View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14259_low_10 (Length: 442)
Name: NF14259_low_10
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14259_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 4 - 425
Target Start/End: Original strand, 43804665 - 43805088
Alignment:
| Q |
4 |
aaaaactaaaaacaaagcatcatgataaataattcaacaagcannnnnnncaaggacgaaaggcagtttt-taaagttgtaatgaaatacacccttagac |
102 |
Q |
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| T |
43804665 |
aaaaactaaaaacaaagcatcataataaataattcaacaagcatttttttcaaggacgaaaggcagttttttaaagttgtaatgaaatacacccttagac |
43804764 |
T |
|
| Q |
103 |
ttagagtagtaatttacagttgtttcaggctaaacttctgtatcgatatacaaattaaggtagccacatcatgtcaaaatagttagaaacataatgcata |
202 |
Q |
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| T |
43804765 |
ttagagtagtaatttacagttgtttcaggctaaacttctgtatcgatatacaaattaaggtagccacatcatgtcaaaatagttagaaacataatgcata |
43804864 |
T |
|
| Q |
203 |
aacaaaatataacataaagtcatgcgaagttctgttttcaagcccttacatatcattcacgtggcagctgaagacgattgcatctgcacccaatctcata |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43804865 |
aacaaaatataacataaagtcatgcgaagttctgttttcaagcccttacatatcattcacgtggcagctgaagacaattgcatctgcacccaatctcata |
43804964 |
T |
|
| Q |
303 |
ctaccagtcttaaaaccgtttccatctgcacggccaaattgaaaaataaaatatacaag-aaataccaaatacttagaataaagaatgccatagtccata |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43804965 |
ctaccagtcttaaaaccgtttccatctgcacggccaaattgaaaaataaaatatacaagaaaataccaaatacttagaataaagaatgccatagtccata |
43805064 |
T |
|
| Q |
402 |
cactgtccaattgcaaattctgag |
425 |
Q |
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| T |
43805065 |
cactgtccaattgcaaattctgag |
43805088 |
T |
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