View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14259_low_24 (Length: 319)
Name: NF14259_low_24
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14259_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 103 - 305
Target Start/End: Complemental strand, 40129797 - 40129595
Alignment:
| Q |
103 |
agtgtgctaaatatatttccatttttgaagtggaaactgatttgcaagctggagctaaccacggatatgaggtaaaacaattagacaacaaactgcgtca |
202 |
Q |
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| T |
40129797 |
agtgagctaaatatatttccatttttgaagtggaaactgatttgcaagctggagctaaccacggatatgaggtaaaacaattagataacaaactacgtca |
40129698 |
T |
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| Q |
203 |
aaaataattataatgatatatttaagtgaaataatattaattgaaatacaatgtttctgatgtattcagctgttgtggatcatacttattggactcatat |
302 |
Q |
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| T |
40129697 |
aaaataattataatgatatatttaagtgaaataatattaattgaaatacaatgttcctgatgtattcagctgttgtggatcatacttattggactcatat |
40129598 |
T |
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| Q |
303 |
ttg |
305 |
Q |
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||| |
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| T |
40129597 |
ttg |
40129595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 40140774 - 40140722
Alignment:
| Q |
131 |
agtggaaactgatttgcaagctggagctaaccacggatatgaggtaaaacaat |
183 |
Q |
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| T |
40140774 |
agtggaaactgatttgcaagctggagctaatcacggatacgaggtaaaacaat |
40140722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 31828849 - 31828913
Alignment:
| Q |
123 |
atttttgaagtggaaactgatttgcaagctggagctaaccacggatatgaggtaaaacaattaga |
187 |
Q |
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| T |
31828849 |
atttttgtagtggaaaccgatttgcaggccggagctaaccacaaatatgaggtaaagcatttaga |
31828913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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