View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14259_high_6 (Length: 460)
Name: NF14259_high_6
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14259_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 9 - 444
Target Start/End: Complemental strand, 35970586 - 35970144
Alignment:
| Q |
9 |
agcatagggtaaacaccatatacacaattttttatctagatatatcctaatatatgcatacataattacataccataccaagcaagttgaagaagttgga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35970586 |
agcatagggtaaacaccatatacacaattttttatctagatatatcctcatatatgcatacataattacataccataccaagcaagttgaagaagttgga |
35970487 |
T |
|
| Q |
109 |
ttggtaatgtctagactaaagataaacatgcatgtggtttaaaatgagccatttgccaataatttctcttcaatttccaaactctattattgcatatgat |
208 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35970486 |
ttggtaatgtctagactaaagataagcatgcatgtggtttaaaatgagccatttgccaataatttctcttcaatttccaaactctattattgcatatgat |
35970387 |
T |
|
| Q |
209 |
tctg-----------aactatttatcccacagacgcaataaaaaatgtggagtgtcgtgtctataacgtcatgcacatttcatttggtagattcagtaac |
297 |
Q |
| |
|
|||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35970386 |
tctgtctgcattctgaattatttatcccacagacgcaataaaaa-tgtggagtgtcgtgtctataacgtcatgcacatttcatttggtagattcagtaac |
35970288 |
T |
|
| Q |
298 |
aacttaatgtttgtttacgtaataataatagagcctcactggttgaccagtttccttgtgtaaaattgtgatttaattgaaccaattgaaaacaagtaaa |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35970287 |
aacttaatgtttgtttacgtaataataatagagcctcactggttgaccagattccttgtgtaaaattgtggtttaattgaaccaattgaaaacaagtaaa |
35970188 |
T |
|
| Q |
398 |
agattggtgacgtacaagtttgcactgaagataaggtttcgagtttg |
444 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
35970187 |
agattggtgacgt---agtttgcactgaagataaggtttggagtttg |
35970144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University