View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14259_low_3 (Length: 628)
Name: NF14259_low_3
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14259_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 173 - 609
Target Start/End: Complemental strand, 23429736 - 23429300
Alignment:
| Q |
173 |
atgggaatttaattttaagagagtaaccatctgtaannnnnnnngtaattcgctgactaagcatgaaactttcatgaatatagctttggtttgacacatc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23429736 |
atgggaatttaattttaagagagtaaccatctgtaattttttttgtaattcgctgactaagcatgaaacttttatgaatatagctttggtttgacacatc |
23429637 |
T |
|
| Q |
273 |
ccttttaaattaaatgctacgtaacaatccgacgcttttgtgtttcaaatggtactgtaatcaaatggtagtagcatgaaagtccagagcatttgtggaa |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23429636 |
ccttttaaattaaatgctacgtaacaatccgacgcttttgtgtttcaaatggtactgtaatcaaatggtagtagcatgaaagtccagagcatttgtggaa |
23429537 |
T |
|
| Q |
373 |
tcggcagtatttattcgaggttgtttgcaggacagtacatccannnnnnncatagtgtaaagcggggaagaaagtcctggagcaaactgaatcaggaagt |
472 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23429536 |
tcgacagtatttattcgaggttgtttgcaggacagtacatccatttttttcatagtgtaaagcggggaagaaagtcctggagcaaactgaatcaggaagt |
23429437 |
T |
|
| Q |
473 |
aatttattcaaggataatgttaactagtgtctctggagcactaattaaagagactaatttaaaaaatttgcattgattaacacgaccctttattcaaaac |
572 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
23429436 |
aatttattcaagggtaatattaactagtgtctctggagcactaattaaagagactaatttaaaaattttgcattggttaacacgaccctttattcaaaac |
23429337 |
T |
|
| Q |
573 |
tacgagtggaaatgaaagggatccttatggtcctatt |
609 |
Q |
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||||||| | ||||||||||||||||||||||||||| |
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| T |
23429336 |
tacgagtcggaatgaaagggatccttatggtcctatt |
23429300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 23429892 - 23429804
Alignment:
| Q |
17 |
atagatccagagacaattgccaaagtccatttgagaacattgttaattcgtaagtattaaacttgcaatttgtcagcgttgtaatatca |
105 |
Q |
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| T |
23429892 |
atagatccagagacaattgccaaagtccatttgagaacattgttaattcgtaagtattaaacttgcaatttgtcagcgttgtaatatca |
23429804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 548
Target Start/End: Complemental strand, 38778913 - 38778847
Alignment:
| Q |
482 |
aaggataatgttaactagtgtctctggagcactaattaaagagactaatttaaaaaatttgcattga |
548 |
Q |
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|||| |||||||||||||||| |||| |||||| ||| |||||||||||||||| |||||||||| |
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| T |
38778913 |
aagggtaatgttaactagtgttcctggggcactagataaggagactaatttaaaaattttgcattga |
38778847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 483
Target Start/End: Complemental strand, 32550284 - 32550228
Alignment:
| Q |
427 |
gtgtaaagcggggaagaaagtcctggagcaaactgaatcaggaagtaatttattcaa |
483 |
Q |
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||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||| |
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| T |
32550284 |
gtgtaaagcggggaagaaagttcaggagctgtctgaatcaggacgtaatttattcaa |
32550228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 483 - 525
Target Start/End: Complemental strand, 1427570 - 1427528
Alignment:
| Q |
483 |
aggataatgttaactagtgtctctggagcactaattaaagaga |
525 |
Q |
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|||| ||||||||||||||| ||||||||||||||||| |||| |
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| T |
1427570 |
aggacaatgttaactagtgtttctggagcactaattaaggaga |
1427528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 488 - 530
Target Start/End: Complemental strand, 8625530 - 8625488
Alignment:
| Q |
488 |
aatgttaactagtgtctctggagcactaattaaagagactaat |
530 |
Q |
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||||||||||||||||| |||||||||| ||||| |||||||| |
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| T |
8625530 |
aatgttaactagtgtctttggagcactagttaaatagactaat |
8625488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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