View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14259_low_34 (Length: 240)

Name: NF14259_low_34
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14259_low_34
NF14259_low_34
[»] chr7 (1 HSPs)
chr7 (60-222)||(30505965-30506126)
[»] chr1 (3 HSPs)
chr1 (55-222)||(28914194-28914362)
chr1 (60-222)||(26404854-26405017)
chr1 (60-222)||(26400556-26400719)
[»] chr6 (2 HSPs)
chr6 (60-222)||(7033625-7033788)
chr6 (60-222)||(7037925-7038088)
[»] chr5 (2 HSPs)
chr5 (60-222)||(17793045-17793208)
chr5 (60-222)||(17797343-17797506)
[»] chr4 (2 HSPs)
chr4 (60-222)||(1545221-1545384)
chr4 (60-222)||(1540923-1541086)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 60 - 222
Target Start/End: Complemental strand, 30506126 - 30505965
Alignment:
Q  60 tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtttcctagtttctagttcagtttc 159  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30506126 tgttagctattgtgtttagaactgctgccacgtctgcagagtttattttacttctgttttgaatcttttaaatatgtttcctagtttctagttcagtttc 30506027  T
Q  160 ttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttatagg 222  Q
    |||||||||||||||||||||||||          ||||||||||||||||||||||||||||    
T  30506026 ttttcctcctagttttcagcaagca-tttttttttagtattctgtcgtggcctaacttatagg 30505965  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 222
Target Start/End: Original strand, 28914194 - 28914362
Alignment:
Q  55 gtttttgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttc 153  Q
    |||| ||||| ||||||||||||||||||||||||||| |   ||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||    
T  28914194 gtttctgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttc 28914293  T
Q  154 agtttcttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttatagg 222  Q
    |||||  ||||||||| ||||||||||| |||         |||||||| |||||||||||||||||||    
T  28914294 agttttatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttatagg 28914362  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 26404854 - 26405017
Alignment:
Q  60 tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt 158  Q
    ||||| ||||||||||||||||||||||||||| |   ||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  26404854 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt 26404953  T
Q  159 cttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttatagg 222  Q
      ||||||||| ||||||||||| |||         |||||||| |||||||||||||||||||    
T  26404954 tatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttatagg 26405017  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 26400556 - 26400719
Alignment:
Q  60 tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt 158  Q
    ||||| ||||||||||||||||||||||||||| |   ||||| |||||| |||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  26400556 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctattttgaatattttaaatatgttctcctaatttctagttcagttt 26400655  T
Q  159 cttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttatagg 222  Q
      ||||||||| ||||||||||| |||         |||||||| |||||||||||||||||||    
T  26400656 tatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttatagg 26400719  T

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Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 7033625 - 7033788
Alignment:
Q  60 tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt 158  Q
    ||||| ||||||||||||||||||||||||||| |   ||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  7033625 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt 7033724  T
Q  159 cttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttatagg 222  Q
      ||||||||| ||||||||||| |||         |||||||| |||||||||||||||||||    
T  7033725 tatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttatagg 7033788  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 7037925 - 7038088
Alignment:
Q  60 tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt 158  Q
    ||||| ||||||||||||||||||||||||||| |   ||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  7037925 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt 7038024  T
Q  159 cttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttatagg 222  Q
      ||||||||| ||||||||||| |||         |||||||| | |||||||||||||||||    
T  7038025 tatttcctccttgttttcagcaatcagtttaattctagtattctattgtggcctaacttatagg 7038088  T

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Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 17793045 - 17793208
Alignment:
Q  60 tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt 158  Q
    ||||| ||||||||||||||||||||||||||| |   ||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  17793045 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt 17793144  T
Q  159 cttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttatagg 222  Q
      ||||||||| ||||||||||| |||         |||||||| |||||||||||||||||||    
T  17793145 tatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttatagg 17793208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 17797343 - 17797506
Alignment:
Q  60 tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt 158  Q
    ||||| ||||||||||||||||||||||||||| |   ||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  17797343 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt 17797442  T
Q  159 cttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttatagg 222  Q
      ||||||||| ||||||||||| |||         |||||||| |||||||||||||||||||    
T  17797443 tatttcctccttgttttcagcaatcagtttaactctagtattctatcgtggcctaacttatagg 17797506  T

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Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 1545221 - 1545384
Alignment:
Q  60 tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt 158  Q
    ||||| ||||||||||||||||||||||||||| |   ||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  1545221 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt 1545320  T
Q  159 cttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttatagg 222  Q
      ||||||||| ||||||||||| |||         |||||||| |||||||||||||||||||    
T  1545321 tatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttatagg 1545384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 1540923 - 1541086
Alignment:
Q  60 tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt 158  Q
    ||||| ||||||||||||||||||||||||||| | | ||||| |||||| |||| |||||||||||||||||||||| ||||| ||||||||| |||||    
T  1540923 tgttaactattgtgtttagaactgctgccacgtttgttgagttcattttaattctattttgaatattttaaatatgttctcctaatttctagtttagttt 1541022  T
Q  159 cttttcctcctagttttcagcaagcagnnnnnnnnnagtattctgtcgtggcctaacttatagg 222  Q
      ||||||||| ||||||||||| |||         |||||||| |||||||||||||||||||    
T  1541023 tatttcctccttgttttcagcaatcagtttaattctagtattctatcgtggcctaacttatagg 1541086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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