View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14259_low_16 (Length: 371)

Name: NF14259_low_16
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14259_low_16
NF14259_low_16
[»] chr3 (3 HSPs)
chr3 (246-371)||(49161284-49161409)
chr3 (20-89)||(49161566-49161635)
chr3 (145-216)||(49161439-49161510)
[»] chr5 (3 HSPs)
chr5 (246-371)||(42651204-42651329)
chr5 (20-87)||(42650978-42651045)
chr5 (145-216)||(42651103-42651174)
[»] chr2 (6 HSPs)
chr2 (246-371)||(23875689-23875814)
chr2 (246-371)||(6085317-6085442)
chr2 (26-89)||(6085098-6085161)
chr2 (151-216)||(6085222-6085287)
chr2 (145-216)||(23875588-23875659)
chr2 (29-87)||(23875473-23875531)
[»] chr7 (2 HSPs)
chr7 (294-371)||(36844920-36844997)
chr7 (26-60)||(36844989-36845023)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 246 - 371
Target Start/End: Complemental strand, 49161409 - 49161284
Alignment:
Q  246 gttgaaccaattaagttaaaaacaaaacaagttaattcataggaaaacaaaatcaaaaccattgccgtgagcaaattttgatgtttgtcttcaacgtggt 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49161409 gttgaaccaattaagttaaaaacaaaacaagttaattcataggaaaacaaaatcaaaaccattgccgtgagcaaattttgatgtttgtcttcaacttggt 49161310  T
Q  346 tttttgttcatcaatgttcccacact 371  Q
    ||||||||||||||||||||||||||    
T  49161309 tttttgttcatcaatgttcccacact 49161284  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 49161635 - 49161566
Alignment:
Q  20 tctttgtcatgttcttaaaacacccggtaaataaaattaaagaacagttaacaagaaataccattgcaga 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49161635 tctttgtcatgttcttaaaacacccggtaaataaaattaaagaacagttaacaagaaataccattgcaga 49161566  T

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Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 49161510 - 49161439
Alignment:
Q  145 cctataaacagacaacaattcagagttttataatccaaaaatcatataattatttcttgaaacacaacaaga 216  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49161510 cctatgaacagacaacaattcagagttttataatccaaaaatcatataattatttcttgaaacacaacaaga 49161439  T

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Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 246 - 371
Target Start/End: Original strand, 42651204 - 42651329
Alignment:
Q  246 gttgaaccaattaagttaaaaacaaaacaagttaattcataggaaaacaaaatcaaaaccattgccgtgagcaaattttgatgtttgtcttcaacgtggt 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  42651204 gttgaaccaattaagttaaaaacaaaacaagttaattcataggaaaacaaaatcaaaaccattgccgtgagcaaattttgatgtttgtcttcaacttgat 42651303  T
Q  346 tttttgttcatcaatgttcccacact 371  Q
    ||||||||||||||||||||||||||    
T  42651304 tttttgttcatcaatgttcccacact 42651329  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 42650978 - 42651045
Alignment:
Q  20 tctttgtcatgttcttaaaacacccggtaaataaaattaaagaacagttaacaagaaataccattgca 87  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42650978 tcttcgtcatgttcttaaaacacccggtaaataaaattaaagaacagttaacaagaaataccattgca 42651045  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 42651103 - 42651174
Alignment:
Q  145 cctataaacagacaacaattcagagttttataatccaaaaatcatataattatttcttgaaacacaacaaga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  42651103 cctataaacagacaacaattcagagttttataatccaaaaatcatattattatttcttgaaagacaacaaga 42651174  T

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Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 246 - 371
Target Start/End: Original strand, 23875689 - 23875814
Alignment:
Q  246 gttgaaccaattaagttaaaaacaaaacaagttaattcataggaaaacaaaatcaaaaccattgccgtgagcaaattttgatgtttgtcttcaacgtggt 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |    
T  23875689 gttgaaccaattaagttaaaaacaaaacaagttaattcataggaaaacaaaatcaaaatcattgccgtgagcaaattttgatgtttgtcttcaacttgat 23875788  T
Q  346 tttttgttcatcaatgttcccacact 371  Q
    ||||||||||||||||||||||||||    
T  23875789 tttttgttcatcaatgttcccacact 23875814  T

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Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 246 - 371
Target Start/End: Original strand, 6085317 - 6085442
Alignment:
Q  246 gttgaaccaattaagttaaaaacaaaacaagttaattcataggaaaacaaaatcaaaaccattgccgtgagcaaattttgatgtttgtcttcaacgtggt 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  6085317 gttgaaccaattaagttaaaaacaaaacaagttaattcataggaaatcaaaatcaaaaccattgccgtgagcaaattttgatgtttgtcttcaacttgat 6085416  T
Q  346 tttttgttcatcaatgttcccacact 371  Q
    |||||||||||||||||| |||||||    
T  6085417 tttttgttcatcaatgtttccacact 6085442  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 6085098 - 6085161
Alignment:
Q  26 tcatgttcttaaaacacccggtaaataaaattaaagaacagttaacaagaaataccattgcaga 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6085098 tcatgttcttaaaacacccggtaaataaaattaaagaacagttaacaagaaataccattgcaga 6085161  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 6085222 - 6085287
Alignment:
Q  151 aacagacaacaattcagagttttataatccaaaaatcatataattatttcttgaaacacaacaaga 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6085222 aacagacaacaattcagagtgttataatccaaaaatcatataattatttcttgaaacacaacaaga 6085287  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 23875588 - 23875659
Alignment:
Q  145 cctataaacagacaacaattcagagttttataatccaaaaatcatataattatttcttgaaacacaacaaga 216  Q
    ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||    
T  23875588 cctatgaacagacaacaattcagagtgttataatccgaaaatcatataattatttcttgaaacacaccaaga 23875659  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 23875473 - 23875531
Alignment:
Q  29 tgttcttaaaacacccggtaaataaaattaaagaacagttaacaagaaataccattgca 87  Q
    |||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  23875473 tgttcttaaaacacctagtaaataaaattaaacaacagttaacaagaaataccattgca 23875531  T

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Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 294 - 371
Target Start/End: Complemental strand, 36844997 - 36844920
Alignment:
Q  294 aaaatcaaaaccattgccgtgagcaaattttgatgtttgtcttcaacgtggttttttgttcatcaatgttcccacact 371  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  36844997 aaaattaaaaccattgccgtgagcaaattttgatgtttgtcttcaacttgattttttgttcatcaatgttcccacact 36844920  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 36845023 - 36844989
Alignment:
Q  26 tcatgttcttaaaacacccggtaaataaaattaaa 60  Q
    ||||||||||||||||||| |||||||||||||||    
T  36845023 tcatgttcttaaaacacccagtaaataaaattaaa 36844989  T

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