View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14259_low_14 (Length: 400)

Name: NF14259_low_14
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14259_low_14
NF14259_low_14
[»] chr2 (16 HSPs)
chr2 (173-295)||(39698111-39698229)
chr2 (18-171)||(39697863-39698019)
chr2 (1-82)||(3464206-3464287)
chr2 (1-82)||(10658034-10658115)
chr2 (1-82)||(6224092-6224173)
chr2 (1-82)||(28845189-28845270)
chr2 (1-82)||(43825443-43825524)
chr2 (1-82)||(7027507-7027588)
chr2 (1-82)||(18177875-18177956)
chr2 (1-82)||(26789388-26789469)
chr2 (1-82)||(28739810-28739891)
chr2 (1-78)||(379538-379615)
chr2 (1-82)||(3575446-3575527)
chr2 (1-82)||(43079092-43079173)
chr2 (5-82)||(25288768-25288845)
chr2 (3-39)||(33136240-33136276)
[»] chr8 (17 HSPs)
chr8 (1-82)||(10294865-10294946)
chr8 (1-82)||(7466925-7467006)
chr8 (1-82)||(18305487-18305568)
chr8 (1-82)||(39467032-39467113)
chr8 (1-82)||(14781648-14781729)
chr8 (1-78)||(18958244-18958321)
chr8 (1-82)||(26856708-26856789)
chr8 (1-82)||(31625912-31625993)
chr8 (1-82)||(43166193-43166274)
chr8 (1-82)||(43308023-43308104)
chr8 (1-82)||(44725307-44725388)
chr8 (1-82)||(9288009-9288090)
chr8 (1-78)||(19717391-19717468)
chr8 (1-78)||(42305117-42305194)
chr8 (1-82)||(37857490-37857571)
chr8 (1-46)||(16364334-16364379)
chr8 (1-82)||(32498148-32498222)
[»] chr7 (25 HSPs)
chr7 (1-82)||(7993759-7993840)
chr7 (1-82)||(21067982-21068063)
chr7 (1-82)||(48136749-48136830)
chr7 (1-82)||(8675934-8676015)
chr7 (1-82)||(12740975-12741056)
chr7 (1-82)||(28342913-28342994)
chr7 (1-82)||(44256286-44256367)
chr7 (1-82)||(47067312-47067393)
chr7 (1-80)||(29586118-29586197)
chr7 (1-82)||(510249-510330)
chr7 (1-82)||(3023537-3023618)
chr7 (1-82)||(23101894-23101975)
chr7 (1-82)||(33891757-33891838)
chr7 (1-82)||(39784709-39784790)
chr7 (1-82)||(40460234-40460315)
chr7 (1-82)||(29614316-29614397)
chr7 (1-82)||(32884364-32884445)
chr7 (1-82)||(33383243-33383324)
chr7 (1-82)||(37328511-37328592)
chr7 (1-82)||(44121451-44121532)
chr7 (3-82)||(29893575-29893653)
chr7 (1-82)||(30823242-30823322)
chr7 (1-61)||(37971899-37971959)
chr7 (1-63)||(39028709-39028770)
chr7 (28-78)||(41827933-41827983)
[»] chr5 (10 HSPs)
chr5 (1-82)||(4239981-4240062)
chr5 (1-82)||(37014458-37014539)
chr5 (1-82)||(13926535-13926616)
chr5 (1-82)||(1151809-1151890)
chr5 (1-82)||(4549776-4549857)
chr5 (1-82)||(13999611-13999692)
chr5 (5-82)||(39852974-39853051)
chr5 (1-78)||(40013219-40013296)
chr5 (11-82)||(5949716-5949787)
chr5 (1-61)||(1459696-1459756)
[»] chr4 (20 HSPs)
chr4 (1-82)||(29649521-29649602)
chr4 (1-82)||(32683545-32683626)
chr4 (1-82)||(51321459-51321540)
chr4 (1-82)||(5800569-5800650)
chr4 (1-82)||(27768668-27768749)
chr4 (1-82)||(41725709-41725790)
chr4 (1-82)||(49501048-49501129)
chr4 (1-82)||(49507113-49507194)
chr4 (1-82)||(49834348-49834429)
chr4 (3-82)||(54341750-54341829)
chr4 (1-82)||(5442006-5442087)
chr4 (1-82)||(23987800-23987881)
chr4 (1-82)||(32322673-32322754)
chr4 (1-82)||(37827946-37828027)
chr4 (1-82)||(37916394-37916475)
chr4 (1-82)||(48261683-48261764)
chr4 (1-78)||(50018799-50018876)
chr4 (1-82)||(54852992-54853073)
chr4 (1-82)||(28484504-28484585)
chr4 (1-58)||(30966554-30966611)
[»] chr3 (23 HSPs)
chr3 (1-82)||(31645774-31645855)
chr3 (1-82)||(39038683-39038764)
chr3 (1-82)||(39841964-39842045)
chr3 (1-82)||(51737206-51737287)
chr3 (1-82)||(52617497-52617578)
chr3 (1-82)||(54629455-54629536)
chr3 (1-82)||(34483615-34483696)
chr3 (1-82)||(50761616-50761697)
chr3 (3-82)||(52810962-52811041)
chr3 (1-82)||(10660790-10660871)
chr3 (1-82)||(18750236-18750317)
chr3 (1-78)||(20833504-20833581)
chr3 (1-82)||(40897733-40897814)
chr3 (1-82)||(17946817-17946898)
chr3 (1-82)||(23752904-23752985)
chr3 (1-82)||(36673670-36673751)
chr3 (1-82)||(37455450-37455531)
chr3 (1-82)||(44905371-44905452)
chr3 (1-82)||(45254946-45255027)
chr3 (1-82)||(48379753-48379834)
chr3 (1-82)||(50902830-50902910)
chr3 (1-51)||(26107937-26107987)
chr3 (104-148)||(39842072-39842116)
[»] chr6 (7 HSPs)
chr6 (2-82)||(14261962-14262042)
chr6 (1-82)||(4199978-4200059)
chr6 (1-82)||(30384581-30384662)
chr6 (1-82)||(31068026-31068107)
chr6 (1-82)||(34773988-34774069)
chr6 (1-82)||(31896240-31896321)
chr6 (1-82)||(7497693-7497774)
[»] chr1 (18 HSPs)
chr1 (3-82)||(29395950-29396029)
chr1 (1-82)||(25612695-25612776)
chr1 (1-82)||(46328589-46328670)
chr1 (1-82)||(6313179-6313260)
chr1 (1-82)||(9322030-9322111)
chr1 (5-82)||(15834552-15834629)
chr1 (1-82)||(28386969-28387050)
chr1 (1-82)||(29219724-29219805)
chr1 (1-82)||(45273171-45273252)
chr1 (1-82)||(51702198-51702279)
chr1 (1-82)||(48176956-48177037)
chr1 (1-78)||(18799059-18799136)
chr1 (1-78)||(25830761-25830838)
chr1 (1-61)||(8140373-8140433)
chr1 (5-82)||(5494615-5494692)
chr1 (1-82)||(38535659-38535740)
chr1 (1-82)||(38557877-38557958)
chr1 (1-37)||(49231632-49231668)
[»] scaffold0347 (1 HSPs)
scaffold0347 (1-82)||(15269-15350)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-82)||(39153-39234)
[»] scaffold1504 (1 HSPs)
scaffold1504 (1-82)||(1483-1564)
[»] scaffold0543 (1 HSPs)
scaffold0543 (5-82)||(11128-11205)
[»] scaffold0042 (1 HSPs)
scaffold0042 (1-82)||(57580-57661)
[»] scaffold0940 (1 HSPs)
scaffold0940 (1-63)||(3984-4046)
[»] scaffold0383 (1 HSPs)
scaffold0383 (1-59)||(16549-16607)
[»] scaffold0152 (2 HSPs)
scaffold0152 (1-59)||(20785-20843)
scaffold0152 (1-59)||(28958-29016)


Alignment Details
Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 173 - 295
Target Start/End: Original strand, 39698111 - 39698229
Alignment:
Q  173 gtactcttggagcacaagagagtactacgtcacataaacagcaccatcgatgataagtgaaattagtggattgaacttttttacttgtgagattgttatt 272  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| |||||||| | |||||||    
T  39698111 gtactcttggagcacaagagagtactacgtcacataa-cagcaccatcaatgataagtgaaattagtggattgaattttttaacttgtgaaactgttatt 39698209  T
Q  273 aattagaagcaatgtttcatgac 295  Q
    |   |||||||||||||||||||    
T  39698210 a---agaagcaatgtttcatgac 39698229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 39697863 - 39698019
Alignment:
Q  18 aaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatctttnnnnnnn---taattatttcagctctcattttgtg 114  Q
    |||||| |||| |||||||||| |||| |||||| ||||||||||| || |||||| ||||||||          ||||||||||||| |||||||| ||    
T  39697863 aaaatgttatttccacaaaatttaattctacatatttaaaattatgtcaacccttataaatctttcaaaaaaaaataattatttcagccctcattttatg 39697962  T
Q  115 tttgaaattagagaattcatttgagttttcctaaatatttgtgtgttgagaattttc 171  Q
    ||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||    
T  39697963 tttgaaattggagaagtcatttgagttttcctaaatgtttgtgtgttgagaattttc 39698019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 3464287 - 3464206
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  3464287 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 3464206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 10658115 - 10658034
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  10658115 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 10658034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 6224092 - 6224173
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||    
T  6224092 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttataaatcttt 6224173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 28845270 - 28845189
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||| ||| |||||||||||||    
T  28845270 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgctagcacttacaaatcttt 28845189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 43825524 - 43825443
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  43825524 acattttttatttgttaaaaatgttattaccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 43825443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 7027588 - 7027507
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||| ||||||| |||||| |||||||||||||||| |||||||||||||    
T  7027588 acattttttatttgttaaaaatgttattcccataaatttcaattgtacatatttaaaattatgccagcacttacaaatcttt 7027507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 18177956 - 18177875
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    |||||||| |||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  18177956 acatttttaatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 18177875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 26789469 - 26789388
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||||| | |||||||||||||    
T  26789469 acattttttatttgttaaaaatgttattcccataaaattcaattgtacatatttaaaattatgccaccacttacaaatcttt 26789388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 28739810 - 28739891
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||||||||||| | |||||||||||||    
T  28739810 acattttttatttgttaaaaatgttaatcccacaaaattcaattgtacatatttaaaattatgccatcacttacaaatcttt 28739891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 379615 - 379538
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaat 78  Q
    ||||||||||||||||||||||| ||||||||||||| |||||| |||||| |||| ||||||||||| |||||||||    
T  379615 acattttttatttgttaaaaatgttattcccacaaaactcaattgtacatatttaagattatgccagcacttacaaat 379538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 3575527 - 3575446
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||| | ||| |||||||||    
T  3575527 acattttttatttgttaaaaatgttatttccacaaaattcaattgtacatatttaaaattatgccaacacttccaaatcttt 3575446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 43079173 - 43079092
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| |||||| ||||||||||  |||| |||||||||||||    
T  43079173 acattttttatttgttaaaaatgttatttccacaaaattcaattgtacatatttaaaattatatcagcacttacaaatcttt 43079092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 25288845 - 25288768
Alignment:
Q  5 tttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||| ||| ||||||||| ||||||| |||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  25288845 ttttttttttttaaaaatgttattcccgcaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 25288768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 33136276 - 33136240
Alignment:
Q  3 attttttatttgttaaaaatgctattcccacaaaatt 39  Q
    ||||||||||||||||||||| |||||||||||||||    
T  33136276 attttttatttgttaaaaatgttattcccacaaaatt 33136240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 10294865 - 10294946
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  10294865 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 10294946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 7467006 - 7466925
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||| ||| |||||||||||||    
T  7467006 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgctagcacttacaaatcttt 7466925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 18305487 - 18305568
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  18305487 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 18305568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 39467032 - 39467113
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  39467032 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 39467113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 14781648 - 14781729
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||| ||||| |||||||||||||    
T  14781648 acattttttatttgttaaaaatgttattcccataaaattcaattgtacatatttaaaattattccagcacttacaaatcttt 14781729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 18958244 - 18958321
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaat 78  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||  |||||||||    
T  18958244 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagtacttacaaat 18958321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 26856789 - 26856708
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||| ||||| |||||| ||||||||||| |||| |||||||||||||    
T  26856789 acattttttatttgttaaaaatgttattcccacaaaatccaattgtacatatttaaaattatgtcagcacttacaaatcttt 26856708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 31625993 - 31625912
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    |||||||||||||| |||||||| |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  31625993 acattttttatttgataaaaatgttattcccacaaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 31625912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 43166193 - 43166274
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  43166193 acattttttatttgttaaaaatgttattcccacagaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 43166274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 43308023 - 43308104
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| ||||||||||||||| |||| |||||| |||||||||||||||  |||||||||||||    
T  43308023 acattttttatttgttaaaaatgttattcccacaaaatttaattgtacatatttaaaattatgccagtacttacaaatcttt 43308104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 44725307 - 44725388
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||| ||| |||||||||||||    
T  44725307 acattttttatttgttaaaaatgttattcccataaaattcaattgtacatatttaaaattatgctagcacttacaaatcttt 44725388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 9288009 - 9288090
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||  |||||||||||||| | ||| |||||||||    
T  9288009 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatgtttaaaattatgccaacacttgcaaatcttt 9288090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 19717391 - 19717468
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaat 78  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| |||||| |||||||||||||||  |||||||||    
T  19717391 acattttttatttattaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagtacttacaaat 19717468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 42305117 - 42305194
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaat 78  Q
    ||||||||||||||||||||||| |||||||||||||||||||| | |||| |||||||||||||||  |||||||||    
T  42305117 acattttttatttgttaaaaatgttattcccacaaaattcaattgttcatatttaaaattatgccagtacttacaaat 42305194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 37857571 - 37857490
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||| ||| || |||||||||||||| | |||||||||||||    
T  37857571 acattttttatttgttaaaaatgttattctcacataattcaattgtacgtatttaaaattatgccaacacttacaaatcttt 37857490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16364379 - 16364334
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaatttt 46  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  16364379 acattttttatttgttaaaaatgttattcccacaaaattcaatttt 16364334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 32498222 - 32498148
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||       || |||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  32498222 acattttttatttgttaaaaat-------ccgcaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 32498148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 7993840 - 7993759
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  7993840 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 7993759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 21068063 - 21067982
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  21068063 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 21067982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 48136749 - 48136830
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  48136749 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 48136830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 8676015 - 8675934
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  8676015 acattttttatttgttaaaaatgttatttccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 8675934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 12741056 - 12740975
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  12741056 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 12740975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 28342994 - 28342913
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  28342994 acattttttatttgttaaaaatgttattcccataaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 28342913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 44256286 - 44256367
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  44256286 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 44256367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 47067393 - 47067312
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  47067393 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 47067312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 29586197 - 29586118
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatct 80  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || ||| |||||||||||||||| |||||||||||    
T  29586197 acattttttatttgttaaaaatgttattcccacaaaattcaattgtagatatttaaaattatgccagcacttacaaatct 29586118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 510330 - 510249
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  510330 acattttttatttgttaaaaatgttattcccataaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 510249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 3023618 - 3023537
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||| ||| |||||| ||||||    
T  3023618 acattttttatttgttaaaaatgttattcccacaaaattcaattatacatatttaaaattatgctagcacttacagatcttt 3023537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 23101975 - 23101894
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  23101975 acattttttatttgttaaaaatgttatttccataaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 23101894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 33891757 - 33891838
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    |||||||||||||||| |||||| |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  33891757 acattttttatttgtttaaaatgttattcccacaaaattcaattgtacatatttaaaattatgtcagcgcttacaaatcttt 33891838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 39784790 - 39784709
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||| || |||||||||||| ||| |||||||||||||    
T  39784790 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacttatttaaaattatgcaagcacttacaaatcttt 39784709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 40460234 - 40460315
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||  |||||||||||||||| ||| |||||||||    
T  40460234 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatgtttaaaattatgccagcacttgcaaatcttt 40460315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 29614316 - 29614397
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||  ||| |||||||||||||    
T  29614316 acattttttatttgttaaaaatgttattcccataaaattcaattgtacatatttaaaattatgttagcacttacaaatcttt 29614397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 32884445 - 32884364
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||||| ||||| ||| |||||||||||||    
T  32884445 acattttttatttgttaaaaatgttattcccaaaaaattcaattgtacatatttaaaactatgcgagcacttacaaatcttt 32884364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 33383324 - 33383243
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    |||||||||||||||| |||||| |||||||||||||||||||| |||||| |||||||||||  ||| |||||||||||||    
T  33383324 acattttttatttgttgaaaatgttattcccacaaaattcaattgtacatatttaaaattatgttagcacttacaaatcttt 33383243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 37328592 - 37328511
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||| ||||||||| |||| ||||||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  37328592 acattttttattttttaaaaatgttattgccacaaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 37328511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 44121451 - 44121532
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||||| | ||||||||| |||| |||||||||||||    
T  44121451 acattttttatttgttaaaaatattattcccacaaaattcaattgtacatattaaaaattatgtcagcacttacaaatcttt 44121532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 29893653 - 29893575
Alignment:
Q  3 attttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||| |||||| ||||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  29893653 attttttatttgttaaaaatgttattcc-acaaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 29893575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 30823322 - 30823242
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| ||| ||| |||||||||||| | |||| ||||||||||| |||| |||||||||||||    
T  30823322 acattttttatttgttaaaaatgttat-cccgcaaaattcaattgtgcatatttaaaattatgtcagcacttacaaatcttt 30823242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 37971899 - 37971959
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaatta 61  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || ||| |||||||||    
T  37971899 acattttttatttgttaaaaatgttattcccacaaaattcaattgtatatatttaaaatta 37971959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 39028770 - 39028709
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatg 63  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| |||||| |||||||||||    
T  39028770 acattttttatatgttaaaaatgttattcccacaaaattcaattgtacata-ttaaaattatg 39028709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 41827983 - 41827933
Alignment:
Q  28 tcccacaaaattcaattttacatacttaaaattatgccagcccttacaaat 78  Q
    ||||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  41827983 tcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaat 41827933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 4239981 - 4240062
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  4239981 acattttttatttgttaaaaatgttattcccacaaaattcaattatacatatttaaaattatgccagcacttacaaatcttt 4240062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 37014539 - 37014458
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  37014539 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 37014458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 13926616 - 13926535
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||| | |||||||||||||    
T  13926616 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccaacacttacaaatcttt 13926535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 1151809 - 1151890
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| ||||||  ||||||||||||||| |||||||||||||    
T  1151809 acattttttatttgttaaaaatgttattcccataaaattcaattgtacatatataaaattatgccagcacttacaaatcttt 1151890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 4549776 - 4549857
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  4549776 acattttttatttgttaaaaatattattcccacaaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 4549857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 13999611 - 13999692
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| |||||| |||| |||||| |||||||||||||||| |||||||||||||    
T  13999611 acattttttatttgttaaaaatgttattcccataaaattaaattgtacatatttaaaattatgccagcacttacaaatcttt 13999692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 39853051 - 39852974
Alignment:
Q  5 tttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  39853051 tttttatttgttaaaaatgttattgccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 39852974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 40013219 - 40013296
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaat 78  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||  |||||||||    
T  40013219 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagtacttacaaat 40013296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 5949787 - 5949716
Alignment:
Q  11 tttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||| |||||||||||||||||||| |||||| ||||| |||||||||| |||||||||||||    
T  5949787 tttgttaaaaatgttattcccacaaaattcaattgtacatatttaaatttatgccagcacttacaaatcttt 5949716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 1459696 - 1459756
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaatta 61  Q
    ||||||||||||||||||||||| |||| |||||||| |||| | |||||| |||||||||    
T  1459696 acattttttatttgttaaaaatgttatttccacaaaactcaaatgtacatatttaaaatta 1459756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 29649521 - 29649602
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  29649521 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 29649602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 32683545 - 32683626
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  32683545 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 32683626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 51321540 - 51321459
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  51321540 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 51321459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 5800650 - 5800569
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  5800650 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 5800569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27768749 - 27768668
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  27768749 acattttttatttgttaaaaatgttattcccataaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 27768668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 41725790 - 41725709
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    |||||| |||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  41725790 acatttgttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 41725709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 49501048 - 49501129
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||  |||||||||||||    
T  49501048 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagaacttacaaatcttt 49501129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 49507113 - 49507194
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||  |||||||||||||    
T  49507113 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagaacttacaaatcttt 49507194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 49834348 - 49834429
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  49834348 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 49834429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 54341829 - 54341750
Alignment:
Q  3 attttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  54341829 attttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 54341750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 5442087 - 5442006
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||| ||||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  5442087 acattttttctttgttaaaaatgttattcccataaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 5442006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 23987881 - 23987800
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| | ||||||||| |||| |||||||||||||    
T  23987881 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatattcaaaattatgtcagcacttacaaatcttt 23987800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 32322754 - 32322673
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||||| |||| |||||||||||||    
T  32322754 acattttttatttgttaaaaatgttattcccacaaaactcaattgtacatatttaaaattatgtcagcacttacaaatcttt 32322673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 37827946 - 37828027
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||| ||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  37827946 acattttatatttgttaaaaatgttattcccataaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 37828027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 37916475 - 37916394
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| ||||||||||||||||||||  ||||| ||||||||||| |||| |||||||||||||    
T  37916475 acattttttatttgttaaaaatgttattcccacaaaattcaattgcacatatttaaaattatgtcagcacttacaaatcttt 37916394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 48261764 - 48261683
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||||||||||  |||||| |||||||||||||| | |||||||||||||    
T  48261764 acattttttatttgttaaaaatgttattcccataaaattcaatcgtacatatttaaaattatgccaacacttacaaatcttt 48261683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 50018876 - 50018799
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaat 78  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||| ||  |||||||||    
T  50018876 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgctagtacttacaaat 50018799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 54852992 - 54853073
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| |||| | |||||||||||||||| |||| ||||||||    
T  54852992 acattttttatttattaaaaatgttattcccacaaaattcaattgtacaaatttaaaattatgccagcacttataaatcttt 54853073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 28484585 - 28484504
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    |||||||||||| |||||||||| ||||||||||||||||| || |||||| ||||||||||| |||| | |||||||||||    
T  28484585 acattttttattcgttaaaaatgttattcccacaaaattcagttgtacatatttaaaattatgtcagcacctacaaatcttt 28484504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 30966554 - 30966611
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaa 58  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||    
T  30966554 acattttttatttgttaaaaatgttattcccacaaaattcaattatacatatttaaaa 30966611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31645774 - 31645855
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  31645774 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 31645855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 39038764 - 39038683
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  39038764 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 39038683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 39841964 - 39842045
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||    
T  39841964 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgtcagcccttacaaatcttt 39842045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 51737206 - 51737287
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  51737206 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 51737287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 52617497 - 52617578
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  52617497 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 52617578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 54629536 - 54629455
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  54629536 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 54629455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 34483615 - 34483696
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  34483615 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 34483696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 50761616 - 50761697
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||| ||| |||||| |||||||||||||||| |||||||||||||    
T  50761616 acattttttatttgttaaaaatgttattcccacaaaattctattgtacatatttaaaattatgccagcacttacaaatcttt 50761697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 52811041 - 52810962
Alignment:
Q  3 attttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| || |||||||||||||    
T  52811041 attttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccggcacttacaaatcttt 52810962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 10660871 - 10660790
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||| ||||||| |||||    
T  10660871 acattttttatttgttaaaaatgttattcccataaaattcaattgtacatatttaaaattatgccagcacttacaactcttt 10660790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 18750317 - 18750236
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||| |||||| |||| ||||||||    
T  18750317 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattacgccagcacttagaaatcttt 18750236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 20833581 - 20833504
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaat 78  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||  |||||||||    
T  20833581 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagtacttacaaat 20833504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 40897814 - 40897733
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||| ||||||||| |||| ||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  40897814 acattttttattttttaaaaatgttatttccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 40897733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 17946898 - 17946817
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    |||||||||||||||||||||||  ||| ||||||||||||||| |||||| |||||||||||||| | |||||||||||||    
T  17946898 acattttttatttgttaaaaatgtcatttccacaaaattcaattgtacatatttaaaattatgccatcacttacaaatcttt 17946817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 23752904 - 23752985
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    |||||||||||||||||||||||  ||| ||||||||||||||| |||||| ||||||||| |||||| |||||||||||||    
T  23752904 acattttttatttgttaaaaatgtaattgccacaaaattcaattgtacatatttaaaattaagccagcacttacaaatcttt 23752985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 36673670 - 36673751
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| || ||| |||||||||||||| | |||||||||||||    
T  36673670 acattttttatttgttaaaaatgttattcccataaaattcaattgtaaatatttaaaattatgccaccacttacaaatcttt 36673751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 37455531 - 37455450
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| |||||| ||||||||||| |||| |||| ||||||||    
T  37455531 acattttttatttgttaaaaatgttatttccacaaaattcaattgtacatatttaaaattatgtcagcacttataaatcttt 37455450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 44905371 - 44905452
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||  |||||| |||||| |||||| |||||||||||||||| |||||||||||||    
T  44905371 acattttttatttgttaaaaatgttattcttacaaaactcaattgtacatatttaaaattatgccagcacttacaaatcttt 44905452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 45254946 - 45255027
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| |||||| ||||  |||||||||| |||||||||||||    
T  45254946 acattttttatttattaaaaatgttattcccacaaaattcaattgtacatatttaagcttatgccagcacttacaaatcttt 45255027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 48379834 - 48379753
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| ||||||||||||| |||||| |||||| ||||||||| | |||| |||||||||||||    
T  48379834 acattttttatttgttaaaaatgttattcccacaaaactcaattgtacatatttaaaattacgtcagcacttacaaatcttt 48379753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 50902830 - 50902910
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| | |||| ||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  50902830 acattttttatttgttaaaaatgtt-ttccaacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 50902910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26107987 - 26107937
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacata 51  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  26107987 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacata 26107937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 39842072 - 39842116
Alignment:
Q  104 ctcattttgtgtttgaaattagagaattcatttgagttttcctaa 148  Q
    ||||||||||||||||||||||| || ||||||||||||| ||||    
T  39842072 ctcattttgtgtttgaaattagaaaagtcatttgagtttttctaa 39842116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 14261962 - 14262042
Alignment:
Q  2 cattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  14261962 cattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 14262042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 4199978 - 4200059
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  4199978 acattttttatttgttaaaaatgttattcccataaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 4200059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 30384581 - 30384662
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||| ||| |||||||||||||    
T  30384581 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgctagcacttacaaatcttt 30384662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 31068107 - 31068026
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  31068107 acattttttatttgttaaaaatgttattcccataaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 31068026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 34774069 - 34773988
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||| ||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  34774069 acattttttatctgttaaaaatgttattcccataaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 34773988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 31896321 - 31896240
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||||||||| | |||||| ||||||||||| |||| |||||||||||||    
T  31896321 acattttttatttgttaaaaatgttattcccataaaattcaactgtacatatttaaaattatgtcagcacttacaaatcttt 31896240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 7497774 - 7497693
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    |||||||||| |||||||||||| |||||||| ||||||||||| |||||| ||||||||||| | |  |||||||||||||    
T  7497774 acattttttaattgttaaaaatgttattcccaaaaaattcaattgtacatatttaaaattatgtcggtacttacaaatcttt 7497693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 29395950 - 29396029
Alignment:
Q  3 attttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  29395950 attttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 29396029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 25612776 - 25612695
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  25612776 acattttttatttgttaaaaatgttattcccataaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 25612695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 46328670 - 46328589
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  46328670 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 46328589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 6313260 - 6313179
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||  |||||||| ||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  6313260 acattttttatttgttaaaaatattattcccataaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 6313179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 9322030 - 9322111
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  9322030 acattttttatttgttaaaaatgttattcccataaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 9322111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 15834552 - 15834629
Alignment:
Q  5 tttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  15834552 tttttatttgttaaaaatgttattgccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 15834629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 28386969 - 28387050
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    |||||||||||||||||||| |  |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  28386969 acattttttatttgttaaaacttttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 28387050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 29219805 - 29219724
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||| | |||| ||||||||    
T  29219805 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccaacacttataaatcttt 29219724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 45273252 - 45273171
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  45273252 acattttttatttgttaaaaatgttatttccacaaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 45273171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 51702279 - 51702198
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||  |||| |||||||||||||    
T  51702279 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatttcagcacttacaaatcttt 51702198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 48176956 - 48177037
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| |||||| |||||||||||  ||| |||||||||||||    
T  48176956 acattttttatatgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgttagcacttacaaatcttt 48177037  T

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Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 18799136 - 18799059
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaat 78  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||| | |||  |||||||||    
T  18799136 acattttttatttgttaaaaatgttattcccacaaaattcaattctacatatttaaaattacgtcagtacttacaaat 18799059  T

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Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 25830761 - 25830838
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaat 78  Q
    ||||||||||| ||||| ||||| |||||||||||||||||||| |||||| |||||||||||||| | |||||||||    
T  25830761 acattttttatatgttacaaatgttattcccacaaaattcaattgtacatatttaaaattatgccaacacttacaaat 25830838  T

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Target: chr1; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 8140373 - 8140433
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaatta 61  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||    
T  8140373 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaatta 8140433  T

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Target: chr1; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 5494615 - 5494692
Alignment:
Q  5 tttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||| ||||||||||| ||||| |||||||||||||| |||||| |||||||||||||  | |||||||||||||    
T  5494615 tttttatctgttaaaaatgttattctcacaaaattcaattgtacatatttaaaattatgccgacacttacaaatcttt 5494692  T

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Target: chr1; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 38535659 - 38535740
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||  ||||  ||||||| |||||| |||||| |||||||||||||| | |||||||||||||    
T  38535659 acattttttatttgttaaaaattttatttacacaaaactcaattgtacatatttaaaattatgccaacacttacaaatcttt 38535740  T

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Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 38557877 - 38557958
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||  ||||  ||||||| |||||| |||||| |||||||||||||| | |||||||||||||    
T  38557877 acattttttatttgttaaaaattttatttacacaaaactcaattgtacatatttaaaattatgccaacacttacaaatcttt 38557958  T

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Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 49231668 - 49231632
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaa 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  49231668 acattttttatttgttaaaaatgttattcccacaaaa 49231632  T

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Target: scaffold0347 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 15350 - 15269
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  15350 acattttttatatgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 15269  T

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Target: scaffold0110 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 39153 - 39234
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    |||| |||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  39153 acatattttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 39234  T

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Target: scaffold1504 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold1504
Description:

Target: scaffold1504; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 1564 - 1483
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||| ||||||||||| |||||||||||||    
T  1564 acattttttatttgttaaaaatgttattcccaaaaaattcaattgtacatatttaatattatgccagcacttacaaatcttt 1483  T

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Target: scaffold0543 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 11205 - 11128
Alignment:
Q  5 tttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  11205 tttttatttgttaaaaatgttattgccacaaaattcaattgtacatatttaaaattatgccagcacttacaaatcttt 11128  T

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Target: scaffold0042 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 57580 - 57661
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatgccagcccttacaaatcttt 82  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||    
T  57580 acattatttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatgtcagcacttacaaatcttt 57661  T

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Target: scaffold0940 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0940
Description:

Target: scaffold0940; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 3984 - 4046
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaattatg 63  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||    
T  3984 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaattatg 4046  T

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Target: scaffold0383 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 16549 - 16607
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaat 59  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||    
T  16549 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaat 16607  T

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Target: scaffold0152 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 20785 - 20843
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaat 59  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||    
T  20785 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaat 20843  T

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Target: scaffold0152; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29016 - 28958
Alignment:
Q  1 acattttttatttgttaaaaatgctattcccacaaaattcaattttacatacttaaaat 59  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||    
T  29016 acattttttatttgttaaaaatgttattcccacaaaattcaattgtacatatttaaaat 28958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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