View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14259_low_32 (Length: 248)
Name: NF14259_low_32
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14259_low_32 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 4 - 248
Target Start/End: Complemental strand, 34781926 - 34781681
Alignment:
| Q |
4 |
agtagcaaagggaggctatatgttggtgattcatcctctcaagatattttaggaggaaagaagtt-agctgcgacaccagctcttgcaagtggaacacac |
102 |
Q |
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| T |
34781926 |
agtaccaaagagaggctatatgttggtgattcatcctctcaagatattttaggaggaaagaagtttatctgcgacaccagctcttgcaagaggaacacac |
34781827 |
T |
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| Q |
103 |
atgagattatgtgcccttggaactgtgagaccaggtctctcatccatgctaaccttagcatcatcacctttcaatatttgtccatgtgggcctggtactt |
202 |
Q |
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| T |
34781826 |
atgagattatgtgcccttggaactgtgagaccaggtctctcttccatgctaaccttagcataatcaccattcaatatttctccatgttgaccaggtactt |
34781727 |
T |
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| Q |
203 |
gtagatcaaaacactgaataatagatgcaagcagtgttgccattcc |
248 |
Q |
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| T |
34781726 |
ggagatcgaagcattggataatagatgcaatcattgtggccattcc |
34781681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 67 - 248
Target Start/End: Original strand, 34762326 - 34762507
Alignment:
| Q |
67 |
ttagctgcgacaccagctcttgcaagtggaacacacatgagattatgtgcccttggaactgtgagaccaggtctctcatccatgctaaccttagcatcat |
166 |
Q |
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| T |
34762326 |
ttagcagcaacaccagctcttgcaagtggaacacacatgagattatgtgctcttggaaccgtaagaccaggtctctcatccatgctaaccttaacatcat |
34762425 |
T |
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| Q |
167 |
cacctttcaatatttgtccatgtgggcctggtacttgtagatcaaaacactgaataatagatgcaagcagtgttgccattcc |
248 |
Q |
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| T |
34762426 |
cacctttcaatatttgtccatgtgggcctggtacttgtagatcaaaacactgaataattgatgaaagtagtgttgccattcc |
34762507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 50 - 248
Target Start/End: Original strand, 34754329 - 34754528
Alignment:
| Q |
50 |
ttttaggaggaaagaagtt-agctgcgacaccagctcttgcaagtggaacacacatgagattatgtgcccttggaactgtgagaccaggtctctcatcca |
148 |
Q |
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||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || || |||| |
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| T |
34754329 |
ttttaggaggaaagaagtttatctgcgacaccagctcttgtgagtggaacacacatgagattatgtgtccttggaactgtgagaccaggcctttcttcca |
34754428 |
T |
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| Q |
149 |
tgctaaccttagcatcatcacctttcaatatttgtccatgtgggcctggtacttgtagatcaaaacactgaataatagatgcaagcagtgttgccattcc |
248 |
Q |
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| T |
34754429 |
tgctaacctttgcatcatcacctttcaatatttgtccttgtgggcctggtacctgcagatcaaagcactggataatagatgcaagcagtgtggccattcc |
34754528 |
T |
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