View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14259_low_28 (Length: 265)

Name: NF14259_low_28
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14259_low_28
NF14259_low_28
[»] scaffold0314 (2 HSPs)
scaffold0314 (162-246)||(19786-19872)
scaffold0314 (74-154)||(19384-19464)
[»] chr1 (7 HSPs)
chr1 (20-73)||(46312065-46312118)
chr1 (26-77)||(14512669-14512720)
chr1 (24-73)||(2999491-2999540)
chr1 (25-77)||(46524536-46524588)
chr1 (25-73)||(46525852-46525900)
chr1 (24-74)||(3000222-3000272)
chr1 (20-74)||(46313279-46313333)
[»] chr2 (7 HSPs)
chr2 (20-74)||(10851912-10851966)
chr2 (20-75)||(10853150-10853205)
chr2 (25-74)||(27552451-27552500)
chr2 (20-73)||(28851677-28851730)
chr2 (20-75)||(45412333-45412388)
chr2 (20-74)||(45413482-45413536)
chr2 (25-73)||(27553817-27553865)
[»] chr7 (6 HSPs)
chr7 (25-74)||(9805436-9805485)
chr7 (25-73)||(35080283-35080331)
chr7 (25-74)||(35081611-35081660)
chr7 (25-74)||(23621991-23622040)
chr7 (199-246)||(38847032-38847079)
chr7 (20-74)||(12961983-12962037)
[»] chr4 (11 HSPs)
chr4 (20-73)||(33997901-33997954)
chr4 (20-74)||(8747690-8747744)
chr4 (20-74)||(8749051-8749105)
chr4 (20-74)||(40168638-40168692)
chr4 (25-74)||(8896963-8897012)
chr4 (20-73)||(55986314-55986367)
chr4 (20-72)||(40169784-40169836)
chr4 (21-84)||(53312547-53312610)
chr4 (20-70)||(55984768-55984818)
chr4 (20-77)||(31435857-31435913)
chr4 (201-246)||(35087715-35087760)
[»] chr3 (10 HSPs)
chr3 (20-73)||(26722533-26722586)
chr3 (21-77)||(32831096-32831152)
chr3 (20-73)||(10584087-10584140)
chr3 (20-77)||(26723909-26723966)
chr3 (20-73)||(32829740-32829793)
chr3 (26-75)||(51220613-51220662)
chr3 (28-74)||(53157189-53157234)
chr3 (25-74)||(21326319-21326368)
chr3 (22-63)||(25154444-25154485)
chr3 (20-73)||(51219462-51219515)
[»] chr6 (7 HSPs)
chr6 (20-76)||(20410222-20410278)
chr6 (20-74)||(20409066-20409120)
chr6 (25-76)||(16864502-16864553)
chr6 (20-74)||(16859335-16859389)
chr6 (20-70)||(22417661-22417711)
chr6 (20-77)||(12181591-12181648)
chr6 (25-73)||(6978147-6978195)
[»] chr8 (4 HSPs)
chr8 (20-74)||(38612218-38612272)
chr8 (20-74)||(38613422-38613476)
chr8 (24-77)||(13883877-13883930)
chr8 (202-246)||(19991558-19991602)
[»] chr5 (10 HSPs)
chr5 (20-74)||(3597322-3597376)
chr5 (20-77)||(124534-124591)
chr5 (20-73)||(3598927-3598980)
chr5 (20-73)||(5504141-5504194)
chr5 (20-74)||(121348-121402)
chr5 (20-74)||(24242016-24242070)
chr5 (25-73)||(17415699-17415747)
chr5 (43-84)||(14189653-14189694)
chr5 (20-73)||(17414544-17414597)
chr5 (20-76)||(8061853-8061909)


Alignment Details
Target: scaffold0314 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 162 - 246
Target Start/End: Original strand, 19786 - 19872
Alignment:
Q  162 atgcatccattattcaggcacacaa--caaaattttaccctagagctagaaagtctattttcttgggttacaagtcaggttacaaag 246  Q
    |||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19786 atgcatccattattcaggcacacaaaacaaaactttaccctagagctagaaagtctattttcttgggttacaagtcaggttacaaag 19872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 19384 - 19464
Alignment:
Q  74 ttttctttattaacttagttcctacatctttactcaatcacaaatctccttttcaaaatctttttcaaagtctttggttat 154  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19384 ttttcttaattaacatagttactacatctttactcaatcacaaatctccttttcaaaatctttttcaaagtctttggttat 19464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 46312118 - 46312065
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 73  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46312118 ggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 46312065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 14512669 - 14512720
Alignment:
Q  26 aaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctttt 77  Q
    |||||||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  14512669 aaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcctttt 14512720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 2999540 - 2999491
Alignment:
Q  24 tcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 73  Q
    |||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  2999540 tcaaaatcgcaacattgacaaagttagagggtcaaaactgtagtttagcc 2999491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 46524588 - 46524536
Alignment:
Q  25 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctttt 77  Q
    |||||| |||||||||||||| |||||||| |||||||||||||||| |||||    
T  46524588 caaaattgcaacattggtaaacttagggggccaaaactgtagtttagtctttt 46524536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 46525852 - 46525900
Alignment:
Q  25 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 73  Q
    ||||||||||||||||| ||| |||||||| ||||||||||| ||||||    
T  46525852 caaaatcgcaacattggcaaacttagggggccaaaactgtagattagcc 46525900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 3000222 - 3000272
Alignment:
Q  24 tcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    ||||||||||||||||   ||| ||| ||||||||||||||||||||||||    
T  3000222 tcaaaatcgcaacattaacaaaattaaggggtcaaaactgtagtttagcct 3000272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 46313279 - 46313333
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    |||| |||||||||| | |||  ||||||||||||||||||||| ||||||||||    
T  46313279 ggggccaaaatcgcacctttgtgaaagttagggggtcaaaactgcagtttagcct 46313333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 10851966 - 10851912
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10851966 ggggttaaaatcgcaacattgataaagttagggggtcaaaactgtagtttagcct 10851912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 10853150 - 10853205
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctt 75  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||    
T  10853150 ggggtcaaaatcgcaacattgataaagttaaggggtcaaaactgtagtttatcctt 10853205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 27552500 - 27552451
Alignment:
Q  25 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  27552500 caaaatcgcaacattggcaaatttagggggtcaaaactgtagtttagcct 27552451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 28851677 - 28851730
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 73  Q
    |||||||||||||||||||||  ||||||||||||||||||||| |||||||||    
T  28851677 ggggtcaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcc 28851730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 45412388 - 45412333
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctt 75  Q
    ||||||||||||||| |||||  ||||||||||||||||||||| |||||||||||    
T  45412388 ggggtcaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcctt 45412333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 45413482 - 45413536
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    |||| |||||||||| |||||  ||||||||||||||||||||| ||||||||||    
T  45413482 ggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcct 45413536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 27553817 - 27553865
Alignment:
Q  25 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 73  Q
    ||||||||||||||| | ||| ||||||||| |||||||||||||||||    
T  27553817 caaaatcgcaacattagcaaacttagggggttaaaactgtagtttagcc 27553865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 9805436 - 9805485
Alignment:
Q  25 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  9805436 caaaatcgcaacattggcaaacttagggggtcaaaactgtagtttagcct 9805485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 35080331 - 35080283
Alignment:
Q  25 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 73  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  35080331 caaaatcgcaacattggcaaacttagggggtcaaaactgtagtttagcc 35080283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 35081611 - 35081660
Alignment:
Q  25 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    ||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  35081611 caaaatcgcaacattgacaaacttagggggtcaaaactgtagtttagcct 35081660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 23621991 - 23622040
Alignment:
Q  25 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    ||||||||||||||||| ||| ||||| || |||||||||||||||||||    
T  23621991 caaaatcgcaacattggcaaacttaggaggccaaaactgtagtttagcct 23622040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 38847079 - 38847032
Alignment:
Q  199 ctagagctagaaagtctattttcttgggttacaagtcaggttacaaag 246  Q
    ||||||| ||||||||| |||||||||| ||||||||||||| |||||    
T  38847079 ctagagccagaaagtctgttttcttgggatacaagtcaggtttcaaag 38847032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 12962037 - 12961983
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    |||| |||||||||| |||||  ||||||||||||| ||||||| ||||||||||    
T  12962037 ggggccaaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagcct 12961983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 33997901 - 33997954
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 73  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  33997901 ggggtcaaaatcgcaacattagcaaacttagggggtcaaaactgtagtttagcc 33997954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 8747744 - 8747690
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    |||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  8747744 ggggccaaaatcgcaacattggcaaacttaaggggtcaaaactgtagtttagcct 8747690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 8749051 - 8749105
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    |||| ||||||||||||||||| ||| ||| |||||||||| |||||||||||||    
T  8749051 ggggccaaaatcgcaacattggcaaacttaaggggtcaaaagtgtagtttagcct 8749105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 40168692 - 40168638
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    |||| |||||||||| |||||  ||||||||||||||||||||| ||||||||||    
T  40168692 ggggccaaaatcgcaccattgtaaaagttagggggtcaaaactgcagtttagcct 40168638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 8896963 - 8897012
Alignment:
Q  25 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    |||||||| |||||||| ||| |||||| |||||||||||||||||||||    
T  8896963 caaaatcgtaacattggcaaacttagggagtcaaaactgtagtttagcct 8897012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 55986314 - 55986367
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 73  Q
    ||||||||||||||| |||||  ||||||||||||| ||||||| |||||||||    
T  55986314 ggggtcaaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagcc 55986367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 40169784 - 40169836
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagc 72  Q
    |||| |||||||||| |||||  ||||||||||||||||||||| ||||||||    
T  40169784 ggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagc 40169836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 53312547 - 53312610
Alignment:
Q  21 gggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagccttttctttatt 84  Q
    |||||||||||||||| | |  ||||||||||||| ||||||||  || |||||||||||||||    
T  53312547 gggtcaaaatcgcaacttcgtgaaagttagggggtgaaaactgttattaagccttttctttatt 53312610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 55984818 - 55984768
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagttta 70  Q
    ||||||||||||||| |||||  ||||||||||||| ||||||| ||||||    
T  55984818 ggggtcaaaatcgcaccattgtgaaagttagggggttaaaactgcagttta 55984768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 31435857 - 31435913
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctttt 77  Q
    |||||||||||||||||||||| |||  ||  ||| ||||||||||||||||||||||    
T  31435857 ggggtcaaaatcgcaacattggcaaacata-agggccaaaactgtagtttagcctttt 31435913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 35087715 - 35087760
Alignment:
Q  201 agagctagaaagtctattttcttgggttacaagtcaggttacaaag 246  Q
    ||||||| |||| | |||||||||||||||||||| ||||||||||    
T  35087715 agagctaaaaagacaattttcttgggttacaagtctggttacaaag 35087760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 26722586 - 26722533
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 73  Q
    |||| ||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  26722586 ggggccaaaatcgcaacattggtaaacttagggggccaaaactgtagtttagcc 26722533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 32831096 - 32831152
Alignment:
Q  21 gggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctttt 77  Q
    ||||||||||||||||||||  |||  ||||||||||||||||||||||||||||||    
T  32831096 gggtcaaaatcgcaacattgacaaacatagggggtcaaaactgtagtttagcctttt 32831152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 10584087 - 10584140
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 73  Q
    |||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||    
T  10584087 ggggccaaaatcgcaacattggcaaacttaggggatcaaaactgtagtttagcc 10584140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 26723909 - 26723966
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctttt 77  Q
    |||| |||||| |||||||| ||||| |||||||| ||||||||||||||||||||||    
T  26723909 ggggccaaaattgcaacattagtaaacttagggggccaaaactgtagtttagcctttt 26723966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 32829793 - 32829740
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 73  Q
    |||| ||||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  32829793 ggggccaaaatcgcaaaattggcaaacttagggggtcaaaactgtagtttagcc 32829740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 51220613 - 51220662
Alignment:
Q  26 aaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctt 75  Q
    |||||||||||||||  ||| ||| |||||||||||||||||||||||||    
T  51220613 aaaatcgcaacattgacaaacttaaggggtcaaaactgtagtttagcctt 51220662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 53157189 - 53157234
Alignment:
Q  28 aatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    |||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  53157189 aatcgcaacattggcaaacttagggg-tcaaaactgtagtttagcct 53157234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 21326368 - 21326319
Alignment:
Q  25 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    |||||| |||| ||||||||| ||| |||||||||| |||||||||||||    
T  21326368 caaaattgcaatattggtaaacttaaggggtcaaaagtgtagtttagcct 21326319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 25154444 - 25154485
Alignment:
Q  22 ggtcaaaatcgcaacattggtaaagttagggggtcaaaactg 63  Q
    |||||||||| |||| |||||||||||||||||| |||||||    
T  25154444 ggtcaaaatcacaactttggtaaagttagggggttaaaactg 25154485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 51219515 - 51219462
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 73  Q
    |||| |||||| |||||||||  ||| ||||| |||||||||||||||||||||    
T  51219515 ggggccaaaattgcaacattgacaaacttaggaggtcaaaactgtagtttagcc 51219462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 20410222 - 20410278
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagccttt 76  Q
    ||||||||||||||| |||||  ||||||||||||||||||||| ||||||||||||    
T  20410222 ggggtcaaaatcgcaccattgtaaaagttagggggtcaaaactgcagtttagccttt 20410278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 20409120 - 20409066
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    |||| |||||||||| |||||  ||||||||||||||||||||| ||||||||||    
T  20409120 ggggccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcct 20409066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 16864502 - 16864553
Alignment:
Q  25 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagccttt 76  Q
    |||||||||| |||||  ||||||||||||| ||||||| ||||||||||||    
T  16864502 caaaatcgcaccattgtaaaagttagggggttaaaactgcagtttagccttt 16864553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 16859389 - 16859335
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    ||||||||||||||| |||||  ||||||||||||| |||| || ||||||||||    
T  16859389 ggggtcaaaatcgcaccattgtgaaagttagggggttaaaattgcagtttagcct 16859335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 22417711 - 22417661
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagttta 70  Q
    |||| |||||||| |||||| | ||| ||||||||||||||||||||||||    
T  22417711 ggggccaaaatcgtaacattagcaaacttagggggtcaaaactgtagttta 22417661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 12181648 - 12181591
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctttt 77  Q
    |||| ||||||| |||||||   ||||||||| ||||||||||| |||||||||||||    
T  12181648 ggggccaaaatcccaacatttacaaagttaggaggtcaaaactgcagtttagcctttt 12181591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 6978147 - 6978195
Alignment:
Q  25 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 73  Q
    |||||||||| |||||  ||||||||||||| ||||||| |||||||||    
T  6978147 caaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagcc 6978195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 38612272 - 38612218
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    |||| ||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  38612272 ggggccaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcct 38612218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 38613422 - 38613476
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    |||| ||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  38613422 ggggccaaaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcct 38613476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 13883877 - 13883930
Alignment:
Q  24 tcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctttt 77  Q
    |||||||||||||||||  ||| ||| |||||||||||||||||||||||||||    
T  13883877 tcaaaatcgcaacattgacaaacttaaggggtcaaaactgtagtttagcctttt 13883930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 19991558 - 19991602
Alignment:
Q  202 gagctagaaagtctattttcttgggttacaagtcaggttacaaag 246  Q
    |||||||||||| | ||||||||||||||||||||||||| ||||    
T  19991558 gagctagaaagtttgttttcttgggttacaagtcaggttataaag 19991602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 3597376 - 3597322
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    |||| ||||||||||||||| ||||| |||||||| |||||||||||||||||||    
T  3597376 ggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcct 3597322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 124534 - 124591
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcctttt 77  Q
    |||| ||||||||||||||||| ||| ||| | |||||||||||||||||||||||||    
T  124534 ggggccaaaatcgcaacattggcaaacttaagaggtcaaaactgtagtttagcctttt 124591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 3598927 - 3598980
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 73  Q
    |||| ||||||||||||||||||||| |||||||  ||||||||||||||||||    
T  3598927 ggggccaaaatcgcaacattggtaaatttaggggaccaaaactgtagtttagcc 3598980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 5504141 - 5504194
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 73  Q
    |||||||||||||||||||||| ||| ||| | |||||||||||||||||||||    
T  5504141 ggggtcaaaatcgcaacattggcaaacttaagaggtcaaaactgtagtttagcc 5504194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 121402 - 121348
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    ||||||||||| |||||||||| ||| |||| | |||||||||||||||||||||    
T  121402 ggggtcaaaattgcaacattggcaaatttagagtgtcaaaactgtagtttagcct 121348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 24242070 - 24242016
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcct 74  Q
    ||||||||||||||| | |||  ||||||||||||||||||||| ||||||||||    
T  24242070 ggggtcaaaatcgcacctttgtgaaagttagggggtcaaaactgcagtttagcct 24242016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 17415699 - 17415747
Alignment:
Q  25 caaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 73  Q
    |||||||||| |||||  ||||||||||||||||||||| |||||||||    
T  17415699 caaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcc 17415747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 14189694 - 14189653
Alignment:
Q  43 aaagttagggggtcaaaactgtagtttagccttttctttatt 84  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||    
T  14189694 aaagttagggggtcaaaactgcagtttagccatttatttatt 14189653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 17414597 - 17414544
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 73  Q
    |||| |||||||||| |||||  |||||||| |||||||||||| |||||||||    
T  17414597 ggggccaaaatcgcaccattgtaaaagttagagggtcaaaactgcagtttagcc 17414544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 8061909 - 8061853
Alignment:
Q  20 ggggtcaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagccttt 76  Q
    |||| |||||||||| ||||   ||||||||||||| ||||||| ||||||||||||    
T  8061909 ggggccaaaatcgcaccattctgaaagttagggggttaaaactgcagtttagccttt 8061853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University