View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14259_low_36 (Length: 229)
Name: NF14259_low_36
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14259_low_36 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 43804434 - 43804662
Alignment:
| Q |
1 |
ctagtttgtatctattttgaacatgaatctcatcttaaatcatgatccactttgatgaatcttgattcattaggatgaattctgattcattctaatgaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43804434 |
ctagtttgtatctattttgaacatgaatctcatcttaaatcatgatccactttgatgaatcttgattcattaggatgaattctgattcattctaatgaat |
43804533 |
T |
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| Q |
101 |
cattacctattttcggtgtagcaaacaactgtgtttgttaattttgtatgaccaatcacttttcttttgtcatttaattgatgacttagaatcttgaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43804534 |
cattacctattttcggtgtagcaaacaactgtgtttgttaattttgtatgaccaatcacttttcttttgtcctttaattgatgacttagaatcttgaatt |
43804633 |
T |
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| Q |
201 |
attgaggttagcgaaaagaaaaacaactc |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43804634 |
attgaggttagcgaaaagaaaaacaactc |
43804662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 19453965 - 19454025
Alignment:
| Q |
53 |
tgatgaatcttgattcattaggatgaattctgattcattctaatgaatcattacctatttt |
113 |
Q |
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| T |
19453965 |
tgatgaatcccgattcactatgatgaatcttgattcattctaatgaatcactacctatttt |
19454025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 7057353 - 7057454
Alignment:
| Q |
1 |
ctagtttgtatctattttgaacatgaatctcatcttaaatcatgatccactttgatgaatcttgattcattaggatgaattctgattcattctaatgaat |
100 |
Q |
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||||||| |||||||||| || |||||||||||||| | || ||| || | ||||||||| |||||| | |||||||||||| || |||| |||||| |
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| T |
7057353 |
ctagtttatatctattttaaatatgaatctcatcttgagtcccgatacattaagatgaatctcgattcacaacgatgaattctgaatcgttcttatgaat |
7057452 |
T |
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| Q |
101 |
ca |
102 |
Q |
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|| |
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| T |
7057453 |
ca |
7057454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 18900587 - 18900683
Alignment:
| Q |
1 |
ctagtttgtatctattttgaacatgaatctcatcttaaatcatgatccactttgatgaatcttgattcattaggatgaattctgattcattctaatgaa |
99 |
Q |
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||||| ||||||||||| ||||||||||||||||| |||| ||||| | | |||||||||| |||||| || |||||||||||| ||||| ||||||| |
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| T |
18900587 |
ctagtgtgtatctatttc-aacatgaatctcatctttaatcgtgatc-attatgatgaatctcgattcactatgatgaattctgactcattgtaatgaa |
18900683 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 32117752 - 32117805
Alignment:
| Q |
157 |
cacttttcttttgtcatttaattgatgacttagaatcttgaattattgaggttag |
211 |
Q |
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| T |
32117752 |
cacttttcttttgtcatttgatttatgactt-gaatcttgaatcattgaggttag |
32117805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 9573781 - 9573695
Alignment:
| Q |
7 |
tgtatctattttgaacatgaatctcatcttaaatcatgatccactttgatgaatcttgattcattaggatgaattctgattcattct |
93 |
Q |
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|||||||| |||| |||||||||||||||| ||||||||| | | |||||||||| |||||| | | |||||||||||| ||||| |
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| T |
9573781 |
tgtatctactttggacatgaatctcatcttgaatcatgatttattatgatgaatctggattcactgtggtgaattctgatttattct |
9573695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 11415560 - 11415588
Alignment:
| Q |
74 |
gatgaattctgattcattctaatgaatca |
102 |
Q |
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| T |
11415560 |
gatgaattctgattcattctaatgaatca |
11415588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 6076093 - 6076050
Alignment:
| Q |
159 |
cttttcttttgtcatttaattgatgacttagaatcttgaattatt |
203 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
6076093 |
cttttcttttgtcatttaatttatgactt-gaatcttgaattatt |
6076050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 30863957 - 30863913
Alignment:
| Q |
65 |
attcattaggatgaattctgattcattctaatgaatcattaccta |
109 |
Q |
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| T |
30863957 |
attcactatgatgaattgtgattcattctaatgaatcattaccta |
30863913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 12229614 - 12229585
Alignment:
| Q |
7 |
tgtatctattttgaacatgaatctcatctt |
36 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
12229614 |
tgtatctattttgaacatgaatctcatctt |
12229585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 10582380 - 10582320
Alignment:
| Q |
1 |
ctagtttgtatctattttgaacatgaatctcatcttaaatcatgatccactttgatgaatc |
61 |
Q |
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||||| |||||||||||||||||||||||||||||| | || |||| | || ||||||||| |
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| T |
10582380 |
ctagtgtgtatctattttgaacatgaatctcatcttgagtcctgattctctatgatgaatc |
10582320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 52750189 - 52750229
Alignment:
| Q |
135 |
ttgttaattttgtatgaccaatcacttttcttttgtcattt |
175 |
Q |
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|||| |||||||||| ||||| ||||||||||||||||||| |
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| T |
52750189 |
ttgtcaattttgtataaccaaccacttttcttttgtcattt |
52750229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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