-1030785)
chr3 (9-139)||(13857319-13857449)
chr3 (9-139)||(10222738-10222872)
chr3 (9-139)||(50309267-50309401)
chr3 (34-140)||(19997568-19997674)
chr3 (57-137)||(45701203-45701283)
chr3 (57-136)||(27167682-27167761)
[»] scaffold0140 (1 HSPs)
scaffold0140 (9-139)||(15677-15804)
[»] scaffold0717 (1 HSPs)
scaffold0717 (34-139)||(5679-5784)
[»] scaffold0396 (1 HSPs)
scaffold0396 (9-113)||(1068-1172)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 24319364 - 24319231
Alignment:
Q  7 tcaatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaa 106  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24319364 tcaatattaataatacacaaatacggcaaaagaataggtttaatgtaaaatatattaaaaaattaaaattacaatatgaaatttatcgattattttttaa 24319265  T
Q  107 acttatgaagtaacaataatatagattaaattag 140  Q
    ||||||||||||||||||||||||||||||||||    
T  24319264 acttatgaagtaacaataatatagattaaattag 24319231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 7612008 - 7611877
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaac 108  Q
    |||||| ||| ||||||||||| | |||||||||||||| ||||||| ||||||||||| |||| |||||| |||||||  |||||||||||||||||||    
T  7612008 aatattcatattacacaaacactgtaaaataataggtttgatgtaaaatatattaaaaagttaatattacattatgaaaattatcgattattttttaaac 7611909  T
Q  109 ttatgaagtaacaataatatagattaaattag 140  Q
     |||||||||| ||||||||||||||||||||    
T  7611908 atatgaagtaataataatatagattaaattag 7611877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 7612344 - 7612213
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaac 108  Q
    |||||| ||| ||||||||||| | |||||||||||||| ||||||| ||||||||||| |||| |||||| |||||||  |||||||||||||||||||    
T  7612344 aatattcatattacacaaacactgtaaaataataggtttgatgtaaaatatattaaaaagttaatattacattatgaaaattatcgattattttttaaac 7612245  T
Q  109 ttatgaagtaacaataatatagattaaattag 140  Q
     |||||||||| ||||||||||||||||||||    
T  7612244 atatgaagtaataataatatagattaaattag 7612213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 40436753 - 40436625
Alignment:
Q  13 ttaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaa-ttaaaattacaatatgaaatatatcgattattttttaaactta 111  Q
    |||||| ||||||||||||| ||||||||| |||| ||| ||| |||||||||||| ||||||||||| ||| |||  ||||||||||||||||||| ||    
T  40436753 ttaatattacacaaacacggtaaaataataagtttgatgcaaaatatattaaaaaaattaaaattacagtattaaaattatcgattattttttaaacata 40436654  T
Q  112 tgaagtaacaataatatagattaaattag 140  Q
    |||||||| ||||||||||||||||||||    
T  40436653 tgaagtaataataatatagattaaattag 40436625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 3757264 - 3757136
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaat-taaaattacaatatgaaatatatcgattattttttaaa 107  Q
    |||||||||| |||||||||| || |||||||||||||| ||| ||| ||||||||||||  |||||||| | |||||||  ||||||||||||||||||    
T  3757264 aatattaatattacacaaacagggtaaaataataggtttgatgcaaaatatattaaaaaagataaaattatagtatgaaaattatcgattattttttaaa 3757165  T
Q  108 cttatgaagtaacaataatatagattaaa 136  Q
    | |||||||||| ||||||||||||||||    
T  3757164 catatgaagtaataataatatagattaaa 3757136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 42414332 - 42414464
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaat-taaaattacaatatgaaatatatcgattattttttaaa 107  Q
    |||||||||| |||| ||||| || |||||||||||||| ||| ||| ||||||||||||  |||||||| | |||||||  ||||||||||||||||||    
T  42414332 aatattaatattacagaaacagggtaaaataataggtttgatgcaaaatatattaaaaaagataaaattatagtatgaaaattatcgattattttttaaa 42414431  T
Q  108 cttatgaagtaacaataatatagattaaattag 140  Q
    | |||||||||| ||||||||||||||||||||    
T  42414432 catatgaagtaataataatatagattaaattag 42414464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 34277262 - 34277131
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaat-taaaattacaatatgaaatatatcgattattttttaaa 107  Q
    |||||||||| |||||||||| || |||||||||||||| ||| ||| ||||||||||||  |||||||| | |||||||  ||| ||||||||||||||    
T  34277262 aatattaatattacacaaaca-ggtaaaataataggtttgatgcaaaatatattaaaaaagataaaattatagtatgaaaattattgattattttttaaa 34277164  T
Q  108 cttatgaagtaacaataatatagattaaattag 140  Q
    | |||||||||| ||||||||||||||||||||    
T  34277163 catatgaagtaataataatatagattaaattag 34277131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 47310325 - 47310195
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaac 108  Q
    |||||||||| ||||||||||||| ||| ||||| |||| ||  ||| ||||||||||| ||||||||||| |||||||  |||||||||||||||||||    
T  47310325 aatattaatattacacaaacacggtaaa-taatatgtttgatacaaaatatattaaaaatttaaaattacagtatgaaaattatcgattattttttaaac 47310227  T
Q  109 ttatgaagtaacaataatatagattaaattag 140  Q
     ||||||| || ||||| ||||||||||||||    
T  47310226 atatgaaggaataataacatagattaaattag 47310195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 26161196 - 26161315
Alignment:
Q  20 tacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaacttatgaagtaa 119  Q
    |||| |||||||| |||||||||||||| ||  ||| |||||||| || ||||||||||| ||| |||  |||| |||||||||||||| ||||||||||    
T  26161196 tacataaacacggtaaaataataggtttgatcaaaa-tatattaagaatttaaaattacagtataaaaattatcaattattttttaaacatatgaagtaa 26161294  T
Q  120 caataatatagattaaattag 140  Q
     ||||||||||||||||||||    
T  26161295 taataatatagattaaattag 26161315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 31879392 - 31879258
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa--ta-tatcgattatttttt- 104  Q
    ||||||| || ||||||||||| | ||||||||| |||||||| ||| ||||||||||||| ||||||| | |||||||  || |||||||||||||||     
T  31879392 aatattattattacacaaacacagtaaaataataagtttaatgcaaaatatattaaaaaataaaaattatagtatgaaaattattatcgattattttttg 31879293  T
Q  105 aaacttatgaagtaacaataatatagattaaatta 139  Q
    |||  |||||||||| |||||||||||||||||||    
T  31879292 aaagatatgaagtaataataatatagattaaatta 31879258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 42430308 - 42430177
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaac 108  Q
    |||||||||| ||||||||||||| ||||||||| |||| ||| ||| ||||||||||| |||||||||    ||||||  ||||||||| |||| ||||    
T  42430308 aatattaatattacacaaacacggtaaaataatatgtttgatgcaaaatatattaaaaatttaaaattattgcatgaaaattatcgattaattttgaaac 42430209  T
Q  109 ttatgaagtaacaataatatagattaaattag 140  Q
     |||| ||| | ||||||||||||||||||||    
T  42430208 atatgtagtcataataatatagattaaattag 42430177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 670575 - 670673
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaa 107  Q
    |||||||||| |||| |||||| | |||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||  ||||||||||||| ||||    
T  670575 aatattaatattacataaacacagtaaaataataggttttatgcaaaatatattaagaaattaaaattacaatatgaaaattatcgattattttataaa 670673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 46171912 - 46172046
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa--ta-tatcgattatttttt- 104  Q
    ||||||| || ||||||||||| | ||||||||| |||||||| ||| ||||||||||||| ||||| | | |||||||  || |||||||||||||||     
T  46171912 aatattattattacacaaacacagtaaaataataagtttaatgcaaaatatattaaaaaataaaaataatagtatgaaaattattatcgattattttttg 46172011  T
Q  105 aaacttatgaagtaacaataatatagattaaatta 139  Q
    |||  |||||||||| |||||||||||||||||||    
T  46172012 aaatatatgaagtaataataatatagattaaatta 46172046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 6582599 - 6582733
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa---tatatcgattatttttt- 104  Q
    ||||||| || ||||||||||| | ||||||||| |||||||| ||| |||||||  |||| ||||||| | |||||||   | |||||||||||||||     
T  6582599 aatattattattacacaaacacagtaaaataataagtttaatgcaaaatatattatgaaataaaaattatagtatgaaaagttttatcgattattttttg 6582698  T
Q  105 aaacttatgaagtaacaataatatagattaaatta 139  Q
    |||  |||||||||| |||||||||||||||||||    
T  6582699 aaagatatgaagtaataataatatagattaaatta 6582733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 8738579 - 8738477
Alignment:
Q  34 aaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaacttatgaagtaacaataatatagatt 133  Q
    |||||||||||||| ||  ||| ||| || |||||||||||||||| |||||||   ||| ||| |||||||||| |||||||||| |||||||||||||    
T  8738579 aaaataataggtttgattcaaaatatttttaaaaattaaaattacattatgaaaatgatcaattgttttttaaacatatgaagtaataataatatagatt 8738480  T
Q  134 aaa 136  Q
    |||    
T  8738479 aaa 8738477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 23695695 - 23695816
Alignment:
Q  19 atacacaaacacggcaaaataataggtttaatgtaaagtatatt-aaaaaattaaaattacaatatgaaatatatcgattattttttaaacttatgaagt 117  Q
    |||||||||||  |||||||||||||||| ||| ||| |||||| ||||||||||||||||| |||||||   |||||||||||||| ||| ||| ||      
T  23695695 atacacaaacaatgcaaaataataggtttgatgcaaaatatattaaaaaaattaaaattacagtatgaaaatcatcgattatttttt-aacatattaaag 23695793  T
Q  118 aacaataatatagattaaattag 140  Q
    || ||||| ||||||||||||||    
T  23695794 aataataacatagattaaattag 23695816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 47462625 - 47462735
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaac 108  Q
    |||||||||| |||||||||| || ||| ||||| |||| ||| ||| ||||||||||  ||||||||||| ||| |||  |||||||||||||||||||    
T  47462625 aatattaatattacacaaacatggtaaagtaatatgtttgatgcaaaatatattaaaatgttaaaattacagtataaaaattatcgattattttttaaac 47462724  T
Q  109 ttatgaagtaa 119  Q
     || |||||||    
T  47462725 atacgaagtaa 47462735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 48315309 - 48315398
Alignment:
Q  51 gtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaacttatgaagtaacaataatatagattaaattag 140  Q
    ||||| ||||||||  || ||||||||||||||||||  ||| ||||||| ||||||| |||||||||  ||||||||||||||||||||    
T  48315309 gtaaaatatattaacgaaataaaattacaatatgaaaattattgattattatttaaacatatgaagtagtaataatatagattaaattag 48315398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 31567946 - 31568026
Alignment:
Q  20 tacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattatt 100  Q
    |||||||||| || |||||||||||||| ||| ||| |||| |||||||||||||||||| |||||||  |||||||||||    
T  31567946 tacacaaacatggtaaaataataggtttgatgcaaaatatactaaaaaattaaaattacagtatgaaaattatcgattatt 31568026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 12389428 - 12389562
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa--tat-atcgattatttttt- 104  Q
    ||||||| || || |||||||| | ||||||||| |||||||| ||| |||||||| |||| ||||||||| |||||||  ||| ||||||||||||||     
T  12389428 aatattattattatacaaacacagtaaaataataagtttaatgcaaaatatattaagaaataaaaattacagtatgaaaattattatcgattattttttg 12389527  T
Q  105 aaacttatgaagtaacaataatatagattaaatta 139  Q
    |||  || ||| ||| |||||||||||||||||||    
T  12389528 aaagatacgaattaataataatatagattaaatta 12389562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 40143159 - 40143079
Alignment:
Q  59 tattaaaaaattaaaattacaatatgaaatatatcgattatttttt-aaacttatgaagtaacaataatatagattaaatta 139  Q
    |||||| |||| ||||||||| |||||||| ||||||||| ||||| |||  |||||||||| |||||||||||||||||||    
T  40143159 tattaagaaataaaaattacagtatgaaat-tatcgattaatttttgaaagatatgaagtaataataatatagattaaatta 40143079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 40336016 - 40336120
Alignment:
Q  35 aaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaacttatgaagtaacaataatatagatta 134  Q
    |||||||| |||| ||| ||| |||||||| || ||||||||||| || ||||  ||| ||||||||||||||  |||||||||| |||| |||| ||||    
T  40336016 aaataataagtttgatgcaaaatatattaagaa-ttaaaattacagtaagaaaattattgattattttttaaatatatgaagtaataatagtataaatta 40336114  T
Q  135 aattag 140  Q
    ||||||    
T  40336115 aattag 40336120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 20580903 - 20580781
Alignment:
Q  20 tacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaacttatga---ag 116  Q
    |||||||| | || |||||||| | ||| ||| ||| ||||||| ||||||||||||||| | |||||  |||||||| ||||| ||||  ||||   |     
T  20580903 tacacaaatatggtaaaataattgatttgatgcaaaatatattataaaattaaaattacagtttgaaaattatcgattctttttgaaacacatgaaataa 20580804  T
Q  117 taacaataatatagattaaatta 139  Q
    ||| |||||||||||||||||||    
T  20580803 taataataatatagattaaatta 20580781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 47996848 - 47996898
Alignment:
Q  90 tatcgattatttttt-aaacttatgaagtaacaataatatagattaaatta 139  Q
    ||||||||||||||| |||  |||||||||| |||||||||||||||||||    
T  47996848 tatcgattattttttgaaagatatgaagtaataataatatagattaaatta 47996898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 21352101 - 21352233
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaat-taaaattacaatatgaaatatatcgattattttttaaa 107  Q
    |||||||||| |||||||||| || |||||||||||||| ||| ||| ||||||||||||  |||||||| | |||||||  ||||||||||||||||||    
T  21352101 aatattaatattacacaaacagggtaaaataataggtttgatgcaaaatatattaaaaaagataaaattatagtatgaaaattatcgattattttttaaa 21352200  T
Q  108 cttatgaagtaacaataatatagattaaattag 140  Q
    | |||||||||| ||||||||||||||||||||    
T  21352201 catatgaagtaataataatatagattaaattag 21352233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 29772515 - 29772386
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaac 108  Q
    |||||||||| |||||||||||  |||| |||||||||  ||| ||| ||||||| |||||||||| ||||  ||||||  |||||||| ||||||||||    
T  29772515 aatattaatattacacaaacacatcaaa-taataggttcgatgcaaaatatattataaaattaaaagtacagaatgaaagttatcgattcttttttaaac 29772417  T
Q  109 ttatgaagtaacaataatatagattaaatta 139  Q
     ||| |||||| |||||||||||||||||||    
T  29772416 atataaagtaataataatatagattaaatta 29772386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 2153875 - 2153741
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa--ta-tatcgattatttttta 105  Q
    ||||||| || ||||||||||| | ||||||||| |||||||| ||| |||||||| |||| ||||||| | |||||||  || |||||||||||||||     
T  2153875 aatattattattacacaaacacagtaaaataataagtttaatgcaaaatatattaagaaataaaaattatagtatgaaaattattatcgattattttttg 2153776  T
Q  106 aac-ttatgaagtaacaataatatagattaaatta 139  Q
    |||  |||||||||| |||||||||||||||||||    
T  2153775 aacgatatgaagtaataataatatagattaaatta 2153741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 42295594 - 42295724
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaac 108  Q
    |||||||||| |||||||||| || |||||||||||||| ||| ||| ||||||||||| |||||||||   |||||||  |||| ||||||||| ||||    
T  42295594 aatattaatattacacaaacaaggtaaaataataggtttgatgcaaaatatattaaaaagttaaaattattgtatgaaaattatcaattatttttgaaac 42295693  T
Q  109 ttatgaagtaacaataatatagattaaattag 140  Q
     |||| ||| | |||||| |||||||||||||    
T  42295694 atatgtagtcataataat-tagattaaattag 42295724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 22596658 - 22596553
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaa-ttaaaattacaatatgaaatatatcgattattttttaaa 107  Q
    |||||||||| ||||||||||||| |||||||||||||| ||| ||| ||| |||||||| |||||||||  ||||||||  ||||||||| |||| |||    
T  22596658 aatattaatattacacaaacacggtaaaataataggtttgatgcaaaatatgttaaaaaatttaaaattattatatgaaaattatcgattaattttgaaa 22596559  T
Q  108 cttatg 113  Q
    | ||||    
T  22596558 catatg 22596553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 10997541 - 10997442
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaat-taaaattacaatatgaaatatatcgattattttttaaa 107  Q
    |||||||||| |||| |||||||  ||| |||||||||| ||| ||| |||| |||||||| |||||||| | |||||||  ||||||||||||||||||    
T  10997541 aatattaatattacataaacacgataaa-taataggtttgatgcaaaatataataaaaaatataaaattatagtatgaaaactatcgattattttttaaa 10997443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 8937571 - 8937702
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaac 108  Q
    |||||||||  ||||||||||| | |||||||||||||| ||| ||| ||||||||||| |||| |||||| |||||||  ||||||||||||||||||     
T  8937571 aatattaattttacacaaacactgtaaaataataggtttgatgcaaaatatattaaaaagttaatattacattatgaaaattatcgattattttttaaat 8937670  T
Q  109 ttatgaagtaacaataatatagattaaattag 140  Q
     |||||||||| ||||||||||||||||||||    
T  8937671 atatgaagtaataataatatagattaaattag 8937702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 29987802 - 29987909
Alignment:
Q  34 aaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa-tatatcgattattttttaaacttatgaagtaacaataatatagat 132  Q
    |||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||| |||||||||| ||||||||||||    
T  29987802 aaaataataggttttatgcaaaatatattaaaaaattaaaattacagtatgaaaatttatcgattattttttaaacatatgaagtaataataatatagat 29987901  T
Q  133 taaattag 140  Q
    ||||||||    
T  29987902 taaattag 29987909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 6713996 - 6714123
Alignment:
Q  12 attaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaactta 111  Q
    ||||||| |||||| |||||| ||||||||| |||| ||| ||| ||||||||||||||||||||||| |||||||  ||| ||||||||||||||  ||    
T  6713996 attaatattacacagacacggtaaaataataagtttgatgcaaaatatattaaaaaattaaaattacagtatgaaaattattgattattttttaaagata 6714095  T
Q  112 tgaagtaacaataatatagattaaatta 139  Q
    |||||||| | |||||||||||||||||    
T  6714096 tgaagtaatattaatatagattaaatta 6714123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 31279963 - 31280095
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatatt-aaaaaattaaaattacaatatgaaatatatcgattattttttaaa 107  Q
    |||||||||| ||||||||||||| |||||||||||||| ||| ||| |||||| |||||||||||||||   |||||||  ||||||||| |||| |||    
T  31279963 aatattaatattacacaaacacggtaaaataataggtttgatgcaaaatatattaaaaaaattaaaattattgtatgaaaattatcgattaattttgaaa 31280062  T
Q  108 cttatgaagtaacaataatatagattaaattag 140  Q
    | |||| ||| | ||||||||||||||||||||    
T  31280063 catatgtagtcataataatatagattaaattag 31280095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 36582306 - 36582438
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaa-aattaaaattacaatatgaaatatatcgattattttttaaa 107  Q
    |||||||||| ||||||| ||||| |||||||||||||| ||| ||| ||||||||||   |||||||||   ||||||| |||||||||| |||| |||    
T  36582306 aatattaatattacacaatcacggtaaaataataggtttgatgcaaaatatattaaaatttttaaaattattgtatgaaaaatatcgattaattttgaaa 36582405  T
Q  108 cttatgaagtaacaataatatagattaaattag 140  Q
    | |||| ||| | ||||||||||||||||||||    
T  36582406 catatgtagtcataataatatagattaaattag 36582438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 27856750 - 27856883
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa--tat-atcgattatttttta 105  Q
    ||||||| || ||||||||||| | ||||||||| |||||| | ||| |||||||| |||| | ||||||| |||||||  ||| |||||||||||| ||    
T  27856750 aatattattattacacaaacacagtaaaataataagtttaaggcaaaatatattaagaaataagaattacagtatgaaaattattatcgattattttata 27856849  T
Q  106 aacttatgaagtaacaataatatagattaaatta 139  Q
    ||  |||||||||| |||||||||||||||||||    
T  27856850 aagatatgaagtaataataatatagattaaatta 27856883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 35086642 - 35086776
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa--ta-tatcgattatttttt- 104  Q
    ||||||| || ||||||||||| | ||||||||| |||||||| ||| ||| |||| |||| ||||||| | |||||||  || |||||||||||||||     
T  35086642 aatattattattacacaaacacagtaaaataataagtttaatgcaaaatatcttaagaaataaaaattatagtatgaaaattattatcgattattttttg 35086741  T
Q  105 aaacttatgaagtaacaataatatagattaaatta 139  Q
    |||  |||||||||| |||||||||||||||||||    
T  35086742 aaagatatgaagtaataataatatagattaaatta 35086776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 45919916 - 45919794
Alignment:
Q  21 acacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa--tat-atcgattatttttt-aaacttatgaag 116  Q
    |||||||||| | ||||||||| |||||||| ||| |||||||| |||| ||||||| | |||||||  ||| |||||||||||||| |||  |||||||    
T  45919916 acacaaacacagtaaaataataagtttaatgcaaaatatattaagaaataaaaattatagtatgaaaattattatcgattattttttgaaagatatgaag 45919817  T
Q  117 taacaataatatagattaaatta 139  Q
    ||| |||||||||||||||||||    
T  45919816 taataataatatagattaaatta 45919794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 10166471 - 10166337
Alignment:
Q  9 aatattaataatacacaaacacggcaa---aataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa--ta-tatcgattatttt 102  Q
    ||||||| || ||||||||||| | ||   ||||||| |||||||| ||| |||||||| |||| ||||||| | |||||||  || |||||||||||||    
T  10166471 aatattattattacacaaacacagtaaaataataataagtttaatgcaaaatatattaagaaataaaaattatactatgaaaattattatcgattatttt 10166372  T
Q  103 tt-aaacttatgaagtaacaataatatagattaaa 136  Q
    || |||  |||||||||| ||||||||||||||||    
T  10166371 ttgaaagatatgaagtaataataatatagattaaa 10166337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 40305722 - 40305642
Alignment:
Q  59 tattaaaaaattaaaattacaatatgaaatatatcgattattttttaaacttatgaagtaacaataatatagattaaatta 139  Q
    |||||||||||||| ||||||  ||||||   ||||||||| ||| |||| || ||||||  |||||||||||||||||||    
T  40305722 tattaaaaaattaacattacacaatgaaaataatcgattatatttgaaacatacgaagtagtaataatatagattaaatta 40305642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 14718482 - 14718356
Alignment:
Q  11 tattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaactt 110  Q
    |||||||||||||||||||||||||| | |||||||| ||  ||| |||||||||| |||||||||||||||||| |  ||||||||||||||||||| |    
T  14718482 tattaataatacacaaacacggcaaagttataggtttgatacaaaatatattaaaatattaaaattacaatatgacaattatcgattattttttaaacat 14718383  T
Q  111 atgaagtaacaataatatagattaaattag 140  Q
    |||||||   ||||||||||||||||||||    
T  14718382 atgaagt---aataatatagattaaattag 14718356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 12291148 - 12291275
Alignment:
Q  12 attaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaactta 111  Q
    ||||||| ||||||||||||  |||||||||||||| ||| ||| |||||||||||||||||| || | |||||||  ||||||||||||||||||| ||    
T  12291148 attaatattacacaaacacgataaaataataggtttgatgcaaaatatattaaaaaattaaaactagagtatgaaaattatcgattattttttaaacata 12291247  T
Q  112 tgaagtaacaataatatagattaaatta 139  Q
    | |||||| |||||| ||||||||||||    
T  12291248 taaagtaataataatgtagattaaatta 12291275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 27110970 - 27110838
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaat-taaaattacaatatgaaatatatcgattattttttaaa 107  Q
    |||||||||| |||||||||| || | |||||||||||| ||| ||| ||||||||||||  |||||||| | |||||||  ||| ||||||||||||||    
T  27110970 aatattaatattacacaaacatggtagaataataggtttgatgcaaaatatattaaaaaagataaaattatagtatgaaaattattgattattttttaaa 27110871  T
Q  108 cttatgaagtaacaataatatagattaaattag 140  Q
    | |||||||||| ||||||||||||||||||||    
T  27110870 catatgaagtaataataatatagattaaattag 27110838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 1495670 - 1495801
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaac 108  Q
    |||||||||| |||||||||||||  ||||||||||||| ||| ||| |||||||| || |||||||||   |||||||  |||| ||||||||||||||    
T  1495670 aatattaatattacacaaacacggtgaaataataggtttgatgcaaaatatattaagaagttaaaattattgtatgaaaattatcaattattttttaaac 1495769  T
Q  109 ttatgaagtaacaataatatagattaaattag 140  Q
     |||| ||| | ||||||||||||||||||||    
T  1495770 atatgtagtcataataatatagattaaattag 1495801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 40044440 - 40044355
Alignment:
Q  52 taaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaacttatgaagtaacaataatatagattaaat 137  Q
    |||| ||||||||||||||||||||| | || ||||  ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  40044440 taaaatatattaaaaaattaaaattatagtaggaaaattatcgattattttttaaacatatgaagtaataataatatagattaaat 40044355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 41061548 - 41061418
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaat-taaaattacaatatgaaatatatcgattattttttaaa 107  Q
    |||||||||| |||||||| | || |||||||||||||| ||| ||| ||||||||||||  |||||||| | |||||||  ||| |||||||||| |||    
T  41061548 aatattaatattacacaaata-ggtaaaataataggtttgatgcaaaatatattaaaaaagataaaattatagtatgaaaattattgattattttt-aaa 41061451  T
Q  108 cttatgaagtaacaataatatagattaaattag 140  Q
    | |||||||||| ||||||||||||||||||||    
T  41061450 catatgaagtaataataatatagattaaattag 41061418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 31069384 - 31069518
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa--ta-tatcgattatttttt- 104  Q
    ||||||| || |||||||||||  |||||||||| |||||||| ||| |||||||| |||| ||||||| | |||||||  || |||||||||||||||     
T  31069384 aatattattattacacaaacacaacaaaataataagtttaatgcaaaatatattaagaaataaaaattatagtatgaaaattattatcgattattttttg 31069483  T
Q  105 aaacttatgaagtaacaataatatagattaaatta 139  Q
    |||  |||||||||| |||||||||||||||||||    
T  31069484 aaagatatgaagtaataataatatagattaaatta 31069518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 35449438 - 35449557
Alignment:
Q  21 acacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaacttatgaagtaac 120  Q
    ||||||||| || |||||||||||||| ||| ||| ||||||||||| |||||||||   |||||||  |||| ||||||||| |||| |||| ||| |     
T  35449438 acacaaacaaggtaaaataataggtttgatgcaaaatatattaaaaagttaaaattattgtatgaaaattatcaattatttttgaaacatatgtagtcat 35449537  T
Q  121 aataatatagattaaattag 140  Q
    ||||||||||||||||||||    
T  35449538 aataatatagattaaattag 35449557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 26818230 - 26818096
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa--tat-atcgattatttttt- 104  Q
    ||||||| || || |||||||| | ||||||||| |||||||| ||| |||||||| |||| ||||||| | |||||||  ||| ||||||||||||||     
T  26818230 aatattattattaaacaaacacagtaaaataataagtttaatgcaaaatatattaagaaataaaaattatagtatgaaaattattatcgattattttttg 26818131  T
Q  105 aaacttatgaagtaacaataatatagattaaatta 139  Q
    |||  |||||||||| |||||||||||||||||||    
T  26818130 aaagatatgaagtaataataatatagattaaatta 26818096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 10416102 - 10416044
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaa 67  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| ||| |||||||||||    
T  10416102 aatattaataatacacaaacacgtcaaaataataggtttgatgcaaaatatattaaaaa 10416044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 4986446 - 4986381
Alignment:
Q  12 attaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaatta 77  Q
    ||||||| ||||||||||||| |||||||||||||| ||  ||| |||||||||||||||||||||    
T  4986446 attaatattacacaaacacggtaaaataataggtttgatacaaaatatattaaaaaattaaaatta 4986381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 33746040 - 33746138
Alignment:
Q  11 tattaataatacacaaacacggcaaaataataggtttaatgtaaagtatatt-aaaaaattaaaattacaatatgaaatatatcgattattttttaaac 108  Q
    ||||| || ||||||||||||| |||||||||||| | ||||||| |||||| ||||||| |||||||||  ||||||  ||| |||| ||||||||||    
T  33746040 tattactattacacaaacacggtaaaataataggtgtgatgtaaaatatattaaaaaaatcaaaattacagcatgaaaattattgattgttttttaaac 33746138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 17342260 - 17342341
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtata-ttaaaaaattaaaattacaatatgaaata 89  Q
    |||||||||| ||||||||||| | |||||||||||||| ||  ||| |||| ||||||| || ||||||||||||| ||||    
T  17342260 aatattaatattacacaaacacagtaaaataataggtttgatacaaactatatttaaaaagttgaaattacaatatggaata 17342341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 10416003 - 10415958
Alignment:
Q  94 gattattttttaaacttatgaagtaacaataatatagattaaatta 139  Q
    ||||||||||||||  |||||||||| |||| ||||||||||||||    
T  10416003 gattattttttaaatatatgaagtaataatagtatagattaaatta 10415958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 4267670 - 4267538
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaat-taaaattacaatatgaaatatatcgattattttttaaa 107  Q
    |||||||||| |||||||||| || |||||||||||||| ||| ||| ||||||||||||  |||||||| | |||||||  ||| ||||||||||||||    
T  4267670 aatattaatattacacaaacagggtaaaataataggtttgatgcaaaatatattaaaaaagataaaattatagtatgaaaattattgattattttttaaa 4267571  T
Q  108 cttatgaagtaacaataatatagattaaattag 140  Q
    | |||||||||| ||||||||||||||||||||    
T  4267570 catatgaagtaataataatatagattaaattag 4267538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 3774140 - 3774008
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaat-taaaattacaatatgaaatatatcgattattttttaaa 107  Q
    |||||||||| |||||||||| || |||||||||||||| ||| ||| ||||||||||||  |||||||| | ||||||   |||||||||||||||||     
T  3774140 aatattaatattacacaaacagggtaaaataataggtttgatgcaaaatatattaaaaaagataaaattatagtatgaatattatcgattattttttaac 3774041  T
Q  108 cttatgaagtaacaataatatagattaaattag 140  Q
    | |||||||||| ||||||||||||||||||||    
T  3774040 catatgaagtaataataatatagattaaattag 3774008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 34191394 - 34191278
Alignment:
Q  12 attaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaa-ttaaaattacaatatgaaatatatcgattattttttaaactt 110  Q
    ||||||| |||| |||||||| |||||||||| ||| ||| ||| |||||||||||| ||||||||| |||||||||  ||||||||||||||||||| |    
T  34191394 attaatattacataaacacggtaaaataatagatttgatgcaaaatatattaaaaaaattaaaattaaaatatgaaaattatcgattattttttaaacat 34191295  T
Q  111 atgaagtaacaataata 127  Q
    ||||| |||||||||||    
T  34191294 atgaattaacaataata 34191278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 3290045 - 3289913
Alignment:
Q  11 tattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaa---aaaattaaaattacaatatgaaatatatcgattattttttaaa 107  Q
    ||||||||||||||||||| || ||||||||| |||| ||  ||| ||||||||   |||||||||||||||||||||||  |||||||||  |||||||    
T  3290045 tattaataatacacaaacaaggtaaaataatatgtttgatacaaactatattaaaaaaaaattaaaattacaatatgaaaattatcgattaagttttaaa 3289946  T
Q  108 cttatgaagtaacaataatatagattaaattag 140  Q
        |||||||| ||||||||||||||||||||    
T  3289945 tacttgaagtaataataatatagattaaattag 3289913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 12523005 - 12523123
Alignment:
Q  21 acacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaacttatgaagtaac 120  Q
    |||||||||||  ||||||||| |||||||| ||| ||||||| ||||||||||||| | |||||||  ||| |||| ||||||||||  |||||||||     
T  12523005 acacaaacacgataaaataatatgtttaatgcaaaatatattataaaattaaaattatagtatgaaaattatggattcttttttaaacacatgaagtaat 12523104  T
Q  121 aataatatagattaaattag 140  Q
    || |||||||||||||||||    
T  12523105 aa-aatatagattaaattag 12523123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 14334201 - 14334335
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa--tat-atcgattatttttt- 104  Q
    ||||||| || |||||||| || | ||||||||| |||||||| ||| |||||||| |||| ||||||| | |||||||  ||| ||||||||||||||     
T  14334201 aatattattattacacaaatacagtaaaataataagtttaatgcaaaatatattaagaaataaaaattatagtatgaaaattattatcgattattttttg 14334300  T
Q  105 aaacttatgaagtaacaataatatagattaaatta 139  Q
    |||  |||||||||| |||||||||||||||||||    
T  14334301 aaagatatgaagtaataataatatagattaaatta 14334335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 253405 - 253522
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaac 108  Q
    |||||||||| | ||||| ||||| ||||||||| |||| ||| |||  ||||||||| |||||||||||| |||||||  |||||||| ||| ||||||    
T  253405 aatattaatattgcacaa-cacggtaaaataatacgtttgatgcaaaacatattaaaatattaaaattacagtatgaaaattatcgatt-tttattaaac 253502  T
Q  109 ttatgaagtaacaataatat 128  Q
     |||||||||| ||||||||    
T  253503 atatgaagtaataataatat 253522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 662453 - 662336
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaac 108  Q
    |||||||||| | ||||| ||||| ||||||||| |||| ||| |||  ||||||||| |||||||||||| |||||||  |||||||| ||| ||||||    
T  662453 aatattaatattgcacaa-cacggtaaaataatacgtttgatgcaaaacatattaaaatattaaaattacagtatgaaaattatcgatt-tttattaaac 662356  T
Q  109 ttatgaagtaacaataatat 128  Q
     |||||||||| ||||||||    
T  662355 atatgaagtaataataatat 662336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 848251 - 848134
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaac 108  Q
    |||||||||| | ||||| ||||| ||||||||| |||| ||| |||  ||||||||| |||||||||||| |||||||  |||||||| ||| ||||||    
T  848251 aatattaatattgcacaa-cacggtaaaataatacgtttgatgcaaaacatattaaaatattaaaattacagtatgaaaattatcgatt-tttattaaac 848154  T
Q  109 ttatgaagtaacaataatat 128  Q
     |||||||||| ||||||||    
T  848153 atatgaagtaataataatat 848134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 27805202 - 27805294
Alignment:
Q  10 atattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattatttt 102  Q
    |||||| || ||||||||||||  ||||| |||||||| ||| ||| ||||||||||||| ||||||| ||||| |||  |||||||||||||    
T  27805202 atattagtattacacaaacacgataaaattataggtttgatgaaaaatatattaaaaaatcaaaattataatataaaaattatcgattatttt 27805294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 36368746 - 36368878
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatat-atcgattatttttt-aa 106  Q
    ||||||| || ||||||||||| | ||||||||| |||||||| ||| ||||| || |||| |||||||  ||   || ||| |||||||||||||| ||    
T  36368746 aatattattattacacaaacacagtaaaataataagtttaatgcaaaatatatcaagaaataaaaattagtatgaaaattattatcgattattttttgaa 36368845  T
Q  107 acttatgaagtaacaataatatagattaaatta 139  Q
    |  |||||||||| |||||||||||||||||||    
T  36368846 agatatgaagtaataataatatagattaaatta 36368878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 10903269 - 10903378
Alignment:
Q  34 aaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa--ta-tatcgattatttttt-aaacttatgaagtaacaataatata 129  Q
    ||||||||| |||||||||||| |||||||| |||| ||||||| | |||||||  || |||| |||||||||| |||  ||| |||||| |||||||||    
T  10903269 aaaataataagtttaatgtaaaatatattaagaaataaaaattatagtatgaaaattattatcaattattttttgaaagatataaagtaataataatata 10903368  T
Q  130 gattaaatta 139  Q
    ||||||||||    
T  10903369 gattaaatta 10903378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 42199924 - 42199990
Alignment:
Q  73 aattacaatatgaaatatatcgattattttttaaacttatgaagtaacaataatatagattaaattag 140  Q
    ||||||| |||||||  |||||||||| |||||||| |||||||||| |||| |||||||||||||||    
T  42199924 aattacagtatgaaaattatcgattatattttaaacatatgaagtaataata-tatagattaaattag 42199990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 10182997 - 10183089
Alignment:
Q  34 aaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaata-tatcgattattttttaaacttatgaagtaacaataa 125  Q
    |||||||||||||||||| ||| |||||||||| |   |||||||  ||||||| | |||| ||||||||| |||| ||| |||||| |||||    
T  10182997 aaaataataggtttaatgcaaaatatattaaaataaataaattacggtatgaaagattatcaattatttttgaaacatataaagtaataataa 10183089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 24615096 - 24614966
Alignment:
Q  11 tattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaat-taaaattacaatatgaaatatatcgattattttttaaact 109  Q
    |||||||| |||||||||| || |||||||||||||| ||| ||| |||||||||||   |||||||| | |||||||  |||||||||||||||||||     
T  24615096 tattaatattacacaaacatggtaaaataataggtttgatgcaaactatattaaaaaggataaaattatagtatgaaaattatcgattattttttaaaca 24614997  T
Q  110 tatgaagtaacaataatatagattaaattag 140  Q
    |||||||||| ||||||||||||||||||||    
T  24614996 tatgaagtaataataatatagattaaattag 24614966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 33719382 - 33719514
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaa--gtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaa 106  Q
    |||||||||| ||||||| ||||| |||||||||||||| | | |||   |||||||||||||||||||||||  ||||||  |||||||| ||||||||    
T  33719382 aatattaatattacacaagcacggtaaaataataggtttgaagcaaaatatatattaaaaaattaaaattacagcatgaaaattatcgattcttttttaa 33719481  T
Q  107 acttatgaagtaacaataatatagattaaatta 139  Q
    || ||||||||||  ||||||||||||||||||    
T  33719482 acatatgaagtaatgataatatagattaaatta 33719514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 38856102 - 38855971
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaa-aaaattaaaattacaatatgaaatatatcgattattttttaaa 107  Q
    |||||||||| ||| ||||||| | |||||||||||||| ||||||| |||||||| |||||||||||||||||||||||   ||| ||||||||| |||    
T  38856102 aatattaatattacgcaaacacagtaaaataataggtttcatgtaaaatatattaaaaaaattaaaattacaatatgaaaataatcaattatttttgaaa 38856003  T
Q  108 cttatgaagtaa-caataatatagattaaatt 138  Q
    | ||| ||||||  |||||| |||||||||||    
T  38856002 catataaagtaagaaataatgtagattaaatt 38855971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 31091851 - 31091979
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaac 108  Q
    |||||||||| |||| ||||| || |||||||||||||| ||| ||||||||| |||||||   ||||| | |||||||  || ||||| ||||||||||    
T  31091851 aatattaatattacataaacatggtaaaataataggtttgatgaaaagtatataaaaaaat---aattatagtatgaaaattagcgattcttttttaaac 31091947  T
Q  109 ttatgaagtaacaataatatagattaaattag 140  Q
     |||||||||| ||||||||| ||||||||||    
T  31091948 atatgaagtaataataatataaattaaattag 31091979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 35671884 - 35672012
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaac 108  Q
    |||||||||| || ||||||||   ||| |||||||||| ||| ||| ||||||||||||||||||||| | |||||||  |||| ||||||||||||||    
T  35671884 aatattaatattaaacaaacacattaaattaataggtttgatgcaaaatatattaaaaaattaaaattatagtatgaaaattatcaattattttttaaac 35671983  T
Q  109 ttatgaagtaacaataatatagattaaat 137  Q
     || | | ||| |||||||||||||||||    
T  35671984 atacggaataataataatatagattaaat 35672012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 790353 - 790487
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa--ta-tatcgattatttttt- 104  Q
    ||||||| || ||||||||||| | ||||||||| |||||||| ||| |||||||| |||| ||||||| | |||||||  || |||||||||||||||     
T  790353 aatattattattacacaaacacagtaaaataataagtttaatgcaaaatatattaagaaataaaaattatagtatgaaaattattatcgattattttttg 790452  T
Q  105 aaacttatgaagtaacaataatatagattaaatta 139  Q
    |||  |||||||||| |||||||||||||||||||    
T  790453 aaagatatgaagtaataataatatagattaaatta 790487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 51236182 - 51236048
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa--ta-tatcgattatttttt- 104  Q
    ||||||| || ||||||||||| | ||||||||| |||||||| ||| |||||||| |||| ||||||| | |||||||  || |||||||||||||||     
T  51236182 aatattattattacacaaacacagtaaaataataagtttaatgcaaaatatattaagaaataaaaattatagtatgaaaattattatcgattattttttg 51236083  T
Q  105 aaacttatgaagtaacaataatatagattaaatta 139  Q
    |||  |||||||||| |||||||||||||||||||    
T  51236082 aaagatatgaagtaataataatatagattaaatta 51236048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 50551261 - 50551159
Alignment:
Q  34 aaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaacttatgaagtaacaataatatagatt 133  Q
    |||||||||||||| ||  ||| ||||||||||||||||||||||| |||||||  |||| ||||||||| |||| ||| |||| | ||||||||| |||    
T  50551261 aaaataataggttttattcaaaatatattaaaaaattaaaattacattatgaaaattatctattatttttgaaacatatcaagtgataataatataaatt 50551162  T
Q  134 aaa 136  Q
    |||    
T  50551161 aaa 50551159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 22871509 - 22871641
Alignment:
Q  11 tattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa--ta-tatcgattatttttt-aa 106  Q
    ||||| || ||||||||||| | ||||||||| |||||||| ||| |||||||| |||| ||||||| | |||||||  || ||||||||||||||| ||    
T  22871509 tattattattacacaaacacagtaaaataataagtttaatgcaaaatatattaagaaataaaaattatagtatgaaaattattatcgattattttttgaa 22871608  T
Q  107 acttatgaagtaacaataatatagattaaatta 139  Q
    |  ||| |||||| |||||||||||||||||||    
T  22871609 agatattaagtaataataatatagattaaatta 22871641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 28655879 - 28655811
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaatta 77  Q
    |||||||||| ||||||||||||| ||||||||| |||| ||| ||| |||| ||||||||||||||||    
T  28655879 aatattaatattacacaaacacggtaaaataataagtttgatgcaaaatatagtaaaaaattaaaatta 28655811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 11619737 - 11619844
Alignment:
Q  34 aaaataataggtttaatgtaaagtatattaaaaaa-ttaaaattacaatatgaaatatatcgatta-ttttttaaacttatgaagtaacaataatataga 131  Q
    |||||||| | ||| ||| ||| |||||||||||| |||||| || | |||||||  ||| ||||| |||||||||| |||||||||| |||||||||||    
T  11619737 aaaataatggatttgatgcaaaatatattaaaaaaattaaaactagagtatgaaaattattgattaattttttaaacatatgaagtaataataatataga 11619836  T
Q  132 ttaaatta 139  Q
    ||||||||    
T  11619837 ttaaatta 11619844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 39193398 - 39193503
Alignment:
Q  20 tacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaacttatgaagtaa 119  Q
    |||| |||||||| |||||||||| ||| ||| ||| ||||||||||| ||||||||||| | |||||  |||| |||| ||||||||| ||| ||||||    
T  39193398 tacaaaaacacggtaaaataatagatttgatgcaaaatatattaaaaatttaaaattacagt-tgaaaattatcaatta-tttttaaacatatcaagtaa 39193495  T
Q  120 caataata 127  Q
     |||||||    
T  39193496 taataata 39193503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 34588759 - 34588677
Alignment:
Q  59 tattaaaaaattaaaattacaatatgaaatat-atcgattatttttt-aaacttatgaagtaacaataatatagattaaatta 139  Q
    |||||| |||| ||||||||| |||||||| | |||||||| ||||| |||  |||||||||| |||||||||||||||||||    
T  34588759 tattaagaaataaaaattacagtatgaaattttatcgattaatttttgaaagatatgaagtaataataatatagattaaatta 34588677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 17304925 - 17304845
Alignment:
Q  59 tattaaaaaattaaaattacaatatgaaatatatcgattatttttt-aaacttatgaagtaacaataatatagattaaatta 139  Q
    |||||| |||| ||||||||| || ||||| ||||||||| ||||| |||  |||||||||| |||||||||||||||||||    
T  17304925 tattaagaaataaaaattacagtaagaaat-tatcgattaatttttgaaagatatgaagtaataataatatagattaaatta 17304845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 8065604 - 8065654
Alignment:
Q  90 tatcgattatttttt-aaacttatgaagtaacaataatatagattaaatta 139  Q
    ||||||||||||||| |||  |||||||||| |||||||||||||||||||    
T  8065604 tatcgattattttttgaaagatatgaagtaataataatatagattaaatta 8065654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 4463966 - 4464094
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaac 108  Q
    ||||||||||  ||||||| |||| |||||||||||||| ||| ||| |||||  | |||   ||||||||||||||||  || ||||||||||||||||    
T  4463966 aatattaatatgacacaaatacggtaaaataataggtttgatgcaaaatatatatataaa---aaattacaatatgaaaattagcgattattttttaaac 4464062  T
Q  109 ttatgaagtaacaataatatagattaaattag 140  Q
    ||||||||||| ||||||||||||||||||||    
T  4464063 ttatgaagtaataataatatagattaaattag 4464094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 3900922 - 3901053
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaac 108  Q
    |||||||||| ||||||||||||| ||||||||| |||| ||| ||| ||||||||||| ||||||||| | |||| ||   |||||||| ||||||||     
T  3900922 aatattaatattacacaaacacggtaaaataataagtttgatgcaaaatatattaaaaagttaaaattatagtatgtaaatcatcgattactttttaaaa 3901021  T
Q  109 ttatgaagtaacaataatatagattaaattag 140  Q
     |||||| ||| ||||||||| ||||||||||    
T  3901022 atatgaaataataataatatatattaaattag 3901053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 10484199 - 10484282
Alignment:
Q  20 tacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttt 103  Q
    |||||||||| || |||||||||||||| |||| || ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  10484199 tacacaaacatggtaaaataataggtttgatgtcaaatatattaaaaaattaaaattacaatatgaaaaatatcaattattttt 10484282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 10386442 - 10386333
Alignment:
Q  27 acacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaacttatgaagtaacaataat 126  Q
    |||||| ||||||| |||||| ||| ||| |||||||||||||| |||||||| |||||||  ||||||||||||||||||| ||||| |||  ||| ||    
T  10386442 acacggtaaaataacaggtttgatgcaaaatatattaaaaaatttaaattacactatgaaaattatcgattattttttaaacatatgaggtagtaatcat 10386343  T
Q  127 atagattaaa 136  Q
    ||||||||||    
T  10386342 atagattaaa 10386333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 13531615 - 13531483
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaa-ttaaaattacaatatgaaatatatcgattattttttaaa 107  Q
    |||||||||| ||||||||||||| |||||||||||||| ||  ||| |||||||||||| |||||||||   |||||||  ||||||||| |||| |||    
T  13531615 aatattaatattacacaaacacgggaaaataataggtttgatccaaaatatattaaaaaatttaaaattattgtatgaaaattatcgattaattttgaaa 13531516  T
Q  108 cttatgaagtaacaataatatagattaaattag 140  Q
    | |||| ||| | |||| |||||||||||||||    
T  13531515 catatgtagtcataatattatagattaaattag 13531483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 33702829 - 33702963
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa--ta-tatcgattatttttt- 104  Q
    ||||||| || ||||||||||| | ||||||||| |||||||| ||| |||||||| |||| ||||||| | |||||||  || |||||||||||||||     
T  33702829 aatattattattacacaaacacagtaaaataataagtttaatgcaaaatatattaagaaataaaaattatagtatgaaaattattatcgattattttttg 33702928  T
Q  105 aaacttatgaagtaacaataatatagattaaatta 139  Q
    |||  |||||||||| |||||||||||||||||||    
T  33702929 aaagatatgaagtaataataatatagattaaatta 33702963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 1030785 - 1030654
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaa-ttaaaattacaatatgaaatatatcgattattttttaaa 107  Q
    |||||||||| |||||||||| || |||||||||||||| || |||| ||||||||||||  |||||||| | |||||||  ||| ||||||||||| ||    
T  1030785 aatattaatattacacaaacagggtaaaataataggtttgatataaaatatattaaaaaagataaaattatagtatgaaaattattgattatttttt-aa 1030687  T
Q  108 cttatgaagtaacaataatatagattaaattag 140  Q
    | |||||||||| ||||||||||||||||||||    
T  1030686 catatgaagtaataataatatagattaaattag 1030654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 13857319 - 13857449
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattatttttt-aaa 107  Q
    ||||||| || ||||||||||  | ||||||||| |||||||| ||| |||||||| |||| ||| ||||| |||||||| ||||||||| ||||| |||    
T  13857319 aatattattattacacaaacaaagtaaaataataagtttaatgcaaaatatattaagaaataaaatttacactatgaaat-tatcgattaatttttgaaa 13857417  T
Q  108 cttatgaagtaacaataatatagattaaatta 139  Q
      |||||||||| |||||||||||||||||||    
T  13857418 gatatgaagtaataataatatagattaaatta 13857449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 10222872 - 10222738
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa--tat-atcgattatttttt- 104  Q
    ||||||| || || |||||||| | ||||||||| |||||||| ||| |||||||| |||| ||||||| | |||||||  ||| ||||||||||||||     
T  10222872 aatattattattagacaaacacagtaaaataataagtttaatgcaaaatatattaagaaataaaaattatagtatgaaaattattatcgattattttttg 10222773  T
Q  105 aaacttatgaagtaacaataatatagattaaatta 139  Q
    |||  |||||||||| |||||||||||||||||||    
T  10222772 aaagatatgaagtaataataatatagattaaatta 10222738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 50309267 - 50309401
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaa--ta-tatcgattatttttt- 104  Q
    ||||||| || ||||||||||| | || |||||| |||||||| ||| ||||||||||||| |||||||   |||||||  || |||| ||||||||||     
T  50309267 aatattattattacacaaacacagtaagataataagtttaatgcaaaatatattaaaaaataaaaattatggtatgaaaattattatcaattattttttg 50309366  T
Q  105 aaacttatgaagtaacaataatatagattaaatta 139  Q
    |||  |||||||||| |||||||||||||||||||    
T  50309367 aaagatatgaagtaataataatatagattaaatta 50309401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 19997674 - 19997568
Alignment:
Q  34 aaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaacttatgaagtaacaataatatagatt 133  Q
    |||||||||| ||| ||| ||| |||||||||||||||||||||   ||| |||  |||||||||||||||||||  ||| | | | |||||||||||||    
T  19997674 aaaataatagatttgatgcaaaatatattaaaaaattaaaattattgtattaaaattatcgattattttttaaacacatgtaatcataataatatagatt 19997575  T
Q  134 aaattag 140  Q
    |||||||    
T  19997574 aaattag 19997568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 45701283 - 45701203
Alignment:
Q  57 tatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaacttatgaagtaacaataatatagattaaat 137  Q
    ||||||||||||||||  |||||| ||||||   ||||||||| |||||||| |||||||||  |||| ||||||||||||    
T  45701283 tatattaaaaaattaactttacaaaatgaaaataatcgattatattttaaacatatgaagtagtaatagtatagattaaat 45701203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 27167682 - 27167761
Alignment:
Q  57 tatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaacttatgaagtaacaataatatagattaaa 136  Q
    |||||| |||| || |||||||| |||||||  ||| ||||||||| ||||| |||||| ||| ||||||||||||||||    
T  27167682 tatatttaaaagtttaaattacagtatgaaaattattgattattttctaaacatatgaaataataataatatagattaaa 27167761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 15804 - 15677
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaag-tatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaa 107  Q
    |||||||||| |||| |||||  | |||||||||| ||| |||||||  |||||||||||||||||| |||  || ||    |||||||||||||| |||    
T  15804 aatattaatattacataaacaaagtaaaataatagatttgatgtaaaaatatattaaaaaattaaaactacggtaaga----tatcgattatttttaaaa 15709  T
Q  108 cttatgaagtaacaataatatagattaaatta 139  Q
    | |||||||||| |||||||||||||||||||    
T  15708 catatgaagtaataataatatagattaaatta 15677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 5784 - 5679
Alignment:
Q  34 aaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaacttatgaagtaacaataatatagatt 133  Q
    |||||||||||| | | | ||| ||||||| ||||||||||||||| | |||||  |||||||| ||||| ||||  ||||||||| |||||||||||||    
T  5784 aaaataataggtcttaagcaaaatatattataaaattaaaattacagtttgaaaattatcgattctttttgaaacgcatgaagtaataataatatagatt 5685  T
Q  134 aaatta 139  Q
    ||||||    
T  5684 aaatta 5679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 1068 - 1172
Alignment:
Q  9 aatattaataatacacaaacacggcaaaataataggtttaatgtaaagtatattaaaaaattaaaattacaatatgaaatatatcgattattttttaaac 108  Q
    |||||||||  |||||||| ||||  ||||||||||||| ||| ||| ||||||||||| |||||||||   |||||||  |||| ||||||||| ||||    
T  1068 aatattaattttacacaaatacggtgaaataataggtttgatgcaaaatatattaaaaagttaaaattattgtatgaaaattatcaattatttttgaaac 1167  T
Q  109 ttatg 113  Q
     ||||    
T  1168 atatg 1172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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