View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14259_low_18 (Length: 358)
Name: NF14259_low_18
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14259_low_18 |
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| [»] scaffold0199 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 14 - 341
Target Start/End: Original strand, 1669447 - 1669782
Alignment:
| Q |
14 |
agatgaactgtacaagttatactaagcttgatattgagtaaatacatattagtatataaataagagtgttgg--------atcatgtcagcacaacatca |
105 |
Q |
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| T |
1669447 |
agatgaactatacaagttatactaagcttgatattgaccgaacacatattaatttataaataagagtattgggttagtatatcatgtcagcacagcatca |
1669546 |
T |
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| Q |
106 |
tagttggttagagtctcattacttaaatgtattatatcaagttatcctttttataatgcatccaatcctataatttcaaccatgtgaaaaaacttcaaag |
205 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1669547 |
tagttggttagagtctcattacttaaatgt--tatatcaagttatcctttttataatgcatccaatcctataatttcaaccatgtgaaaaaacttcaaag |
1669644 |
T |
|
| Q |
206 |
ctcacttcattcaatatgcagacaccctgttttcaatgcaggaacttgtgttttaaacaaacac--gatgaggtttcagggtgttaaaaacttgagtttt |
303 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1669645 |
ctcacttcattaaatatgcaaacaccctgttttcaatgcaggaacttgtgttttaaacaaacacaggatgaggtttcagggtgttaaaaacttgagtttt |
1669744 |
T |
|
| Q |
304 |
gtcacttttgaattttgatacaagaacaacattaaact |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
1669745 |
gtcacttttgaattttgatacaagaacaacattaaact |
1669782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 1888695 - 1888501
Alignment:
| Q |
14 |
agatgaactgtacaagttatactaagcttgatattgagtaaatacatattagtatataaataagagtgttgg--------atcatgtcagcacaacatca |
105 |
Q |
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|||| |||| ||||||||||||||||||||| ||||| |||| |||||||||| ||||||||||||| |||| |||||||||||||||||||| |
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| T |
1888695 |
agattaactatacaagttatactaagcttgacattgactaaacacatattagtttataaataagagtattgggttagtatatcatgtcagcacaacatca |
1888596 |
T |
|
| Q |
106 |
tagttggttagagtctcattacttaaatgtattatatcaagttatcctttttataatgcatccaatcctataatttcaaccatgtgaaaaaactt |
200 |
Q |
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| T |
1888595 |
tagttggttagagtctcattacttaaatgtattatatcaagttatcctttttataattcatccaatcctataatttcaaccatgtgaaaaaactt |
1888501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 207 - 331
Target Start/End: Original strand, 1665096 - 1665222
Alignment:
| Q |
207 |
tcacttcattcaatatgcagacaccctgttttcaatgcaggaacttgtgttttaaacaaacac--gatgaggtttcagggtgttaaaaacttgagttttg |
304 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1665096 |
tcacttcattcaatatgcagacaccctgttttcaaggcaggagcttatgtttcaaacaaacacaagatgaggtttcagggtgttaaaaacttgagttttg |
1665195 |
T |
|
| Q |
305 |
tcacttttgaattttgatacaagaaca |
331 |
Q |
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|||||||||||||| |||||||||||| |
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| T |
1665196 |
tcacttttgaatttggatacaagaaca |
1665222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 1664938 - 1665044
Alignment:
| Q |
31 |
tatactaagcttgatattgagtaaatacatattagtatataaataagagtgttgg--------atcatgtcagcacaacatcatagttggttagagtctc |
122 |
Q |
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|||||||||||||| ||||| |||| |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||| |||||| |
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| T |
1664938 |
tatactaagcttgaaattgactaaacacatattagtatataaataagagtattgggttagtatatcatgtcggcacaacatcatagttggttatagtctc |
1665037 |
T |
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| Q |
123 |
attactt |
129 |
Q |
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||||||| |
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| T |
1665038 |
attactt |
1665044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 207 - 331
Target Start/End: Original strand, 7537 - 7663
Alignment:
| Q |
207 |
tcacttcattcaatatgcagacaccctgttttcaatgcaggaacttgtgttttaaacaaacac--gatgaggtttcagggtgttaaaaacttgagttttg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7537 |
tcacttcattcaatatgcagacaccctgttttcaaggcaggagcttatgtttcaaacaaacacaagatgaggtttcagggtgttaaaaacttgagttttg |
7636 |
T |
|
| Q |
305 |
tcacttttgaattttgatacaagaaca |
331 |
Q |
| |
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|||||||||||||| |||||||||||| |
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| T |
7637 |
tcacttttgaatttggatacaagaaca |
7663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 7379 - 7485
Alignment:
| Q |
31 |
tatactaagcttgatattgagtaaatacatattagtatataaataagagtgttgg--------atcatgtcagcacaacatcatagttggttagagtctc |
122 |
Q |
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|||||||||||||| ||||| |||| |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||| |||||| |
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| T |
7379 |
tatactaagcttgaaattgactaaacacatattagtatataaataagagtattgggttagtatatcatgtcggcacaacatcatagttggttatagtctc |
7478 |
T |
|
| Q |
123 |
attactt |
129 |
Q |
| |
|
||||||| |
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| T |
7479 |
attactt |
7485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 5997792 - 5997669
Alignment:
| Q |
84 |
ggatcatgtcagcacaacatcatagttggttagagtctcattacttaaatgtattatatcaagttatcctttttataatgcatccaat-cctataatttc |
182 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| | ||||||||| ||| ||||||| |
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| T |
5997792 |
ggatcatgtcagcataacatcatagttggttagagtctcattactt--atgtattatatcctgttatcctttttatga-gcatccaatccctgtaatttc |
5997696 |
T |
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| Q |
183 |
aaccatgtgaaaaaacttcaaagctca |
209 |
Q |
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||||| ||||||||||||||||||||| |
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| T |
5997695 |
aaccaagtgaaaaaacttcaaagctca |
5997669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 207 - 314
Target Start/End: Complemental strand, 5997645 - 5997536
Alignment:
| Q |
207 |
tcacttcattcaatatgcagacaccctgttttcaatgcaggaacttgtgttttaaacaaacac--gatgaggtttcagggtgttaaaaacttgagttttg |
304 |
Q |
| |
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||||||| |||||| |||| ||||| ||||||||| |||||||||| ||| |||||||||||| |||||||||||||||| | |||| ||||||||||| |
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| T |
5997645 |
tcacttcgttcaatgtgcacacaccatgttttcaaggcaggaacttatgtgttaaacaaacacaagatgaggtttcagggtatcaaaagcttgagttttg |
5997546 |
T |
|
| Q |
305 |
tcacttttga |
314 |
Q |
| |
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|||||||||| |
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|
| T |
5997545 |
tcacttttga |
5997536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 5998300 - 5998264
Alignment:
| Q |
14 |
agatgaactgtacaagttatactaagcttgatattga |
50 |
Q |
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||||||||||||||||||||||||| ||||||||||| |
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| T |
5998300 |
agatgaactgtacaagttatactaaacttgatattga |
5998264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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