View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14259_low_20 (Length: 340)
Name: NF14259_low_20
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14259_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 65 - 325
Target Start/End: Original strand, 27499434 - 27499694
Alignment:
| Q |
65 |
taataggcattccgattttcttcattgagattggttacttagccacaatataatgtccatgctatattagggcatgttattatatatctgaacattttaa |
164 |
Q |
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| T |
27499434 |
taataggcattcccattttcttcattgagattggttacttagccacaatataatgtccatgctctattagggcatgttattaaatatctgaacattttaa |
27499533 |
T |
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| Q |
165 |
gttatctttccatagaaattgatcaaactcagaaggttagcgggcaagtataaagtacattctatatctaactttaaagtgaagaaaatattttctatgt |
264 |
Q |
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| T |
27499534 |
gttatctttccatagaaatcgatcaaacttagaaggttagcgggcaagtataaagtacattctatatctaactttaaagtgaagaaaatattttctatgt |
27499633 |
T |
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| Q |
265 |
tccatttttaagcaatggtttatacaagtgaaggagtaaagttacaaaaacatcacctttg |
325 |
Q |
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| T |
27499634 |
tccatttttaagcaatggtttatacaagtgaaggagtaaagttacaaaaacatcacctttg |
27499694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 79 - 325
Target Start/End: Original strand, 27514238 - 27514486
Alignment:
| Q |
79 |
attttcttcattgagattggttacttagccacaatat--aatgtccatgctatattagggcatgttattatatatctgaacattttaagttatctttcca |
176 |
Q |
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| T |
27514238 |
attttcttcattgaaattggttacttagccacaatatataatgtccatgctctattagggcatgttattatatatctgaacattttaagttatctttcca |
27514337 |
T |
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| Q |
177 |
tagaaattgatcaaactcagaaggttagcgggcaagtataaagtacattctatatctaactttaaagtgaagaaaatattttctatgttccatttttaag |
276 |
Q |
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| T |
27514338 |
tagaaattgatcaaactcagaaggttagcgggcaagtataaagtacattctatatctaactttaaagtgaagaaaatattttctatgttccatttttaag |
27514437 |
T |
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| Q |
277 |
caatggtttatacaagtgaaggagtaaagttacaaaaacatcacctttg |
325 |
Q |
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| T |
27514438 |
caatggtttatacaagtgaaggagtaaagttacaaaaacatcacctttg |
27514486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 27520602 - 27520694
Alignment:
| Q |
79 |
attttcttcattgagattggttacttagccacaatataatgtccatgctatattagggcatgttattatatatctgaacattttaagttatct |
171 |
Q |
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| T |
27520602 |
attttcttcattgaaattggttacttagccacaatataatgttcatgctctattagggcatgttattatatatctgaacatcttaagttatct |
27520694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 227 - 330
Target Start/End: Original strand, 27520713 - 27520817
Alignment:
| Q |
227 |
tatatctaactttaaagtgaagaaaatattttctatgttccattttta-agcaatggtttatacaagtgaaggagtaaagttacaaaaacatcacctttg |
325 |
Q |
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||||||||||||||||||||||||| | || ||| |||| ||||||| |||||| |||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
27520713 |
tatatctaactttaaagtgaagaaatttttatctctgtttcattttttgagcaattgtttatacaagtgaaggagtaaagttgcaaaaacttcacctttg |
27520812 |
T |
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| Q |
326 |
cttct |
330 |
Q |
| |
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|||| |
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| T |
27520813 |
tttct |
27520817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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