View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14259_low_4 (Length: 529)

Name: NF14259_low_4
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14259_low_4
NF14259_low_4
[»] chr4 (46 HSPs)
chr4 (306-522)||(31568049-31568265)
chr4 (17-231)||(31567759-31567974)
chr4 (306-480)||(42430004-42430177)
chr4 (356-512)||(42414511-42414672)
chr4 (306-419)||(47310082-47310195)
chr4 (309-479)||(40436458-40436622)
chr4 (307-511)||(20580576-20580779)
chr4 (306-512)||(34276931-34277131)
chr4 (356-480)||(3756978-3757106)
chr4 (306-516)||(8738261-8738473)
chr4 (310-484)||(47996903-47997084)
chr4 (312-468)||(7611712-7611871)
chr4 (356-512)||(24575119-24575280)
chr4 (309-512)||(24319025-24319228)
chr4 (356-512)||(47498802-47498963)
chr4 (310-479)||(48315402-48315565)
chr4 (99-231)||(7612305-7612445)
chr4 (356-512)||(46251895-46252046)
chr4 (356-490)||(35205261-35205400)
chr4 (356-512)||(9279908-9280069)
chr4 (99-171)||(24319388-24319461)
chr4 (356-480)||(26161362-26161485)
chr4 (99-231)||(37602442-37602568)
chr4 (306-415)||(47462774-47462882)
chr4 (356-506)||(56078426-56078571)
chr4 (356-466)||(40336201-40336314)
chr4 (99-230)||(670477-670613)
chr4 (99-231)||(7611969-7612110)
chr4 (410-479)||(6184083-6184152)
chr4 (356-504)||(18780891-18781044)
chr4 (99-231)||(42430269-42430405)
chr4 (99-171)||(23695612-23695683)
chr4 (416-484)||(37602630-37602698)
chr4 (312-391)||(7612129-7612207)
chr4 (141-231)||(8738730-8738819)
chr4 (16-74)||(26161003-26161061)
chr4 (103-153)||(42414255-42414305)
chr4 (99-148)||(47975339-47975388)
chr4 (99-142)||(9280284-9280327)
chr4 (99-142)||(24574861-24574904)
chr4 (417-475)||(16519261-16519319)
chr4 (194-231)||(3757225-3757262)
chr4 (190-231)||(40436718-40436759)
chr4 (99-148)||(40436761-40436810)
chr4 (356-404)||(7700377-7700425)
chr4 (17-49)||(23695535-23695567)
[»] chr3 (17 HSPs)
chr3 (306-512)||(1030444-1030654)
chr3 (310-480)||(19997389-19997564)
chr3 (306-479)||(29283016-29283194)
chr3 (356-512)||(25706284-25706446)
chr3 (356-512)||(32055833-32055995)
chr3 (356-479)||(37282609-37282737)
chr3 (97-204)||(27166991-27167097)
chr3 (116-227)||(29283251-29283366)
chr3 (356-480)||(27167767-27167895)
chr3 (423-512)||(40166821-40166911)
chr3 (356-404)||(19636510-19636558)
chr3 (458-490)||(48085366-48085398)
chr3 (103-153)||(1030829-1030879)
chr3 (194-231)||(1030746-1030783)
chr3 (190-227)||(48082646-48082683)
chr3 (17-65)||(25393093-25393141)
chr3 (356-404)||(34597603-34597650)
[»] chr2 (20 HSPs)
chr2 (306-475)||(22596095-22596263)
chr2 (306-512)||(21352233-21352433)
chr2 (317-474)||(15441156-15441307)
chr2 (306-514)||(42295724-42295935)
chr2 (356-512)||(16671995-16672157)
chr2 (99-231)||(22596619-22596755)
chr2 (86-213)||(29772494-29772623)
chr2 (307-404)||(7418214-7418310)
chr2 (356-484)||(10997263-10997381)
chr2 (356-404)||(15486581-15486629)
chr2 (356-419)||(18511631-18511694)
chr2 (412-484)||(7753807-7753876)
chr2 (103-153)||(21352007-21352057)
chr2 (452-512)||(18511540-18511600)
chr2 (99-142)||(16672372-16672415)
chr2 (113-148)||(19968539-19968574)
chr2 (194-231)||(21352103-21352140)
chr2 (97-146)||(42295496-42295545)
chr2 (194-231)||(42295596-42295633)
chr2 (116-204)||(10997535-10997622)
[»] chr6 (19 HSPs)
chr6 (306-484)||(3901053-3901229)
chr6 (356-470)||(13531320-13531434)
chr6 (356-512)||(16705329-16705473)
chr6 (356-512)||(7608244-7608405)
chr6 (99-204)||(10386451-10386556)
chr6 (356-512)||(21946693-21946854)
chr6 (306-512)||(10484305-10484504)
chr6 (310-476)||(10386171-10386325)
chr6 (99-204)||(10484087-10484192)
chr6 (97-148)||(29174957-29175008)
chr6 (99-148)||(30395918-30395967)
chr6 (356-404)||(10517586-10517634)
chr6 (99-142)||(7607986-7608029)
chr6 (99-142)||(16705068-16705111)
chr6 (17-63)||(4463808-4463854)
chr6 (194-231)||(3900924-3900961)
chr6 (116-145)||(4463892-4463921)
chr6 (194-231)||(13531576-13531613)
chr6 (116-148)||(3900845-3900877)
[»] chr5 (29 HSPs)
chr5 (306-512)||(27110638-27110838)
chr5 (310-516)||(12291280-12291495)
chr5 (306-484)||(1495801-1495983)
chr5 (356-512)||(40987323-40987484)
chr5 (16-204)||(10416096-10416283)
chr5 (309-405)||(10415859-10415954)
chr5 (356-489)||(35449609-35449746)
chr5 (99-231)||(1495571-1495709)
chr5 (310-405)||(14718258-14718352)
chr5 (101-231)||(17342163-17342299)
chr5 (356-514)||(33160499-33160662)
chr5 (306-403)||(41061322-41061418)
chr5 (402-506)||(4986170-4986274)
chr5 (16-70)||(40044608-40044662)
chr5 (356-484)||(13521502-13521625)
chr5 (452-512)||(13554751-13554811)
chr5 (408-480)||(41061218-41061290)
chr5 (99-228)||(33745945-33746074)
chr5 (310-473)||(33746156-33746312)
chr5 (195-231)||(4986410-4986446)
chr5 (447-479)||(17035102-17035134)
chr5 (358-409)||(29501330-29501381)
chr5 (99-142)||(40987699-40987742)
chr5 (99-204)||(40044475-40044579)
chr5 (97-142)||(13555129-13555174)
chr5 (190-231)||(31755795-31755836)
chr5 (97-158)||(33996074-33996134)
chr5 (417-514)||(42716146-42716243)
chr5 (195-231)||(12291148-12291184)
[»] chr1 (24 HSPs)
chr1 (356-512)||(24614726-24614887)
chr1 (307-480)||(33719516-33719683)
chr1 (356-484)||(41198474-41198602)
chr1 (306-480)||(31091979-31092152)
chr1 (306-512)||(28655563-28655762)
chr1 (97-231)||(33719284-33719421)
chr1 (356-512)||(5559376-5559527)
chr1 (306-513)||(35672015-35672221)
chr1 (355-513)||(16902554-16902712)
chr1 (16-231)||(28655840-28656068)
chr1 (17-145)||(41198114-41198247)
chr1 (413-512)||(24063938-24064037)
chr1 (306-400)||(7785466-7785558)
chr1 (116-230)||(38856064-38856180)
chr1 (356-512)||(14461699-14461845)
chr1 (17-231)||(24615059-24615272)
chr1 (417-512)||(50550958-50551053)
chr1 (99-152)||(35671801-35671854)
chr1 (97-204)||(31088606-31088712)
chr1 (452-504)||(41074894-41074946)
chr1 (155-230)||(790311-790391)
chr1 (100-142)||(14462061-14462103)
chr1 (19-72)||(11619628-11619681)
chr1 (307-400)||(46010961-46011053)
[»] chr8 (35 HSPs)
chr8 (356-512)||(4267328-4267489)
chr8 (356-512)||(31127223-31127374)
chr8 (306-512)||(3773804-3774008)
chr8 (356-512)||(6345288-6345439)
chr8 (356-512)||(37948907-37949058)
chr8 (306-516)||(42199990-42200195)
chr8 (307-512)||(43619953-43620162)
chr8 (356-480)||(3106198-3106317)
chr8 (309-484)||(27808893-27809056)
chr8 (355-484)||(34191076-34191205)
chr8 (356-479)||(1265121-1265249)
chr8 (306-393)||(3289827-3289913)
chr8 (319-513)||(10183160-10183358)
chr8 (356-512)||(26721120-26721281)
chr8 (97-153)||(10182912-10182968)
chr8 (356-519)||(15265930-15266086)
chr8 (356-482)||(4602609-4602740)
chr8 (18-158)||(253224-253369)
chr8 (18-158)||(662489-662634)
chr8 (18-158)||(848287-848432)
chr8 (306-492)||(12523123-12523313)
chr8 (356-512)||(32906886-32907052)
chr8 (435-512)||(26721314-26721391)
chr8 (99-193)||(12522896-12522989)
chr8 (442-512)||(13470847-13470917)
chr8 (178-231)||(3290008-3290061)
chr8 (99-142)||(1265465-1265508)
chr8 (99-142)||(6345656-6345699)
chr8 (99-142)||(26720861-26720904)
chr8 (99-142)||(31126964-31127007)
chr8 (99-142)||(37948648-37948691)
chr8 (99-142)||(43619743-43619786)
chr8 (17-51)||(27805015-27805049)
chr8 (194-231)||(3774101-3774138)
chr8 (194-231)||(4267631-4267668)
[»] chr7 (22 HSPs)
chr7 (309-480)||(8937705-8937879)
chr7 (307-512)||(6714125-6714334)
chr7 (306-480)||(31280095-31280263)
chr7 (356-512)||(27392574-27392725)
chr7 (356-512)||(1575826-1575987)
chr7 (306-512)||(29987909-29988104)
chr7 (356-512)||(323567-323728)
chr7 (99-231)||(31279867-31280002)
chr7 (356-516)||(28694667-28694822)
chr7 (306-480)||(36582438-36582604)
chr7 (99-153)||(8080872-8080926)
chr7 (356-512)||(36482602-36482748)
chr7 (389-474)||(40303675-40303755)
chr7 (356-419)||(10286488-10286551)
chr7 (99-231)||(8937468-8937610)
chr7 (135-230)||(27856691-27856788)
chr7 (99-231)||(36582209-36582345)
chr7 (452-512)||(10286397-10286457)
chr7 (99-142)||(1576203-1576246)
chr7 (99-142)||(27392944-27392987)
chr7 (99-153)||(29987691-29987745)
chr7 (17-49)||(8937381-8937413)
[»] scaffold0717 (2 HSPs)
scaffold0717 (307-511)||(5474-5677)
scaffold0717 (116-153)||(5854-5891)
[»] scaffold0140 (1 HSPs)
scaffold0140 (352-505)||(15480-15628)
[»] scaffold0396 (2 HSPs)
scaffold0396 (356-479)||(1228-1356)
scaffold0396 (99-204)||(969-1074)
[»] scaffold0034 (1 HSPs)
scaffold0034 (416-484)||(47783-47851)
[»] scaffold0043 (1 HSPs)
scaffold0043 (356-420)||(16251-16315)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 306 - 522
Target Start/End: Original strand, 31568049 - 31568265
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31568049 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 31568148  T
Q  406 aattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttg 505  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||||    
T  31568149 aattcggtttggttttgaaaaaatgatatgaaatccgatccggtcttagcggtttttacaaaacaacatccaaccacatcttaaaatttccaattttttg 31568248  T
Q  506 cggtttttgatattctt 522  Q
    ||||||||||| |||||    
T  31568249 cggtttttgattttctt 31568265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 31567759 - 31567974
Alignment:
Q  17 aaaatgtcatccgatccaaaataaaaattacatgcaattcagtttggatgactattctnnnnnnnttcgaactaatctgtttcaaatatatgagatttta 116  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |       | ||||| |||||| |  ||||||||| | |||||    
T  31567759 aaaatgtcatccgatccaaaataaaaattacatgcgattcagtttgggtgactattttaaaaaaatccgaaccaatctgatctaaatatatgcggtttta 31567858  T
Q  117 tttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttacttctttcaaagaatataatatttttattaa-tattacacaaacaccg 215  Q
    |||||||||||||||||||||||||||| ||||||||||||  |||||||||||| |||| |||||||||||||||||||||| |||||||||||||  |    
T  31567859 tttggatcggtttttggatatccaaaatacaaaatatgtatatttttatttacttttttcgaagaatataatatttttattaattattacacaaacatgg 31567958  T
Q  216 taaaataataggtttg 231  Q
    ||||||||||||||||    
T  31567959 taaaataataggtttg 31567974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 306 - 480
Target Start/End: Complemental strand, 42430177 - 42430004
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| ||||||||||   ||| |||||| ||| ||| || |||| |||| ||||||||||| |||||||||||||||||||| ||||||| |||    
T  42430177 gtgcaatatataagattaaaatttaacaagcaacataataatgcaatata-taatgctaataaaagaataaataagtattaatatttatttttgcgtttc 42430079  T
Q  406 aattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaac 480  Q
      || ||||||||||||||||| ||||  |||||  |||||||||| ||||||||||||||||||||||||||||    
T  42430078 ggtttggtttggttttgaaaaagtgatccgaaattcgatccgatctgagcggtttttacaaaacaacatccaaac 42430004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 356 - 512
Target Start/End: Original strand, 42414511 - 42414672
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggtt-----ttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||  ||||||||||||     |||||||| ||||   ||||| |||||||||    
T  42414511 ataatactaataaaagaataaataagtattaatatttatttttgcggttcggttcggtttggttcggttttgaaaaagtgatccaaaatccgatccgatc 42414610  T
Q  451 ttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    |||||||||||||||||||||||||||||| |||  ||| || | || ||||||||||||||    
T  42414611 ttagcggtttttacaaaacaacatccaaacgcatccaaatatattcggttttttgcggtttt 42414672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 306 - 419
Target Start/End: Complemental strand, 47310195 - 47310082
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||| |||||||||||||||||||| |||||| |||||||| | |||||||||||||| |||||| ||||||||||||||||||||||||||| |||     
T  47310195 gtgcaacatagaagattaaaaaccaacaagcaacataacaatttaatataataatactaagaaaagaataaataagtattaatatttacttttgcagttt 47310096  T
Q  406 aattcggtttggtt 419  Q
     |||||||||||||    
T  47310095 gattcggtttggtt 47310082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 309 - 479
Target Start/End: Complemental strand, 40436622 - 40436458
Alignment:
Q  309 caatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttcaat 408  Q
    ||||||| |||||||||||||||| |||||| ||| ||| || |||| |||||||||||||||| ||||||| |||||||||||||||||||||     |    
T  40436622 caatatataagattaaaaaccaacaagcaacataataatgcaatata-taatactaataaaagaataaataaatattaatatttacttttgcgg-----t 40436529  T
Q  409 tcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaa 479  Q
    ||||||||||||||||||| ||||  ||| || |||| |||| || |  ||||||||||||||||||||||    
T  40436528 tcggtttggttttgaaaaagtgatccgaagtccgatctgatcgtaacaatttttacaaaacaacatccaaa 40436458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 307 - 511
Target Start/End: Complemental strand, 20580779 - 20580576
Alignment:
Q  307 tgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttca 406  Q
    ||||||||| ||||||||||   ||| |||||| ||| ||| || |||| |||||||||||||||| ||||||||||||||||||| ||||||  ||||     
T  20580779 tgcaatatataagattaaaagttaacaagcaacataataatgcaatata-taatactaataaaagaataaataagtattaatatttgcttttgttgttcg 20580681  T
Q  407 attcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgc 506  Q
     || ||||||||||||||||| |||| ||||||| ||||||||| ||||  || |||||||||||||| ||| | |||  |||||| |  | ||||||||    
T  20580680 gtttggtttggttttgaaaaagtgatctgaaatccgatccgatcctagcaattcttacaaaacaacattcaagcgcatccaaaaatatttggttttttgc 20580581  T
Q  507 ggttt 511  Q
    |||||    
T  20580580 ggttt 20580576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 306 - 512
Target Start/End: Complemental strand, 34277131 - 34276931
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| ||||||||||   ||| | |||| ||| ||| || |||| |||||||||||||||| |||||||||||||||||||| ||||||||       
T  34277131 gtgcaatatataagattaaaatttaacaaacaacataataatgcaatata-taatactaataaaagaataaataagtattaatatttatttttgcgg--- 34277036  T
Q  406 aattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttg 505  Q
      ||||||| | |||||||||| ||||    |||  ||||||||||||||||||||||||||||||||||||||| |||  ||| || | || |||||||    
T  34277035 --ttcggttcgattttgaaaaagtgatccagaattcgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaatatattcggttttttg 34276938  T
Q  506 cggtttt 512  Q
    |||||||    
T  34276937 cggtttt 34276931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 356 - 480
Target Start/End: Complemental strand, 3757106 - 3756978
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggtt-----ttgaaaaaatgatatgaaatctgatccgatc 450  Q
    |||||||||||||||||  |||||||||||||||| || ||||||||||| |||||||||||||     |||||||| ||||  |||||| |||||||||    
T  3757106 ataatactaataaaagaa-aaataagtattaatatctatttttgcggttcgattcggtttggttcggttttgaaaaagtgatccgaaatccgatccgatc 3757008  T
Q  451 ttagcggtttttacaaaacaacatccaaac 480  Q
    ||| ||||||||| |||||||||| |||||    
T  3757007 ttaacggtttttaaaaaacaacattcaaac 3756978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 306 - 516
Target Start/End: Complemental strand, 8738473 - 8738261
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| |||||| ||| | ||| |||||| ||| ||| || |||| |||||||||||||||| ||||||||||||||||||||| ||||  ||||    
T  8738473 gtgcaatatataagattgaaa-caaacaagcaacataataatgcaatata-taatactaataaaagaataaataagtattaatatttacatttgtagttc 8738376  T
Q  406 aattcggtt----tggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattt 501  Q
    | || | ||    ||||||||| ||| || |  |||||||| ||||||  ||||| ||||||||||||||||||||||  |||  |||||| | | ||||    
T  8738375 agttggtttggcttggttttgagaaagtgttccgaaatctgctccgatactagcgatttttacaaaacaacatccaaatgcatcaaaaaatattcaattt 8738276  T
Q  502 tttgcggtttttgat 516  Q
    |||||||||||||||    
T  8738275 tttgcggtttttgat 8738261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 484
Target Start/End: Original strand, 47996903 - 47997084
Alignment:
Q  310 aatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttcaatt 409  Q
    |||||| |||||||||||||||| |||||| ||| ||| || |||| ||||||| || ||| |  ||||||||||||||||||||||| |||||||  ||    
T  47996903 aatatataagattaaaaaccaacaagcaacataataatgcaatata-taatacttattaaaaa--aaataagtattaatatttactttcgcggttcggtt 47996999  T
Q  410 cggtt----------tggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacat 484  Q
    |||||          ||| ||||||||||||||  |||||| ||||||||| ||||||||||||||||||||||| ||| |||||    
T  47997000 cggttcgtttagctttggatttgaaaaaatgatccgaaatccgatccgatcctagcggtttttacaaaacaacattcaagcacat 47997084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 312 - 468
Target Start/End: Complemental strand, 7611871 - 7611712
Alignment:
Q  312 tatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc-----a 406  Q
    |||| ||| |||||||||||| |||||| ||| |||||| |||| |||||  | |||||||||||||||||||||||||| |||||| | ||||     |    
T  7611871 tatataagtttaaaaaccaacaagcaacataaaaattcaatata-taatatcattaaaagagtaaataagtattaatatt-acttttacagttcggttta 7611774  T
Q  407 attcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaa 468  Q
     || |||| |||||||| |||||||| |||||||||||| |||| |||||||||||||||||    
T  7611773 gtttggttcggttttgagaaaatgatctgaaatctgatctgatcctagcggtttttacaaaa 7611712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 356 - 512
Target Start/End: Original strand, 24575119 - 24575280
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaatt-----cggtttggttttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||| | ||||||||||| || |||||||||||||||||  ||     ||||| |||||||||||    ||  |||||| |||||||||    
T  24575119 ataatactaataaaataataaataagtataaaaatttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatc 24575218  T
Q  451 ttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
     ||||||||||| |||||||||||||||||||||  |||||| | || ||||||||| ||||    
T  24575219 atagcggtttttccaaaacaacatccaaacacatccaaaaatattcggttttttgcgatttt 24575280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 309 - 512
Target Start/End: Complemental strand, 24319228 - 24319025
Alignment:
Q  309 caatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttac-ttttgcggttcaa 407  Q
    ||||||| |||||||||||||||| |||||| |||  ||  | | || |||||||||||||||| ||||||||||||||||||||| ||||| |||||      
T  24319228 caatatataagattaaaaaccaacaagcaacataattataaaatcta-taatactaataaaagaataaataagtattaatatttactttttgtggttcgg 24319130  T
Q  408 ttcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcg 507  Q
    || |||| |||||||| ||| ||||   ||||   | |||||| || ||||||| | |||||||||||||||| |||  |||||| | |||||||||| |    
T  24319129 tttggttcggttttgagaaagtgatccaaaattcaaaccgatcctaacggttttgataaaacaacatccaaacgcatccaaaaatattcgattttttgtg 24319030  T
Q  508 gtttt 512  Q
    |||||    
T  24319029 gtttt 24319025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 356 - 512
Target Start/End: Original strand, 47498802 - 47498963
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggtt-----ttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||| | |||||||| ||||| || ||||||||||||||  ||||||| ||||     || ||||  ||||  |||||| || || |||    
T  47498802 ataatactaataaaataataaataagaattaaaatctacttttgcggttcggttcggttcggttcggttttaaaaaggtgatccgaaatccgaaccaatc 47498901  T
Q  451 ttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
     ||||||||||| |||||||||||||||||||||  |||||| | || ||||||||||||||    
T  47498902 atagcggtttttccaaaacaacatccaaacacatccaaaaatattcggttttttgcggtttt 47498963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 479
Target Start/End: Original strand, 48315402 - 48315565
Alignment:
Q  310 aatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttcaatt 409  Q
    |||||| |||| ||||||||||| |||||| ||| ||| || |||| |||||||||||||||| ||||||| |||||||| |||||||||| |||||       
T  48315402 aatatataagaataaaaaccaacaagcaacataataatgcaatata-taatactaataaaagaataaataaatattaatagttacttttgcagttca--- 48315497  T
Q  410 cggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaa 479  Q
      |||| |||| || ||| |||  ||||||| ||||  ||| |||||||||||| | |||||||||||||    
T  48315498 --gtttagtttagagaaagtgacctgaaatccgatctaatcctagcggtttttatagaacaacatccaaa 48315565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 99 - 231
Target Start/End: Complemental strand, 7612445 - 7612305
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttacttctttcaaaga---atataatattttta 195  Q
    ||||||||||   ||| ||||||||| ||||||||||||||||||||||||| || | || |||||||||||| ||||||| |   ||||||| ||||||    
T  7612445 caaatatatgcagtttaatttggatcagtttttggatatccaaaatgcaaaa-atatttttttttatttacttttttcaaaaaaatatataattttttta 7612347  T
Q  196 tta------atattacacaaacaccgtaaaataataggtttg 231  Q
    |||      ||||||||||||||| |||||||||||||||||    
T  7612346 ttaatattcatattacacaaacactgtaaaataataggtttg 7612305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 356 - 512
Target Start/End: Original strand, 46251895 - 46252046
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagc 455  Q
    ||||||||||||||| | |||||||| ||||| || ||||||||||||||     |||| |||||||||||  ||||  |||||| || || ||| ||||    
T  46251895 ataatactaataaaataataaataagaattaaaatctacttttgcggttc-----ggttcggttttgaaaaggtgatccgaaatccgaaccaatcatagc 46251989  T
Q  456 ggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    || |||| |||||||||||||||||||||  |||||| | || |||||||| |||||    
T  46251990 ggcttttccaaaacaacatccaaacacatccaaaaatattcggttttttgcagtttt 46252046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 356 - 490
Target Start/End: Original strand, 35205261 - 35205400
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttg-----gttttgaaaaaatgatatgaaatctgatccgatc 450  Q
    |||||| | |||||||| |||||||||| ||| ||||||||||| |||||| || ||||||     ||||| ||||||||||   | ||||||||| ||     
T  35205261 ataataattataaaagaataaataagtaataaaatttacttttgtggttcactttggtttgattcggttttaaaaaaatgatccaagatctgatccaatt 35205360  T
Q  451 ttagcggtttttacaaaacaacatccaaacacatttaaaa 490  Q
    |||| ||||||||||||||||||||||||| ||| |||||    
T  35205361 ttagtggtttttacaaaacaacatccaaacgcatctaaaa 35205400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 356 - 512
Target Start/End: Complemental strand, 9280069 - 9279908
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaatt-----cggtttggttttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||| | ||||||||||| || ||||||||||||||||   ||     ||||| |||||||||||    ||  |||||| |||||||||    
T  9280069 ataatactaataaaataataaataagtataaaaatttacttttgcggttaggttaggttcggttcggttttgaaaacgcaatccgaaatccgatccgatc 9279970  T
Q  451 ttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
     ||||||||||| |||||||||||||||||| ||  |||||| | || ||||||||| ||||    
T  9279969 atagcggtttttccaaaacaacatccaaacaaatccaaaaatattcggttttttgcgatttt 9279908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 24319461 - 24319388
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtat-tcttttatttactt 171  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||    
T  24319461 caaatatatgcggtttaatttggatcggtttttggatatccaaaatgcaaaatatatatattttttatttactt 24319388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 356 - 480
Target Start/End: Original strand, 26161362 - 26161485
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagc 455  Q
    ||||||||||||||| | |||||||||||||||||||| ||||  |||||| || ||||| ||||| ||||| |||   ||||||  ||| ||||||||     
T  26161362 ataatactaataaaataataaataagtattaatatttatttttctggttcagtttggtttagttttcaaaaagtgaaccgaaatccaatcggatcttag- 26161460  T
Q  456 ggtttttacaaaacaacatccaaac 480  Q
     |||||||||||||||||| |||||    
T  26161461 tgtttttacaaaacaacattcaaac 26161485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 37602442 - 37602568
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttacttctttcaaagaatataatatttttatta 198  Q
    |||||||||| | ||| ||||||| |||||||||||||||||||||  ||||||  || | |||||||||||| |||  || |||   || |||||||||    
T  37602442 caaatatatgtggtttaatttggaccggtttttggatatccaaaatataaaata--taattttttatttactttttttgaaaaat---atttttttatta 37602536  T
Q  199 atattacacaaacaccgtaaaataataggtttg 231  Q
    |||||||||||||| ||| ||||||||||||||    
T  37602537 atattacacaaaca-cgttaaataataggtttg 37602568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 415
Target Start/End: Original strand, 47462774 - 47462882
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| ||||||||||| |||| |||||| ||| || ||| |||| |||||||  ||||||| |||  ||||||||||||||| |||||||||||    
T  47462774 gtgcaatatataagattaaaaatcaacaagcaacataaaaaatcaatata-taatactcttaaaagaataagcaagtattaatatttatttttgcggttc 47462872  T
Q  406 aattcggttt 415  Q
    | || |||||    
T  47462873 attttggttt 47462882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 506
Target Start/End: Complemental strand, 56078571 - 56078426
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagc 455  Q
    |||||||||||||||   |||||||||||||| ||||||||||| ||||   ||  ||| |||||||||||| |||| ||||||| |||||||||  | |    
T  56078571 ataatactaataaaatgataaataagtattaaaatttacttttgtggtt---tt--gttcggttttgaaaaagtgatttgaaatccgatccgatcacaac 56078477  T
Q  456 ggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgc 506  Q
      ||||||| ||||||||||||||| |||   ||||| | |||||||||||    
T  56078476 aatttttactaaacaacatccaaacgcatccgaaaatattcgattttttgc 56078426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 466
Target Start/End: Original strand, 40336201 - 40336314
Alignment:
Q  356 ataatactaataaaagagtaaataagtat---taatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatctt 452  Q
    ||||||| ||||||||| |||||||||||   |||||||||||||||| ||||  ||  ||||| |||||| ||| |||||| |||| |||||||||| |    
T  40336201 ataatacaaataaaagaataaataagtataaataatatttacttttgcagttcggtttagtttgattttgagaaagtgatataaaatttgatccgatcct 40336300  T
Q  453 agcggtttttacaa 466  Q
    |||  |||||||||    
T  40336301 agcaatttttacaa 40336314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 230
Target Start/End: Original strand, 670477 - 670613
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttacttctttcaaagaatataatatttt----- 193  Q
    |||||||||  | ||| |||||||||| |||||||||||||||||||||||| |  ||     |||||||||| |||  ||||||||||||||||         
T  670477 caaatatatacggtttaatttggatcgatttttggatatccaaaatgcaaaa-aaataaaaaattatttacttttttttaagaatataatatttttatta 670575  T
Q  194 -tattaatattacacaaacaccgtaaaataataggttt 230  Q
     ||||||||||||| |||||| ||||||||||||||||    
T  670576 atattaatattacataaacacagtaaaataataggttt 670613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 231
Target Start/End: Complemental strand, 7612110 - 7611969
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttacttctttcaaaga---atataatatttt-- 193  Q
    ||||||||||   ||| ||||||||| ||||||||||||| ||||||||||| || | || |||||||||||| ||||||| |   ||||||| ||||      
T  7612110 caaatatatgcagtttaatttggatcagtttttggatatcgaaaatgcaaaa-atatttttttttatttacttttttcaaaaaaatatataatttttttt 7612012  T
Q  194 -----tattaatattacacaaacaccgtaaaataataggtttg 231  Q
         |||| ||||||||||||||| |||||||||||||||||    
T  7612011 attaatattcatattacacaaacactgtaaaataataggtttg 7611969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 479
Target Start/End: Original strand, 6184083 - 6184152
Alignment:
Q  410 cggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaa 479  Q
    |||||| ||||||||||| ||||  |||||| ||||||||| || || ||||||||||||||||||||||    
T  6184083 cggtttagttttgaaaaagtgatccgaaatccgatccgatcctaacgatttttacaaaacaacatccaaa 6184152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 504
Target Start/End: Original strand, 18780891 - 18781044
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcg-----gttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||| | ||||||||||| || |||||||||||||     ||| | |||| |||  |||||||||  | ||  ||||||||||| ||||    
T  18780891 ataatactaataaaataataaataagtataaaaatttacttttgcggtttagtttagttcgattttattttgaaaacgtaattcgaaatctgatctgatc 18780990  T
Q  451 ttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgatttttt 504  Q
     || |||||||| |||||||| || |||||||||  |||||| | |||||||||    
T  18780991 ataacggtttttccaaaacaaaattcaaacacatccaaaaatattcgatttttt 18781044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 231
Target Start/End: Complemental strand, 42430405 - 42430269
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttact-tctttcaaagaatataa------tatt 191  Q
    |||||||||| | ||| |||||||||| |||||||| ||||| |||||||||||  |||| ||||||||||| | |||  ||||||||||      ||||    
T  42430405 caaatatatgcggtttaatttggatcgatttttggacatccagaatgcaaaata--tatt-ttttatttactcttttttgaagaatataaattttttatt 42430309  T
Q  192 tttattaatattacacaaacaccgtaaaataataggtttg 231  Q
      |||||||||||||||||||| ||||||||||| |||||    
T  42430308 aatattaatattacacaaacacggtaaaataatatgtttg 42430269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 23695612 - 23695683
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttactt 171  Q
    |||||||||| | ||| ||||||||||||||||||||||| | | |||||||||| |||| ||||||||||||    
T  23695612 caaatatatgcggtttaatttggatcggtttttggatatctagattgcaaaatatatatt-ttttatttactt 23695683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 484
Target Start/End: Original strand, 37602630 - 37602698
Alignment:
Q  416 ggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacat 484  Q
    |||||||| ||| |||| ||||||| ||||||||| |||| |||||||||||| ||||| |||||||||    
T  37602630 ggttttgagaaagtgatttgaaatcagatccgatcctagcagtttttacaaaagaacattcaaacacat 37602698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 312 - 391
Target Start/End: Complemental strand, 7612207 - 7612129
Alignment:
Q  312 tatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatt 391  Q
    |||| ||| |||||||||||| |||||| ||| |||||| |||| |||||  | ||||||||||||||||||||||||||    
T  7612207 tatataagtttaaaaaccaacaagcaacataaaaattcaatata-taatatcattaaaagagtaaataagtattaatatt 7612129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 8738819 - 8738730
Alignment:
Q  141 aaatgcaaaatatgtattcttttatttacttctttcaaagaatataatatttttattaatattacacaaacaccgtaaaataataggtttg 231  Q
    ||||||||||||| ||||  ||||||||||| |||  ||||||||||| |||||||| |||| | | ||||||  ||||||||||||||||    
T  8738819 aaatgcaaaatatatatttatttatttactttttttgaagaatataatttttttattgatatca-ataaacacgataaaataataggtttg 8738730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 26161003 - 26161061
Alignment:
Q  16 caaaatgtcatccgatccaaaataaaaattacatgcaattcagtttggatgactattct 74  Q
    |||||||||||| |||||||||||||||| |||||| | | ||||||||||| ||||||    
T  26161003 caaaatgtcatctgatccaaaataaaaataacatgcgaattagtttggatgagtattct 26161061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 42414255 - 42414305
Alignment:
Q  103 tatatgagattttatttggatcggtttttggatatccaaaatgcaaaatat 153  Q
    |||||| | ||| |||||||||||||||||||| |||||||||||||||||    
T  42414255 tatatgcggtttaatttggatcggtttttggatgtccaaaatgcaaaatat 42414305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 47975339 - 47975388
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaa 148  Q
    |||||||||| | ||| ||||||||||||||||||| |||||||||||||    
T  47975339 caaatatatgcggtttgatttggatcggtttttggacatccaaaatgcaa 47975388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 9280327 - 9280284
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaa 142  Q
    |||||||||| | ||| |||||||||||||||||||||||||||    
T  9280327 caaatatatgcggtttaatttggatcggtttttggatatccaaa 9280284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 24574861 - 24574904
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaa 142  Q
    |||||||||| | ||| |||||||||||||||||||||||||||    
T  24574861 caaatatatgcggtttaatttggatcggtttttggatatccaaa 24574904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 475
Target Start/End: Complemental strand, 16519319 - 16519261
Alignment:
Q  417 gttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatc 475  Q
    ||||||| ||| |||||||||| || |||||||| || ||||||||| |||||||||||    
T  16519319 gttttgagaaagtgatatgaaacctaatccgatcctatcggtttttataaaacaacatc 16519261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 3757262 - 3757225
Alignment:
Q  194 tattaatattacacaaacaccgtaaaataataggtttg 231  Q
    |||||||||||||||||||  |||||||||||||||||    
T  3757262 tattaatattacacaaacagggtaaaataataggtttg 3757225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 40436759 - 40436718
Alignment:
Q  190 tttttattaatattacacaaacaccgtaaaataataggtttg 231  Q
    ||||| |||||||||||||||||| ||||||||||| |||||    
T  40436759 ttttttttaatattacacaaacacggtaaaataataagtttg 40436718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 40436810 - 40436761
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaa 148  Q
    |||||||||| ||||| |||| | || |||||||||||||||||||||||    
T  40436810 caaatatatgcgatttaatttagttcagtttttggatatccaaaatgcaa 40436761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 7700425 - 7700377
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggtt 404  Q
    ||||||||||||||| | ||||||||||| || ||||||||||| ||||    
T  7700425 ataatactaataaaataataaataagtataaaaatttacttttgtggtt 7700377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 23695535 - 23695567
Alignment:
Q  17 aaaatgtcatccgatccaaaataaaaattacat 49  Q
    |||||||||||||||||||||||||||| ||||    
T  23695535 aaaatgtcatccgatccaaaataaaaatcacat 23695567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 306 - 512
Target Start/End: Complemental strand, 1030654 - 1030444
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| ||||||||||   ||| | |||| ||| ||| || |||| |||||||||||||||| |||||||||||||||||||| |||||||||||    
T  1030654 gtgcaatatataagattaaaatttaacaaacaacataataatgcaatata-taatactaataaaagaataaataagtattaatatttatttttgcggttc 1030556  T
Q  406 aattcggtttggtt-----ttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgatt 500  Q
    | ||||||||||||     | |||||| ||||   ||||| ||||||||||||||||||||||||||||||||||||||| |||  ||| || | || ||    
T  1030555 agttcggtttggttcggtttcgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaatatattcggtt 1030456  T
Q  501 ttttgcggtttt 512  Q
    ||||||||||||    
T  1030455 ttttgcggtttt 1030444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 310 - 480
Target Start/End: Complemental strand, 19997564 - 19997389
Alignment:
Q  310 aatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttcaatt 409  Q
    |||||| |||||||||||  ||| |||||| ||| ||| || |||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||    
T  19997564 aatatataagattaaaaattaacaagcaacataataatgcattata-taatactaataagagaataaataaatattaatatttacttttgcggttcagtt 19997466  T
Q  410 cggtttggtt-----ttgaaaaaatgatatgaaa-tctgatccgatcttagcggtttttacaaaacaacatccaaac 480  Q
    ||||||||||     |||||||| ||||  |||| || |||||||||||||| |||||||| | |||||||| ||||    
T  19997465 cggtttggttcggttttgaaaaagtgatccgaaaatccgatccgatcttagcagtttttacgagacaacatctaaac 19997389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 306 - 479
Target Start/End: Complemental strand, 29283194 - 29283016
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataata-----atactaataaaagagtaaataagtattaatatttacttttgc 400  Q
    |||||||||| |||||||||||||||| |||||| ||| ||| || ||| |||     |||||||||||||| |||||||||||||||||||||||||||    
T  29283194 gtgcaatatataagattaaaaaccaacaagcaacataataatgcaatattatatatatatactaataaaagaataaataagtattaatatttacttttgc 29283095  T
Q  401 ggttcaattcggtttgg-----ttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaa 479  Q
    |||||  ||||||| ||     |||||| ||| ||||  |||     ||||| || ||||||||||||||||||||||||||||    
T  29283094 ggttcggttcggttcggttcaattttgagaaagtgatccgaa-----atccgttcctagcggtttttacaaaacaacatccaaa 29283016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 356 - 512
Target Start/End: Complemental strand, 25706446 - 25706284
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggtt-----ttgaaaaaatgatatgaaatctgatccgatc 450  Q
    |||||| |||||||| | |||||||| ||||| || ||||||||||||||  ||||||||||||     |||||||  | || |||| || || ||||||    
T  25706446 ataatattaataaaataataaataagaattaaaatctacttttgcggttcggttcggtttggttcggttttgaaaaggttatctgaagtccgaaccgatc 25706347  T
Q  451 ttagcggttttta-caaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
     |||||||||||  |||||||||||||||||||||  |||||| | |||||||||||||||||    
T  25706346 atagcggtttttttcaaaacaacatccaaacacatccaaaaatattcgattttttgcggtttt 25706284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 512
Target Start/End: Original strand, 32055833 - 32055995
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggtt-----ttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||| | |||||||| ||||| || ||||||||||||||  |||| |||||||     |||||||  ||||  |||||| || || |||    
T  32055833 ataatactaataaaataataaataagaattaaaatctacttttgcggttcggttcgatttggttcggttttgaaaatgtgatccgaaatccgaaccaatc 32055932  T
Q  451 ttagcggtttttacaaaacaacatccaaacacatttaaaaat-ttccgattttttgcggtttt 512  Q
     ||||||||||  |||||||||||||||||||||  |||||| ||| | ||||||||||||||    
T  32055933 atagcggttttgccaaaacaacatccaaacacatccaaaaatattcggtttttttgcggtttt 32055995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 356 - 479
Target Start/End: Original strand, 37282609 - 37282737
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttc-----aattcggtttggttttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||| | ||||||||||| || |||||||||||||||||       ||||||| |||||||||||    ||  |||||| |||||||||    
T  37282609 ataatactaataaaataataaataagtataaaaatttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatc 37282708  T
Q  451 ttagcggtttttacaaaacaacatccaaa 479  Q
     ||||||||||| ||||||||||||||||    
T  37282709 atagcggtttttccaaaacaacatccaaa 37282737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 27166991 - 27167097
Alignment:
Q  97 ttcaaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttacttctttcaaagaatataatatttttat 196  Q
    |||||||||||| | ||| ||||||||||||||| |  |||| |||||||||||| | |||  |||||||||||| |||  |||||||| ||||||||||    
T  27166991 ttcaaatatatgcggtttaatttggatcggttttcgagtatctaaaatgcaaaatgtatatgtttttatttactttttttgaagaatat-atatttttat 27167089  T
Q  197 taatatta 204  Q
    ||||||||    
T  27167090 taatatta 27167097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 29283366 - 29283251
Alignment:
Q  116 atttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttacttctttcaaagaatataatattttta------ttaatattacacaa 209  Q
    |||||||||||||||||||||||||||||| |||| || | || |||||||||||| |||  | ||||||||| ||||||      ||||||||||||||    
T  29283366 atttggatcggtttttggatatccaaaatgaaaaaaatat-tttttttatttactt-tttttacgaatataatttttttataaattttaatattacacaa 29283269  T
Q  210 acaccgtaaaataatagg 227  Q
    |||| |||||||||||||    
T  29283268 acacggtaaaataatagg 29283251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 480
Target Start/End: Original strand, 27167767 - 27167895
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttg-----gttttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||||||||| ||| ||||||      |||| ||||| |||| ||||||| |||  || |    
T  27167767 ataatactaataaaagaataaatcagtattaataattacttttgcggttcgatttggtttgattcaattttaaaaaagtgatctgaaatccgatatga-c 27167865  T
Q  451 ttagcggtttttacaaaacaacatccaaac 480  Q
     ||||||||||||||||||| ||| |||||    
T  27167866 ctagcggtttttacaaaacagcattcaaac 27167895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 423 - 512
Target Start/End: Original strand, 40166821 - 40166911
Alignment:
Q  423 aaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaat-ttccgattttttgcggtttt 512  Q
    ||||||||||  || ||| ||||  ||||||||||||||||||||||||||| ||||||||| |||| || ||| | ||||||||||||||    
T  40166821 aaaaaatgatccgatatccgatcgaatcttagcggtttttacaaaacaacattcaaacacatctaaatatattcggtttttttgcggtttt 40166911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 19636510 - 19636558
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggtt 404  Q
    ||||||||||||||| | ||||||||||| || ||||||||||||||||    
T  19636510 ataatactaataaaataataaataagtataaaaatttacttttgcggtt 19636558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 490
Target Start/End: Original strand, 48085366 - 48085398
Alignment:
Q  458 tttttacaaaacaacatccaaacacatttaaaa 490  Q
    |||||||||||||||||||||||||||||||||    
T  48085366 tttttacaaaacaacatccaaacacatttaaaa 48085398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 1030879 - 1030829
Alignment:
Q  103 tatatgagattttatttggatcggtttttggatatccaaaatgcaaaatat 153  Q
    |||||| | ||| |||||||||| ||||||||| |||||||||||||||||    
T  1030879 tatatgcggtttaatttggatcgatttttggatgtccaaaatgcaaaatat 1030829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 1030783 - 1030746
Alignment:
Q  194 tattaatattacacaaacaccgtaaaataataggtttg 231  Q
    |||||||||||||||||||  |||||||||||||||||    
T  1030783 tattaatattacacaaacagggtaaaataataggtttg 1030746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 48082646 - 48082683
Alignment:
Q  190 tttttattaatattacacaaacaccgtaaaataatagg 227  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  48082646 tttttattaatattacacatacacagtaaaataatagg 48082683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 25393141 - 25393093
Alignment:
Q  17 aaaatgtcatccgatccaaaataaaaattacatgcaattcagtttggat 65  Q
    |||| ||||||||||||||||||||||| ||||||| ||  ||||||||    
T  25393141 aaaaagtcatccgatccaaaataaaaatcacatgcagtttggtttggat 25393093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 34597650 - 34597603
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggtt 404  Q
    ||||||||||||||||| |||||||||||||| | ||| ||||||||||    
T  34597650 ataatactaataaaagaataaataagtattaaaagtta-ttttgcggtt 34597603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 306 - 475
Target Start/End: Complemental strand, 22596263 - 22596095
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| ||||||||||   ||| |||||| ||| ||| || |||| |||| ||||||||||| |||||||||||||||||||| |||||||||||    
T  22596263 gtgcaatatataagattaaaatttaacaagcaacataataatgcaatata-taatgctaataaaagaataaataagtattaatatttatttttgcggttc 22596165  T
Q  406 aattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatc 475  Q
      || ||||||||||||||||| ||||  |||||| |||| |||||||||| ||||||||||||||||||    
T  22596164 gttttggtttggttttgaaaaagtgatccgaaatccgatctgatcttagcgatttttacaaaacaacatc 22596095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 306 - 512
Target Start/End: Original strand, 21352233 - 21352433
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| ||||||||||   ||| | |||| ||| ||| || |||| |||||||||||||||| |||||||||||||||||||| |||||||| ||    
T  21352233 gtgcaatatataagattaaaatttaacaaacaacataataatgcaatata-taatactaataaaagaataaataagtattaatatttatttttgcggctc 21352331  T
Q  406 aattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttg 505  Q
         |||  |||||||||||| ||||   ||||| ||||||||||||||||||||||||||||||||||||||| |||  ||| || | ||||||||||    
T  21352332 -----ggtacggttttgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaatatattcgattttttg 21352426  T
Q  506 cggtttt 512  Q
    |||||||    
T  21352427 cggtttt 21352433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 317 - 474
Target Start/End: Complemental strand, 15441307 - 15441156
Alignment:
Q  317 aagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttg 416  Q
    |||||||||||||||| || ||| |||  ||||| |||| |||||||||||||| | ||||||| |||||||||||| |||| |||||||     |||||    
T  15441307 aagattaaaaaccaacaagtaacataatgattcaatata-taatactaataaaacaataaataaatattaatatttattttttcggttca-----gtttg 15441214  T
Q  417 gttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacat 474  Q
    ||||||||||| ||||  ||||||||||| |||| ||||| ||| |||||||||||||    
T  15441213 gttttgaaaaagtgatccgaaatctgatctgatcctagcgatttatacaaaacaacat 15441156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 514
Target Start/End: Original strand, 42295724 - 42295935
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| ||||||||||   ||| |||||  ||| ||| || |||| ||||||||||||||||  ||||| ||||||||| ||| |||||| ||||    
T  42295724 gtgcaatatataagattaaaatttaacaagcaatataataatgcaatata-taatactaataaaagaacaaataggtattaataattatttttgcagttc 42295822  T
Q  406 aattcggtttggt----tttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattt 501  Q
      |||||||||||    |||  |||| ||||  |||| | || ||||||||||| |||||||||||||||||| ||||| |||  ||| || | || |||    
T  42295823 ggttcggtttggttcgattttgaaaagtgatccgaaagccgaaccgatcttagcagtttttacaaaacaacatacaaacgcatccaaatatattcggttt 42295922  T
Q  502 tttgcggtttttg 514  Q
    |||||||||||||    
T  42295923 tttgcggtttttg 42295935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 512
Target Start/End: Complemental strand, 16672157 - 16671995
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttc-----aattcggtttggttttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||| | ||||||||||| || |||||||||||||||||       ||||||| |||||||||||    ||  |||||| |||||||||    
T  16672157 ataatactaataaaataataaataagtataaaaatttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatc 16672058  T
Q  451 ttagcggtttttacaaaacaacatccaa-acacatttaaaaatttccgattttttgcggtttt 512  Q
     |||| |||||| ||||||||||||||| ||||||  |||||| | || |||||| |||||||    
T  16672057 atagcagtttttccaaaacaacatccaacacacatccaaaaatattcggttttttacggtttt 16671995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 231
Target Start/End: Complemental strand, 22596755 - 22596619
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttact-tctttcaaagaatataa------tatt 191  Q
    |||||||||| | ||| |||||||||| |||||||| ||||| |||||||||||  |||| ||||||||||| | |||  ||||||||||      ||||    
T  22596755 caaatatatgcggtttaatttggatcgatttttggacatccataatgcaaaata--tatt-ttttatttactcttttttgaagaatataaattttttatt 22596659  T
Q  192 tttattaatattacacaaacaccgtaaaataataggtttg 231  Q
      |||||||||||||||||||| |||||||||||||||||    
T  22596658 aatattaatattacacaaacacggtaaaataataggtttg 22596619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 29772623 - 29772494
Alignment:
Q  86 aactaatctgtttcaaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttacttctttcaaagaatat 185  Q
    |||| ||||| | |||||||||| | ||| |||||||||||||||||||||| ||||||||||||||| |  | || ||||||||| |||  ||||| ||    
T  29772623 aactgatctgatccaaatatatgcggtttaatttggatcggtttttggatattcaaaatgcaaaatatatgattttctatttactt-tttttaagaaaat 29772525  T
Q  186 aa---tatttttattaatattacacaaacac 213  Q
    ||   ||||  ||||||||||||||||||||    
T  29772524 aattttattaatattaatattacacaaacac 29772494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 404
Target Start/End: Complemental strand, 7418310 - 7418214
Alignment:
Q  307 tgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggtt 404  Q
    ||||||||| |||||||||||||| | |||||  ||| ||| || |||| | ||||||||| |||| |||||||||||||  ||||||||||||||||    
T  7418310 tgcaatatataagattaaaaaccagcaagcaatataataatgcaatata-tgatactaatataagaataaataagtattagaatttacttttgcggtt 7418214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 484
Target Start/End: Complemental strand, 10997381 - 10997263
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagc 455  Q
    ||||| ||||||||||| |||||| |||||||||||||||||| |||     ||||||| |||||||| ||| |||| | ||     || ||||  || |    
T  10997381 ataatgctaataaaagaataaatatgtattaatatttacttttacgg-----ttcggttcggttttgagaaagtgatctaaa-----attcgattctaac 10997292  T
Q  456 ggtttttacaaaacaacatccaaacacat 484  Q
    |||||||||||||||||||||||||||||    
T  10997291 ggtttttacaaaacaacatccaaacacat 10997263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 15486629 - 15486581
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggtt 404  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||||||    
T  15486629 ataatagtaataaaagaataaataaatattaatatttacttttgcggtt 15486581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 419
Target Start/End: Complemental strand, 18511694 - 18511631
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggtt 419  Q
    ||||||||||||||| | |||||||| ||||| || ||||||||||||||  ||||||||||||    
T  18511694 ataatactaataaaataataaataagaattaaaatctacttttgcggttcggttcggtttggtt 18511631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 484
Target Start/End: Complemental strand, 7753876 - 7753807
Alignment:
Q  412 gtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacat 484  Q
    |||||||||||||||| | || ||||||| ||||||||| |||   |||||||||||||||||| ||||||||    
T  7753876 gtttggttttgaaaaagttatctgaaatccgatccgatcatag---tttttacaaaacaacatcaaaacacat 7753807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 21352007 - 21352057
Alignment:
Q  103 tatatgagattttatttggatcggtttttggatatccaaaatgcaaaatat 153  Q
    |||||| | ||| |||||||||||||||||||| |||||||||||||||||    
T  21352007 tatatgcggtttaatttggatcggtttttggatgtccaaaatgcaaaatat 21352057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 512
Target Start/End: Complemental strand, 18511600 - 18511540
Alignment:
Q  452 tagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    ||||||||||  |||||||||||||||||||||  |||||| | || ||||||||||||||    
T  18511600 tagcggttttgccaaaacaacatccaaacacatccaaaaatattcggttttttgcggtttt 18511540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 16672415 - 16672372
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaa 142  Q
    |||||||||| | ||| |||||||||||||||||||||||||||    
T  16672415 caaatatatgcggtttaatttggatcggtttttggatatccaaa 16672372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 19968574 - 19968539
Alignment:
Q  113 tttatttggatcggtttttggatatccaaaatgcaa 148  Q
    ||||||||||||||||||||||||||||||| ||||    
T  19968574 tttatttggatcggtttttggatatccaaaacgcaa 19968539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 21352103 - 21352140
Alignment:
Q  194 tattaatattacacaaacaccgtaaaataataggtttg 231  Q
    |||||||||||||||||||  |||||||||||||||||    
T  21352103 tattaatattacacaaacagggtaaaataataggtttg 21352140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 42295496 - 42295545
Alignment:
Q  97 ttcaaatatatgagattttatttggatcggtttttggatatccaaaatgc 146  Q
    ||||||||||||   ||| ||||||||||||||||||| |||||||||||    
T  42295496 ttcaaatatatgcagtttaatttggatcggtttttggacatccaaaatgc 42295545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 42295596 - 42295633
Alignment:
Q  194 tattaatattacacaaacaccgtaaaataataggtttg 231  Q
    |||||||||||||||||||  |||||||||||||||||    
T  42295596 tattaatattacacaaacaaggtaaaataataggtttg 42295633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 10997622 - 10997535
Alignment:
Q  116 atttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttacttctttcaaagaatataatatttttattaatatta 204  Q
    ||||||||| ||| |||||||||||||||| ||| ||| | || ||||||||  || |||  ||||||| ||||||| |||||||||||    
T  10997622 atttggatcagttgttggatatccaaaatgaaaattatattttattttattttatt-tttttaagaataaaatatttgtattaatatta 10997535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 306 - 484
Target Start/End: Original strand, 3901053 - 3901229
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| |||||||||||||||| |||||| ||| |||||| |||| ||||||||||||| || |||||||||||| | |||||||||||||||||    
T  3901053 gtgcaatatataagattaaaaaccaacgagcaacataataattcaatata-taatactaataaa-gaataaataagtattcacatttacttttgcggttc 3901150  T
Q  406 aattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacat 484  Q
      ||||||| |||||| ||||| ||||  ||| ||  ||| |||||| ||||||||  |||||||||||||||||||||    
T  3901151 ggttcggttcggttttaaaaaagtgatccgaagtccaatctgatcttggcggttttggcaaaacaacatccaaacacat 3901229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 356 - 470
Target Start/End: Complemental strand, 13531434 - 13531320
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagc 455  Q
    ||||| ||||||||||| |||||||||||||||||||| |||||||||||  || |||| |||||||||||| ||||  ||||||||||| ||| ||||     
T  13531434 ataatgctaataaaagaataaataagtattaatatttatttttgcggttcggtttggttcggttttgaaaaagtgattcgaaatctgatctgatattagt 13531335  T
Q  456 ggtttttacaaaaca 470  Q
    |||||||||||||||    
T  13531334 ggtttttacaaaaca 13531320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 512
Target Start/End: Original strand, 16705329 - 16705473
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagc 455  Q
    ||||||||||||||| | ||||||||||| || |||||||||||||||||     |||| |||||||||||        | |||| ||||||||| ||||    
T  16705329 ataatactaataaaataataaataagtataaaaatttacttttgcggttc-----ggttcggttttgaaaac-------gcaatccgatccgatcatagc 16705416  T
Q  456 ggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    ||||||| |||||||||||||||||||||  |||||| | |||||||||||||||||    
T  16705417 ggtttttccaaaacaacatccaaacacatccaaaaatattcgattttttgcggtttt 16705473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 356 - 512
Target Start/End: Original strand, 7608244 - 7608405
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaatt-----cggtttggttttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||| | ||||||||||| || |||||||||||||||||  ||     ||||| |||||||||||    ||  |||||| |||||||||    
T  7608244 ataatactaataaaataataaataagtataaaaatttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatc 7608343  T
Q  451 ttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
     ||||||||||| |||||||||||||||||| ||  |||||| | || ||||||||||||||    
T  7608344 atagcggtttttccaaaacaacatccaaacaaatccaaaaatattcggttttttgcggtttt 7608405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 10386556 - 10386451
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttacttctttcaaagaatataatatttttatta 198  Q
    ||||||||||   ||| ||||||||| |||||||||||||||||||||||| ||| |||| |||||||||| | |||  ||||||||||| || ||||||    
T  10386556 caaatatatgcagtttaatttggatctgtttttggatatccaaaatgcaaagtatatatttttttatttacattttttgaagaatataattttgttatta 10386457  T
Q  199 atatta 204  Q
    ||||||    
T  10386456 atatta 10386451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 356 - 512
Target Start/End: Complemental strand, 21946854 - 21946693
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggtt-----ttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||| | |||||||| ||||| || ||||||||||||||  || |||||||||     |||||||  ||||  |||||| || || ||     
T  21946854 ataatactaataaaataataaataagaattaaaatctacttttgcggttcggtttggtttggttcggttttgaaaagctgatccgaaatccgaaccaatt 21946755  T
Q  451 ttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
     ||||||||||| |||||||||||||||||||||  |||||| | || ||||||||||||||    
T  21946754 atagcggtttttccaaaacaacatccaaacacatcaaaaaatattcggttttttgcggtttt 21946693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 512
Target Start/End: Original strand, 10484305 - 10484504
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| | |||| ||||||||| |||||| ||  ||| || |||| ||||| |||||||||| ||||||||||||||    ||||||||||||||    
T  10484305 gtgcaatatatatgatttaaaaccaacaagcaacatagtaatgcaatata-taatattaataaaagaataaataagtattaa----tacttttgcggttc 10484399  T
Q  406 aattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttg 505  Q
    | |||||    ||||||| |||   ||  ||||||  |||||||| |||||||||||| || ||||||||||||| |||| |||||| |  ||||||||     
T  10484400 agttcgg--cagttttgagaaagcaatccgaaatccaatccgatcatagcggtttttagaagacaacatccaaacgcattaaaaaatatttgatttttta 10484497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 476
Target Start/End: Complemental strand, 10386325 - 10386171
Alignment:
Q  310 aatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttcaatt 409  Q
    |||||| |||||||||||||||| |||||| ||| ||| || | || ||||||||||||||    ||| ||||||||||||||||||||||||||         
T  10386325 aatatataagattaaaaaccaacgagcaacataataatgcaatcta-taatactaataaaa----aaaaaagtattaatatttacttttgcggtt----- 10386236  T
Q  410 cggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatcc 476  Q
     || | ||||||| |||| ||||  |||||| |||  |||| |||||||||||||||||||||||||    
T  10386235 -ggatcggttttg-aaaagtgatccgaaatccgatatgatcctagcggtttttacaaaacaacatcc 10386171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 10484087 - 10484192
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttacttctt--tcaaagaatataatatttttat 196  Q
    |||||||||| | ||| ||||  ||||| ||||| |||||||||||||||||||| |||  |||||||||||| ||  |  ||||||||||| |||||||    
T  10484087 caaatatatgcggtttaatttaaatcggattttgaatatccaaaatgcaaaatatatat--ttttatttacttttttgttgaagaatataatttttttat 10484184  T
Q  197 taatatta 204  Q
    ||||||||    
T  10484185 taatatta 10484192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 29174957 - 29175008
Alignment:
Q  97 ttcaaatatatgagattttatttggatcggtttttggatatccaaaatgcaa 148  Q
    |||||||||||| | ||| ||||||||||||||||| |||||||||||||||    
T  29174957 ttcaaatatatgcggtttaatttggatcggtttttgtatatccaaaatgcaa 29175008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 30395967 - 30395918
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaa 148  Q
    |||||||||| ||||| |||||||||| |||||||||||||||| |||||    
T  30395967 caaatatatgcgatttaatttggatcgctttttggatatccaaagtgcaa 30395918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 10517586 - 10517634
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggtt 404  Q
    ||||||||||||||| | |||||||| ||||| ||||||||||||||||    
T  10517586 ataatactaataaaataataaataagaattaaaatttacttttgcggtt 10517634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 7607986 - 7608029
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaa 142  Q
    |||||||||| | ||| |||||||||||||||||||||||||||    
T  7607986 caaatatatgcggtttaatttggatcggtttttggatatccaaa 7608029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 16705068 - 16705111
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaa 142  Q
    |||||||||| | ||| |||||||||||||||||||||||||||    
T  16705068 caaatatatgcggtttaatttggatcggtttttggatatccaaa 16705111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 4463808 - 4463854
Alignment:
Q  17 aaaatgtcatccgatccaaaataaaaattacatgcaattcagtttgg 63  Q
    |||||||||||||||| ||||||||||| ||||||  ||||||||||    
T  4463808 aaaatgtcatccgatctaaaataaaaatcacatgctgttcagtttgg 4463854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 3900924 - 3900961
Alignment:
Q  194 tattaatattacacaaacaccgtaaaataataggtttg 231  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  3900924 tattaatattacacaaacacggtaaaataataagtttg 3900961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 145
Target Start/End: Original strand, 4463892 - 4463921
Alignment:
Q  116 atttggatcggtttttggatatccaaaatg 145  Q
    ||||||||||||||||||||||||||||||    
T  4463892 atttggatcggtttttggatatccaaaatg 4463921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 13531613 - 13531576
Alignment:
Q  194 tattaatattacacaaacaccgtaaaataataggtttg 231  Q
    |||||||||||||||||||| | |||||||||||||||    
T  13531613 tattaatattacacaaacacgggaaaataataggtttg 13531576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 3900845 - 3900877
Alignment:
Q  116 atttggatcggtttttggatatccaaaatgcaa 148  Q
    |||||||||| ||||||||||||||||||||||    
T  3900845 atttggatcgatttttggatatccaaaatgcaa 3900877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 306 - 512
Target Start/End: Complemental strand, 27110838 - 27110638
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| ||||||||||   ||| | |||| ||| ||| || |||| |||||||||||||||| |||||||||||||||||||| |||||||||||    
T  27110838 gtgcaatatataagattaaaatttaacaaacaacataataatgcaatata-taatactaataaaagaataaataagtattaatatttatttttgcggttc 27110740  T
Q  406 aattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttg 505  Q
         |||| ||||||| |||| ||||    |||| |||||||||||||||||||||||||||||||||||||||||||  ||| || | || |||||||    
T  27110739 -----ggttcggttttggaaaagtgatccagaatccgatccgatcttagcggtttttacaaaacaacatccaaacacatccaaatatattcggttttttg 27110645  T
Q  506 cggtttt 512  Q
    |||||||    
T  27110644 cggtttt 27110638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 310 - 516
Target Start/End: Original strand, 12291280 - 12291495
Alignment:
Q  310 aatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttcaatt 409  Q
    |||||| |||||| |||| || | |||||| ||| |||||| |||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| ||    
T  12291280 aatatataagatttaaaatcatcaagcaacataataattcaatata-taatactaataaaagaataaataagtattaatatttacttttacggttcagtt 12291378  T
Q  410 cggtttggtt----------ttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgat 499  Q
    | ||||||||          ||||||||||| |   ||||| ||||| ||||||| ||||||||||||||||||||||||  |||  |||||| | || |    
T  12291379 cagtttggttcggttcggtattgaaaaaatggtccaaaatccgatccaatcttagaggtttttacaaaacaacatccaaatgcatccaaaaatattcggt 12291478  T
Q  500 tttttgcggtttttgat 516  Q
    ||||| |||| ||||||    
T  12291479 tttttacggtatttgat 12291495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 306 - 484
Target Start/End: Original strand, 1495801 - 1495983
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| | ||||||||   ||| |||||| ||| ||| || |||| |||||||||||||||| || ||||||||||||||||| |||| ||||||    
T  1495801 gtgcaatatatatgattaaaatttaacaagcaacataataatgcaatata-taatactaataaaagaatatataagtattaatatttattttttcggttc 1495899  T
Q  406 aattcggttt-----ggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacat 484  Q
      ||| ||||     |||||||||||  ||||  |||| | |||||||||||||||||||||||||||||| ||||||||||||    
T  1495900 ggttctgtttaattcggttttgaaaaggtgatccgaaacccgatccgatcttagcggtttttacaaaacaatatccaaacacat 1495983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 356 - 512
Target Start/End: Complemental strand, 40987484 - 40987323
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaatt-----cggtttggttttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||| | ||||||||||| || |||||||||||||||||  ||     ||||| |||||||||||    ||  |||||| |||||||||    
T  40987484 ataatactaataaaataataaataagtataaaaatttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatc 40987385  T
Q  451 ttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
     ||||||||||| |||||||||||||||||||||  |||||| | || ||||||||||||||    
T  40987384 atagcggtttttccaaaacaacatccaaacacatccaaaaatattcggttttttgcggtttt 40987323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 10416283 - 10416096
Alignment:
Q  16 caaaatgtcatccgatccaaaataaaaattacatgcaattcagtttggatgactattctnnnnnnnttcgaactaatctgtttcaaatatatgagatttt 115  Q
    |||||| |||||||||||||||||||||||||||||  ||  ||||||||||||||| |        | ||||| ||  | | |||||||||| |||||     
T  10416283 caaaatatcatccgatccaaaataaaaattacatgcggtttggtttggatgactattataaaaaatct-gaacttattcgatccaaatatatgcgattta 10416185  T
Q  116 atttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttac-ttctttcaaagaatataatatttttattaatatta 204  Q
    |||||||| ||||| || ||||||||||||||| |||| |||| |||||||||| |||| | |||||||||||| |||||||||||||||    
T  10416184 atttggattggtttatgaatatccaaaatgcaagatatatatttttttatttactttctgttaaagaatataat-tttttattaatatta 10416096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 309 - 405
Target Start/End: Complemental strand, 10415954 - 10415859
Alignment:
Q  309 caatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    ||||||| |||||||||||||||| |||||| ||| ||| || |||| |||||||||||||||| |||||||||||||| || |||||||| |||||    
T  10415954 caatatataagattaaaaaccaacaagcaacataataatgcaatata-taatactaataaaagaataaataagtattaagatgtacttttgtggttc 10415859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 356 - 489
Target Start/End: Original strand, 35449609 - 35449746
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggt----tttgaaaaaatgatatgaaatctgatccgatct 451  Q
    ||||||||||||||||| |||||| ||||||||||||| ||||||||||   | |||||||||    |||  |||| ||||   ||| | || |||||||    
T  35449609 ataatactaataaaagaataaataggtattaatatttatttttgcggttaggtacggtttggttcaattttgaaaagtgatccaaaagccgaaccgatct 35449708  T
Q  452 tagcggtttttacaaaacaacatccaaacacatttaaa 489  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  35449709 tagcggtttttacaaaacaacatccaaacgcatctaaa 35449746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 1495571 - 1495709
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttact-tctttcaaagaatataatatttt---- 193  Q
    |||||||||| | ||| ||||||||||||||||||| |||||||||||||||||  |||| ||||| ||||| | |||  ||||||||||| ||||        
T  1495571 caaatatatgcggtttaatttggatcggtttttggacatccaaaatgcaaaata--tatttttttagttactcttttttgaagaatataattttttttat 1495668  T
Q  194 ---tattaatattacacaaacaccgtaaaataataggtttg 231  Q
       |||||||||||||||||||| || ||||||||||||||    
T  1495669 taatattaatattacacaaacacggtgaaataataggtttg 1495709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 405
Target Start/End: Complemental strand, 14718352 - 14718258
Alignment:
Q  310 aatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||| || ||||||||||||| | |||| ||| ||| || |||  |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14718352 aatatataatattaaaaaccaacaatcaacataataatgcaatatg-taatactaataaaagaataaataagtattaatatttacttttgcggttc 14718258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 17342163 - 17342299
Alignment:
Q  101 aatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttacttctttcaaagaatataatatttt------- 193  Q
    |||||||| | ||| ||||||||||| ||||||||||||||||||||||||||||| | ||||||| | || | |  || |||||||| ||||           
T  17342163 aatatatgcggtttaatttggatcggattttggatatccaaaatgcaaaatatgtaat-ttttattgatttttattgaaaaatataattttttttattaa 17342261  T
Q  194 tattaatattacacaaacaccgtaaaataataggtttg 231  Q
    |||||||||||||||||||| |||||||||||||||||    
T  17342262 tattaatattacacaaacacagtaaaataataggtttg 17342299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 356 - 514
Target Start/End: Complemental strand, 33160662 - 33160499
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttgg-----ttttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||| | |||||||| ||||| || ||||||||||||||  ||||||||||     |||||||||  ||||  |||||| || | ||||    
T  33160662 ataatactaataaaataataaataagaattaaaatctacttttgcggttcggttcggtttggttcgattttgaaaaggtgatccgaaatccgaactgatc 33160563  T
Q  451 ttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttttg 514  Q
     || | |||||| ||||||||| |||||||||||  |||||| | || ||||||||||||||||    
T  33160562 ataacagtttttccaaaacaacctccaaacacatccaaaaatattcggttttttgcggtttttg 33160499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 403
Target Start/End: Complemental strand, 41061418 - 41061322
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggt 403  Q
    |||||||||| ||||||||||   ||| | |||| ||| ||| || |||| |||||||||||||||| |||||||||||||||||||| |||||||||    
T  41061418 gtgcaatatataagattaaaatttaacaaacaacataataatgcaatata-taatactaataaaagaataaataagtattaatatttatttttgcggt 41061322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 402 - 506
Target Start/End: Complemental strand, 4986274 - 4986170
Alignment:
Q  402 gttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattt 501  Q
    |||||||| |||| |||||||||||| ||||   |||||||||  |||| ||| ||||| ||||||||||||||||||| |||  |||||| | ||||||    
T  4986274 gttcaatttggttcggttttgaaaaagtgatcctaaatctgatttgatcctagtggtttatacaaaacaacatccaaacgcatcaaaaaatattcgattt 4986175  T
Q  502 tttgc 506  Q
    |||||    
T  4986174 tttgc 4986170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 40044662 - 40044608
Alignment:
Q  16 caaaatgtcatccgatccaaaataaaaattacatgcaattcagtttggatgacta 70  Q
    ||||||||||||||||||||||||||||| ||||||  ||| |||||||||||||    
T  40044662 caaaatgtcatccgatccaaaataaaaatcacatgcggttcggtttggatgacta 40044608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 484
Target Start/End: Complemental strand, 13521625 - 13521502
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagc 455  Q
    ||||||||||||||| | ||||||||||| || |||||||||||||||||     |||| |||||||||||    || ||||||| ||||   || ||||    
T  13521625 ataatactaataaaataataaataagtataaaaatttacttttgcggttc-----ggttcggttttgaaaatgcaatttgaaatccgatctagtcatagc 13521531  T
Q  456 ggtttttacaaaacaacatccaaacacat 484  Q
    |||| || |||||||||||| ||||||||    
T  13521530 ggttattccaaaacaacatctaaacacat 13521502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 512
Target Start/End: Complemental strand, 13554811 - 13554751
Alignment:
Q  452 tagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    ||||||||||| ||||||||||||||||||||| ||||||| | |||| |||||| |||||    
T  13554811 tagcggtttttccaaaacaacatccaaacacatctaaaaatattcgatcttttgcagtttt 13554751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 480
Target Start/End: Complemental strand, 41061290 - 41061218
Alignment:
Q  408 ttcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaac 480  Q
    ||||||| |||||||||||| | ||   ||||| | |||||||||||||||||||||||||||| ||||||||    
T  41061290 ttcggttcggttttgaaaaagtaatccaaaatccgttccgatcttagcggtttttacaaaacaatatccaaac 41061218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 33745945 - 33746074
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttact-tctttcaaagaatataatattttt-at 196  Q
    |||||||||| | ||| ||||| ||| ||||| |||||||||||||||||| ||| |||| ||||||||||  | |||  ||||| ||| | ||||| ||    
T  33745945 caaatatatgcggtttaatttgaatcagtttt-ggatatccaaaatgcaaagtatatatt-ttttatttaccattttttgaagaaaatatttttttttat 33746042  T
Q  197 taatattacacaaacaccgtaaaataataggt 228  Q
    || |||||||||||||| ||||||||||||||    
T  33746043 tactattacacaaacacggtaaaataataggt 33746074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 473
Target Start/End: Original strand, 33746156 - 33746312
Alignment:
Q  310 aatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttcaatt 409  Q
    |||||| |||||||||||| ||| |||||| ||| ||| || |||| || || |||||||||| | ||||||| |||||||||||||||| ||     ||    
T  33746156 aatatataagattaaaaactaacaagcaacataataatgcaatata-tactattaataaaagattgaataagtcttaatatttacttttgtgg-----tt 33746249  T
Q  410 cggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaaca 473  Q
     ||| |||||||||||||| |||  | |||| | ||||||| | ||||||||||||||| ||||    
T  33746250 tggtgtggttttgaaaaaa-gatccggaatccgttccgatcctggcggtttttacaaaataaca 33746312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 4986446 - 4986410
Alignment:
Q  195 attaatattacacaaacaccgtaaaataataggtttg 231  Q
    ||||||||||||||||||| |||||||||||||||||    
T  4986446 attaatattacacaaacacggtaaaataataggtttg 4986410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 479
Target Start/End: Complemental strand, 17035134 - 17035102
Alignment:
Q  447 gatcttagcggtttttacaaaacaacatccaaa 479  Q
    |||||||||||||||||||||||||||||||||    
T  17035134 gatcttagcggtttttacaaaacaacatccaaa 17035102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 29501330 - 29501381
Alignment:
Q  358 aatactaataaaagagtaaataagtattaatatttacttttgcggttcaatt 409  Q
    ||||||||||||| | |||||||  ||||| |||||||||||||||||||||    
T  29501330 aatactaataaaataataaataaacattaaaatttacttttgcggttcaatt 29501381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 40987742 - 40987699
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaa 142  Q
    |||||||||| | ||| |||||||||||||||||||||||||||    
T  40987742 caaatatatgcggtttaatttggatcggtttttggatatccaaa 40987699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 40044579 - 40044475
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttgga-tatccaaaatgcaaaatatgtattcttttatttacttctttcaaagaatataatatttttatt 197  Q
    |||||||||| | ||| |||||||||  ||||| || ||| ||||||||||||||| | || ||| |||||||| ||| || ||||||||| ||||||||    
T  40044579 caaatatatgcggtttaatttggatctattttttgaatatacaaaatgcaaaatatattttattt-atttactttttttaa-gaatataatttttttatt 40044482  T
Q  198 aatatta 204  Q
    |||||||    
T  40044481 aatatta 40044475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 13555174 - 13555129
Alignment:
Q  97 ttcaaatatatgagattttatttggatcggtttttggatatccaaa 142  Q
    |||||||||||| | ||| |||| ||||||||||||||||||||||    
T  13555174 ttcaaatatatgcggtttaatttagatcggtttttggatatccaaa 13555129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 231
Target Start/End: Original strand, 31755795 - 31755836
Alignment:
Q  190 tttttattaatattacacaaacaccgtaaaataataggtttg 231  Q
    ||||||||||||||||||||||||  ||||||||||| ||||    
T  31755795 tttttattaatattacacaaacacgataaaataatagatttg 31755836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 33996134 - 33996074
Alignment:
Q  97 ttcaaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtatt 158  Q
    |||||||||||| | ||| |||| |||| |||||||||||||||||||| ||||||| ||||    
T  33996134 ttcaaatatatgcggtttaatttagatcagtttttggatatccaaaatg-aaaatatatatt 33996074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 514
Target Start/End: Original strand, 42716146 - 42716243
Alignment:
Q  417 gttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttttg 514  Q
    ||||||||||| | ||  ||||||| |  ||||| ||||  ||||||||||||||||||||||| |||| |||||| | || |||| || ||||||||    
T  42716146 gttttgaaaaagtaatccgaaatctaaatcgatcctagctttttttacaaaacaacatccaaacgcattcaaaaatattcggttttatgtggtttttg 42716243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 12291148 - 12291184
Alignment:
Q  195 attaatattacacaaacaccgtaaaataataggtttg 231  Q
    |||||||||||||||||||  ||||||||||||||||    
T  12291148 attaatattacacaaacacgataaaataataggtttg 12291184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 356 - 512
Target Start/End: Complemental strand, 24614887 - 24614726
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggtt-----ttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||  ||||||||||||     || ||||| ||||   |||||||||||||||    
T  24614887 ataatactaataaaagaataaataagtattaatatttatttttgcggttcggttcggtttggttcggttttaaaaaagtgatccaaaatctgatccgatc 24614788  T
Q  451 ttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    ||||||||||||||||||| |||||||||  |||  ||| || | |||||||||||||||||    
T  24614787 ttagcggtttttacaaaacgacatccaaaagcatccaaatatattcgattttttgcggtttt 24614726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 307 - 480
Target Start/End: Original strand, 33719516 - 33719683
Alignment:
Q  307 tgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttca 406  Q
    ||||||||| ||||||||||||| || |||||| ||| ||| || |||| |||||||||||||||| |||||||||||| ||||||||||||| ||||||    
T  33719516 tgcaatatataagattaaaaaccgacaagcaacataataatgcaatata-taatactaataaaagaataaataagtattcatatttacttttgtggttca 33719614  T
Q  407 attcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaac 480  Q
         |||  ||||||||||| |||| |||||| |||| ||||| |||| ||||||||||||||||||||||||    
T  33719615 -----gttcagttttgaaaaagtgatctgaaatttgattcgatcctagcagtttttacaaaacaacatccaaac 33719683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 356 - 484
Target Start/End: Original strand, 41198474 - 41198602
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagc 455  Q
    ||||||||||||||||| ||||||||| |||||||||| |||||||||||  || ||||  |||||| |||| ||||  |||||| ||||||||||||||    
T  41198474 ataatactaataaaagaataaataagttttaatatttatttttgcggttcggtttggttcagttttggaaaagtgatccgaaatccgatccgatcttagc 41198573  T
Q  456 ggtttttacaaaacaacatccaaacacat 484  Q
    ||||||||||||||||||||||| |||||    
T  41198574 ggtttttacaaaacaacatccaatcacat 41198602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 306 - 480
Target Start/End: Original strand, 31091979 - 31092152
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| ||||||||||| |||| |||||| ||| ||| || || | |||||||||||||||| |||||||||||||||||||||||||| |||||    
T  31091979 gtgcaatatataagattaaaaatcaacaagcaacataataatgcaataga-taatactaataaaagaataaataagtattaatatttacttttgtggttc 31092077  T
Q  406 aattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaac 480  Q
      || | ||   |||||| ||| || | |||||||||||| ||||||||  ||||||||||||||||||||||||    
T  31092078 ggtttgattcaattttgagaaagtggtctgaaatctgatctgatcttagttgtttttacaaaacaacatccaaac 31092152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 306 - 512
Target Start/End: Complemental strand, 28655762 - 28655563
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| |||||||||||||||  |||||| ||| |||  | ||| ||||||||||||||||| |||||||||||||| |||||||| ||     |    
T  28655762 gtgcaatatataagattaaaaaccaa-tagcaacataataatgtaatat-ataatactaataaaagaataaataagtattaacatttacttatg-----c 28655670  T
Q  406 aattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttg 505  Q
    | |||||||||||||||| ||| |||| ||||||  ||||||||| ||  | |||||||||||||||||||||||||||  ||| || | || |||||||    
T  28655669 agttcggtttggttttgagaaagtgatctgaaattcgatccgatcctattgatttttacaaaacaacatccaaacacatcgaaatatattcggttttttg 28655570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 97 - 231
Target Start/End: Original strand, 33719284 - 33719421
Alignment:
Q  97 ttcaaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttacttctttcaaagaatataatatttt--- 193  Q
    |||||||||||| | ||| ||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| ||| || ||||||||| ||||       
T  33719284 ttcaaatatatgcggtttaatttggatcggtttttgaatatccaaaatgcaaaatatatatt-ttttatttactttttttaa-gaatataattttttatt 33719381  T
Q  194 --tattaatattacacaaacaccgtaaaataataggtttg 231  Q
      |||||||||||||||| ||| |||||||||||||||||    
T  33719382 aatattaatattacacaagcacggtaaaataataggtttg 33719421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 356 - 512
Target Start/End: Complemental strand, 5559527 - 5559376
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagc 455  Q
    ||||||||||||||| | ||||||||||| || |||||||||||||||||     ||||||||||||||||    ||  |||||||||||||||| | ||    
T  5559527 ataatactaataaaataataaataagtataaaaatttacttttgcggttc-----ggtttggttttgaaaatgcaatccgaaatctgatccgatcatggc 5559433  T
Q  456 ggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    ||||||| |||||||||||||||||||||  |||||| | |  ||||||||||||||    
T  5559432 ggtttttccaaaacaacatccaaacacatccaaaaatattcagttttttgcggtttt 5559376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 306 - 513
Target Start/End: Original strand, 35672015 - 35672221
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| ||||||||||   ||| || ||| ||| ||| || |||| |||||||||||||||| ||||||| || ||||||||| |||||||||||    
T  35672015 gtgcaatatataagattaaaatttaacaagtaacataataatgcaatata-taatactaataaaagaataaataaatactaatatttatttttgcggttc 35672113  T
Q  406 aattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttg 505  Q
      || |||| ||| | |||||| ||||   ||||  |||| ||||||||||||||||| |||| ||||||||||||||| |||| || | || |||||||    
T  35672114 ggtttggttcggtatcgaaaaagtgattcaaaattcgatctgatcttagcggtttttaaaaaataacatccaaacacatctaaatatattcggttttttg 35672213  T
Q  506 cggttttt 513  Q
    | ||||||    
T  35672214 cagttttt 35672221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 513
Target Start/End: Complemental strand, 16902712 - 16902554
Alignment:
Q  355 aataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttag 454  Q
    |||||||||||||||| | ||||||| | |||| | ||| |||||||||||  || |||| |||||||||||| ||||   |||| | ||| |||| | |    
T  16902712 aataatactaataaaataataaataatttttaaaaattatttttgcggttcggtttggttcggttttgaaaaagtgatccaaaatttaatctgatccttg 16902613  T
Q  455 cggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggttttt 513  Q
    | |||||| ||||||||||||||||||||| ||||||| |  | ||||||||| |||||    
T  16902612 cagtttttgcaaaacaacatccaaacacatctaaaaatattaggttttttgcgattttt 16902554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 28656068 - 28655840
Alignment:
Q  16 caaaatgtcatccgatccaaaataaaaattacatgcaattcag-----tttggatgactattctnnnnnnnttcgaactaatctgtttcaaatatatgag 110  Q
    |||||||||||||||| |||||||||||| ||||||| ||| |     ||| ||||||||||||       |  |||| |||| | |  ||||||||| |    
T  28656068 caaaatgtcatccgattcaaaataaaaatcacatgcagttcggttcgattttgatgactattctaaaaaaatcagaaccaatccgatcaaaatatatgcg 28655969  T
Q  111 attttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttac--ttctttcaaagaatataa------tatttttattaatat 202  Q
     ||| |||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||  || |||  ||||||||||      ||||  |||||||||    
T  28655968 gtttaatttggatcgatttttggatattcaaaatgcaaattatatatttttttatttacttttatttttaagaatataaatttcttattaatattaatat 28655869  T
Q  203 tacacaaacaccgtaaaataataggtttg 231  Q
    ||||||||||| ||||||||||| |||||    
T  28655868 tacacaaacacggtaaaataataagtttg 28655840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 41198114 - 41198247
Alignment:
Q  17 aaaatgtcatccgatccaaaataaaaattacatgcaattcagtt-----tggatgactattctnnnnnnnttcgaactaatctgtttcaaatatatgaga 111  Q
    ||||||||| |||||||||||||||||| ||||||  ||| |||     ||||||| ||||||       | |||||| ||||| | |||||||||| ||    
T  41198114 aaaatgtcaaccgatccaaaataaaaatcacatgcggttcggttcggtttggatgagtattctaacaaaatccgaactgatctgatccaaatatatgcga 41198213  T
Q  112 ttttatttggatcggtttttggatatccaaaatg 145  Q
    ||| ||||||||||||||||||||||||||||||    
T  41198214 tttaatttggatcggtttttggatatccaaaatg 41198247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 413 - 512
Target Start/End: Original strand, 24063938 - 24064037
Alignment:
Q  413 tttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    ||||||||||||||| ||||  |||||| ||||| ||| ||||||||||| |||||||||||||| ||||| | || ||| | ||||||||||| |||||    
T  24063938 tttggttttgaaaaagtgatccgaaatccgatccaatcatagcggtttttccaaaacaacatccatacacaatcaataatattcgattttttgcagtttt 24064037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 400
Target Start/End: Original strand, 7785466 - 7785558
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgc 400  Q
    |||||||||| |||||||||||||| | |||||| ||| ||| || |||| ||||||||||||| || ||||||| |||||||||||||||||||    
T  7785466 gtgcaatatataagattaaaaacca-caagcaacataataatacaatata-taatactaataaatgaataaataaatattaatatttacttttgc 7785558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 230
Target Start/End: Complemental strand, 38856180 - 38856064
Alignment:
Q  116 atttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttacttctttcaaagaatataatatttttattaat------attacacaa 209  Q
    |||| |||||||||||||||| |||||||| ||||||| |||| ||||| |||||| |||  |||||||||||||||||||||||      ||||| |||    
T  38856180 attttgatcggtttttggata-ccaaaatgtaaaatatatatt-ttttaattactttttt--aagaatataatatttttattaatattaatattacgcaa 38856085  T
Q  210 acaccgtaaaataataggttt 230  Q
    |||| ||||||||||||||||    
T  38856084 acacagtaaaataataggttt 38856064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 512
Target Start/End: Complemental strand, 14461845 - 14461699
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagc 455  Q
    ||||||||||||||| | |||||||| || || |||||||||||||||||          |||||||||||    ||  |||||| ||||||||| ||||    
T  14461845 ataatactaataaaataataaataagaataaaaatttacttttgcggttc----------ggttttgaaaacgcaatccgaaatccgatccgatcatagc 14461756  T
Q  456 ggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    ||||||| |||||||||||||||||||||  |||||| | ||  |||||||||||||    
T  14461755 ggtttttccaaaacaacatccaaacacatccaaaaatattcgggtttttgcggtttt 14461699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 24615272 - 24615059
Alignment:
Q  17 aaaatgtcatccgatccaaaataaaaattacatgcaattcagtttggatgactattctnnnnnnnttcgaactaatctgtttcaaatatatgagatttta 116  Q
    ||||||||| |||||| ||||||||||| ||||||  ||| |||||||||| ||||||       | |||||  | | | | |||||||||| | ||| |    
T  24615272 aaaatgtcaaccgatctaaaataaaaatcacatgcggttcggtttggatgagtattctaaaaaaatccgaaccgagccgatccaaatatatgcggtttaa 24615173  T
Q  117 tttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttact-tctttcaaagaatataatatttttattaatattacacaaacaccg 215  Q
    ||||||||| |||||  || |||||||||||||||||  ||| || |||||| | | ||| || |||||   | | |||||||||||||||||||||  |    
T  24615172 tttggatcgatttttttatgtccaaaatgcaaaatat--atttttatatttaatcttttttaaggaataatttttctttattaatattacacaaacatgg 24615075  T
Q  216 taaaataataggtttg 231  Q
    ||||||||||||||||    
T  24615074 taaaataataggtttg 24615059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 512
Target Start/End: Complemental strand, 50551053 - 50550958
Alignment:
Q  417 gttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    ||||||||||| |||| ||||||| |||  |||| |||  ||||| |||||||||||||||||  |||| |||||| | |||||||||||||||||    
T  50551053 gttttgaaaaagtgatctgaaatccgatatgatcctagtagttttaacaaaacaacatccaaatgcattcaaaaatattcgattttttgcggtttt 50550958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 35671801 - 35671854
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaata 152  Q
    ||||||||||   ||| |||||||||||||||||||||||||||||||||||||    
T  35671801 caaatatatgcagtttaatttggatcggtttttggatatccaaaatgcaaaata 35671854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 31088606 - 31088712
Alignment:
Q  97 ttcaaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttacttctttcaaagaatataa-tattttta 195  Q
    |||||||||||| | ||| |||||| ||| ||||||||||| |||||| |||||| | |||| ||||||||| || |||  |||||||||| | ||||||    
T  31088606 ttcaaatatatgcggtttaatttggttcgatttttggatattcaaaatacaaaatgtatatt-ttttatttagtt-tttttaagaatataatttttttta 31088703  T
Q  196 ttaatatta 204  Q
    |||||||||    
T  31088704 ttaatatta 31088712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 504
Target Start/End: Complemental strand, 41074946 - 41074894
Alignment:
Q  452 tagcggtttttacaaaacaacatccaaacacatttaaaaatttccgatttttt 504  Q
    ||||||||||| |||||||||||||||||||||  |||||| | |||||||||    
T  41074946 tagcggttttttcaaaacaacatccaaacacatccaaaaatattcgatttttt 41074894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 790311 - 790391
Alignment:
Q  155 tattcttttatttacttctttcaaagaatataatatttttattaa------tattacacaaacaccgtaaaataataggttt 230  Q
    |||| |||||||||||||||| || ||||||||| ||||||||||      |||||||||||||| ||||||||||| ||||    
T  790311 tatttttttatttacttcttttaa-gaatataatttttttattaatattattattacacaaacacagtaaaataataagttt 790391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 14462103 - 14462061
Alignment:
Q  100 aaatatatgagattttatttggatcggtttttggatatccaaa 142  Q
    ||||||||| | ||| |||||||||||||||||||||||||||    
T  14462103 aaatatatgcggtttaatttggatcggtttttggatatccaaa 14462061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 11619628 - 11619681
Alignment:
Q  19 aatgtcatccgatccaaaataaaaattacatgcaattcagtttggatgactatt 72  Q
    |||||||||||||||||||||||||| |||||   ||| ||||||| |||||||    
T  11619628 aatgtcatccgatccaaaataaaaatcacatgtggttcggtttggacgactatt 11619681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 400
Target Start/End: Complemental strand, 46011053 - 46010961
Alignment:
Q  307 tgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgc 400  Q
    ||||||||| || |||||||| |||| |||| | | | ||| || |||| ||| |||||||||||| ||||||| || ||||||||||||||||    
T  46011053 tgcaatatataaaattaaaaatcaacaagcagcatgataatacaatata-taacactaataaaagaataaataaatactaatatttacttttgc 46010961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 356 - 512
Target Start/End: Complemental strand, 4267489 - 4267328
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggtt-----ttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||  ||||||||||||     |||||||  ||||   ||||| |||||||||    
T  4267489 ataatactaataaaagaataaataagtattaatatttatttttgcggttcggttcggtttggttcggttttgaaaaggtgatccaaaatccgatccgatc 4267390  T
Q  451 ttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    |||||||||||||||||| ||||||||||| |||  ||| || | || ||||||||||||||    
T  4267389 ttagcggtttttacaaaataacatccaaacgcatccaaatatattcggttttttgcggtttt 4267328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 356 - 512
Target Start/End: Original strand, 31127223 - 31127374
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagc 455  Q
    ||||||||||||||| | ||||||||||| || |||||||||||||||||     ||||||||||||||||    ||  |||||| ||||||||| ||||    
T  31127223 ataatactaataaaataataaataagtataaaaatttacttttgcggttc-----ggtttggttttgaaaacgcaatccgaaatccgatccgatcatagc 31127317  T
Q  456 ggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    ||||||| |||||||||||||||||||||  |||||| | || ||||||||||||||    
T  31127318 ggtttttccaaaacaacatccaaacacatccaaaaatattcggttttttgcggtttt 31127374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 306 - 512
Target Start/End: Complemental strand, 3774008 - 3773804
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| ||||||||||   ||| | |||| ||| ||| || |||| ||||||||||||| || |||||||||||||||||||| |||||||||||    
T  3774008 gtgcaatatataagattaaaatttaacaaacaacataataatgcaatata-taatactaataaaggaataaataagtattaatatttatttttgcggttc 3773910  T
Q  406 aattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccga-tttttt 504  Q
      || ||||||||||||||||| ||||   ||||| ||||| ||||||| ||||||||| ||||||||||||||| |||  ||| || | ||| ||||||    
T  3773909 ggtttggtttggttttgaaaaagtgatccaaaatccgatcc-atcttagtggtttttac-aaacaacatccaaacgcatccaaatatattcgattttttt 3773812  T
Q  505 gcggtttt 512  Q
    ||||||||    
T  3773811 gcggtttt 3773804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 356 - 512
Target Start/End: Complemental strand, 6345439 - 6345288
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagc 455  Q
    ||||||||||||||| | ||||||||||| || |||||||||||||||||     ||||||||||||||||    ||  |||||| ||||||||| ||||    
T  6345439 ataatactaataaaataataaataagtataaaaatttacttttgcggttc-----ggtttggttttgaaaacgcaatccgaaatccgatccgatcatagc 6345345  T
Q  456 ggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    ||||||| |||||||||||||||||||||  |||||| |  | ||||||||||||||    
T  6345344 ggtttttccaaaacaacatccaaacacatccaaaaatatttggttttttgcggtttt 6345288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 356 - 512
Target Start/End: Original strand, 37948907 - 37949058
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagc 455  Q
    ||||||||||||||| | ||||||||||| || |||||||||||||||||     ||||||||||||||||    ||  |||||| ||||||||| ||||    
T  37948907 ataatactaataaaataataaataagtataaaaatttacttttgcggttc-----ggtttggttttgaaaacgcaatccgaaatccgatccgatcatagc 37949001  T
Q  456 ggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    ||||||| |||||||||||||||||||||  |||||| |  | ||||||||||||||    
T  37949002 ggtttttccaaaacaacatccaaacacatccaaaaatatttggttttttgcggtttt 37949058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 306 - 516
Target Start/End: Original strand, 42199990 - 42200195
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| |||||||||||||||| |||||| ||| ||| || |||| ||||||||||||         ||||||||||||||||||||||||||||    
T  42199990 gtgcaatatataagattaaaaaccaacaagcaacataataatgcaatata-taatactaataa---------taagtattaatatttacttttgcggttc 42200079  T
Q  406 aattcggtttg-----gttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgatt 500  Q
      |||||||||     || |||| ||| ||||  |||||  ||||||||| || ||||||||| |||||||||||||||||||| ||||||| | || |     
T  42200080 ggttcggtttgatctggtattgagaaagtgatccgaaattcgatccgatcataacggtttttataaaacaacatccaaacacatctaaaaatattcggtc 42200179  T
Q  501 ttttgcggtttttgat 516  Q
    |||||| |||||||||    
T  42200180 ttttgcagtttttgat 42200195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 512
Target Start/End: Original strand, 43619953 - 43620162
Alignment:
Q  307 tgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttca 406  Q
    ||||||||| ||||||||| |||||  |||||  || || | || |||| |||||||||||||| | ||||||||||| || |||||||||||||||||     
T  43619953 tgcaatatataagattaaataccaataagcaatatatcagtgcaatata-taatactaataaaataataaataagtataaaaatttacttttgcggttcg 43620051  T
Q  407 att-----cggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattt 501  Q
     ||     ||||| |||||||||||    ||  |||||| ||||||||| ||||||||||| |||| ||||||||||||||||  |||||| | || |||    
T  43620052 gtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaagcaacatccaaacacatccaaaaatattcggttt 43620151  T
Q  502 tttgcggtttt 512  Q
    |||||||||||    
T  43620152 tttgcggtttt 43620162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 356 - 480
Target Start/End: Complemental strand, 3106317 - 3106198
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagc 455  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||||||||     |||| |||||||| ||| ||||   ||||| ||| ||||| ||||    
T  3106317 ataatacttataaaagaataaattagtattaatatttacttttgcggttc-----ggttcggttttgagaaagtgatccaaaatccgatacgatcctagc 3106223  T
Q  456 ggtttttacaaaacaacatccaaac 480  Q
     ||||||||||||||||||||||||    
T  3106222 agtttttacaaaacaacatccaaac 3106198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 309 - 484
Target Start/End: Original strand, 27808893 - 27809056
Alignment:
Q  309 caatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttcaat 408  Q
    ||||||| |||||||||||| ||| |||||| ||| |||| | |||| |||||||||||||||| |||||||  ||||||||||||||||| |||||       
T  27808893 caatatataagattaaaaac-aacaagcaacataataattaaatata-taatactaataaaagaataaataatcattaatatttacttttggggttc--- 27808987  T
Q  409 tcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacat 484  Q
           |||||||||||| || | ||||||| |||||||||||| |||||||||| || |||||| |||||||||    
T  27808988 -------ggttttgaaaaagtggtctgaaatccgatccgatcttaacggtttttactaaccaacattcaaacacat 27809056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 355 - 484
Target Start/End: Complemental strand, 34191205 - 34191076
Alignment:
Q  355 aataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttag 454  Q
    |||||| | ||||||| | |||||||||||||||||||||||||| |||||  || | ||||||||||| ||| |||   ||||||||||  |||| |||    
T  34191205 aataatgcaaataaaataataaataagtattaatatttacttttgtggttcggtttgttttggttttgagaaagtgacccgaaatctgatatgatcctag 34191106  T
Q  455 cggtttttacaaaacaacatccaaacacat 484  Q
    ||| ||| ||||||||||||||| ||||||    
T  34191105 cggatttgacaaaacaacatccagacacat 34191076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 356 - 479
Target Start/End: Complemental strand, 1265249 - 1265121
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttc-----aattcggtttggttttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||| | ||||||||||| || |||||||||||||||||       |||||||||||||||||||    ||  |||||| |||||||||    
T  1265249 ataatactaataaaataataaataagtataaaaatttacttttgcggttcggtttggttcggtttggttttgaaaacgcaatccgaaatccgatccgatc 1265150  T
Q  451 ttagcggtttttacaaaacaacatccaaa 479  Q
     ||||||||||| ||||||||||||||||    
T  1265149 atagcggtttttccaaaacaacatccaaa 1265121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 393
Target Start/End: Complemental strand, 3289913 - 3289827
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatattta 393  Q
    |||||||||| ||||||||||| |||| |||||| ||| ||| || |||| |||||||||||||||| ||||||||||||||||||||    
T  3289913 gtgcaatatataagattaaaaatcaactagcaacataataatgcaatata-taatactaataaaagaataaataagtattaatattta 3289827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 513
Target Start/End: Original strand, 10183160 - 10183358
Alignment:
Q  319 gattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttg-- 416  Q
    |||||||||||||| ||  ||  || |||||| |||| ||||||||| |||||| |||||||||||||||||||||||||| ||||   || ||||||      
T  10183160 gattaaaaaccaacaagatacagaataattcaatata-taatactaagaaaagaataaataagtattaatatttacttttgtggttaggtttggtttgat 10183258  T
Q  417 --gttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccga-ttttttgcggttttt 513  Q
       ||||||||||  |||  |||||| ||||| |||||| | |||||||  |||||||||||||||||||  |||||| |  || |||||||||||||||    
T  10183259 tcattttgaaaaatcgattcgaaatccgatccaatcttaacagtttttaggaaacaacatccaaacacatccaaaaatatttgatttttttgcggttttt 10183358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 356 - 512
Target Start/End: Original strand, 26721120 - 26721281
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaatt-----cggtttggttttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||| | ||||||||||| || ||||||||||||||||   ||     ||||| |||||||||||    ||   ||||  |||||||||    
T  26721120 ataatactaataaaataataaataagtataaaaatttacttttgcggtttggtttggttcggttcggttttgaaaacgcaatccaaaataagatccgatc 26721219  T
Q  451 ttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
     ||||||||||| |||||||||||||||||||||  |||||| | || ||||||||||||||    
T  26721220 atagcggtttttccaaaacaacatccaaacacatccaaaaatattcggttttttgcggtttt 26721281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 10182912 - 10182968
Alignment:
Q  97 ttcaaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatat 153  Q
    |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||    
T  10182912 ttcaaatatatgcggtttaatttggatcggtttttggatatccaaaatgcaaaatat 10182968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 356 - 519
Target Start/End: Complemental strand, 15266086 - 15265930
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagc 455  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||||||       ||| ||||| |||||  ||||   |||| ||||||||| | |||    
T  15266086 ataatactaataaaagaataaataggtattaaaatttacttttgcggtt------tgttcggtttggaaaatgtgatccaaaatttgatccgatatgagc 15265993  T
Q  456 ggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttttgatatt 519  Q
    |||||||||||||||  || |||||||||| |||||| | | |||||||| |||||| ||||||    
T  15265992 ggtttttacaaaacactattcaaacacattaaaaaatattc-attttttgtggttttagatatt 15265930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 356 - 482
Target Start/End: Complemental strand, 4602740 - 4602609
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggtt-----ttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||| | |||||||| ||||| || ||||||||||||||  ||||||||||||     |||||||  ||||  |||||| || || |||    
T  4602740 ataatactaataaaataataaataagaattaaaatctacttttgcggttcggttcggtttggttcggttttgaaaatgtgatccgaaatccgaaccaatc 4602641  T
Q  451 ttagcggtttttacaaaacaacatccaaacac 482  Q
     ||||||||||  |||||||||||||||||||    
T  4602640 atagcggttttgccaaaacaacatccaaacac 4602609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 253224 - 253369
Alignment:
Q  18 aaatgtcatccgatccaaaataaaaattacatgcaattcagtttgg-----atgactattctnnnnnnnttcgaactaatctgtttcaaatatatgagat 112  Q
    ||||||||||||||||||||||||||| ||||||  ||| ||||||     ||||| |||||       | | |||| ||| | | |||| ||||| | |    
T  253224 aaatgtcatccgatccaaaataaaaataacatgcggttcggtttggtttgaatgacaattctaaaataatccaaactgatccgatccaaacatatgcggt 253323  T
Q  113 tttatttggatcggtttttggatatccaaaatgcaaaatatgtatt 158  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||    
T  253324 tatatttggatcggtttttggatatccaaaatgcaaaatatatatt 253369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 662634 - 662489
Alignment:
Q  18 aaatgtcatccgatccaaaataaaaattacatgcaattcagtttgg-----atgactattctnnnnnnnttcgaactaatctgtttcaaatatatgagat 112  Q
    ||||||||||||||||||||||||||| ||||||  ||| ||||||     ||||| |||||       | | |||| ||| | | |||| ||||| | |    
T  662634 aaatgtcatccgatccaaaataaaaataacatgcggttcggtttggtttgaatgacaattctaaaataatccaaactgatccgatccaaacatatgcggt 662535  T
Q  113 tttatttggatcggtttttggatatccaaaatgcaaaatatgtatt 158  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||    
T  662534 tatatttggatcggtttttggatatccaaaatgcaaaatatatatt 662489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 848432 - 848287
Alignment:
Q  18 aaatgtcatccgatccaaaataaaaattacatgcaattcagtttgg-----atgactattctnnnnnnnttcgaactaatctgtttcaaatatatgagat 112  Q
    ||||||||||||||||||||||||||| ||||||  ||| ||||||     ||||| |||||       | | |||| ||| | | |||| ||||| | |    
T  848432 aaatgtcatccgatccaaaataaaaataacatgcggttcggtttggtttgaatgacaattctaaaataatccaaactgatccgatccaaacatatgcggt 848333  T
Q  113 tttatttggatcggtttttggatatccaaaatgcaaaatatgtatt 158  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||    
T  848332 tatatttggatcggtttttggatatccaaaatgcaaaatatatatt 848287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 492
Target Start/End: Original strand, 12523123 - 12523313
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| |||||||||||| ||  | |||| ||| ||| || |||| |||||||||||||||| ||||||  ||||||||||| |||||||| |||    
T  12523123 gtgcaatatataagattaaaaactaataaacaacataataatgcaatata-taatactaataaaagaataaatacatattaatattttcttttgcgattc 12523221  T
Q  406 aattcggtttg-----gttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaat 492  Q
      |||| ||||     ||||||||||||| || | ||||  ||||||||  || || |||||||||||||| ||| || | |||| ||||||    
T  12523222 ggttcgctttgattctgttttgaaaaaataatctaaaattcgatccgattctaacgctttttacaaaacaatatctaagcgcattcaaaaat 12523313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 512
Target Start/End: Complemental strand, 32907052 - 32906886
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttt----------tgaaaaaatgatatgaaatctgatc 445  Q
    ||||||||||||||| | |||||||| ||||| || ||||||||||||||  ||||||| |||||          ||||||  ||||  |||||| || |    
T  32907052 ataatactaataaaataataaataagaattaaaatctacttttgcggttcggttcggttcggtttggttcggttttgaaaatgtgatccgaaatccgaac 32906953  T
Q  446 cgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    | ||| ||||||||||  |||||||||||||||||||||  |||||| | || ||||||||||||||    
T  32906952 caatcatagcggttttgccaaaacaacatccaaacacatccaaaaatattcggttttttgcggtttt 32906886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 435 - 512
Target Start/End: Original strand, 26721314 - 26721391
Alignment:
Q  435 gaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    ||||||||||  |||| ||||||||||| ||||||||| |||||||||||  |||||| | ||||||||| |||||||    
T  26721314 gaaatctgatttgatcatagcggtttttccaaaacaacgtccaaacacatccaaaaatattcgattttttacggtttt 26721391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 12522896 - 12522989
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttacttctttcaaagaatataatatttt 193  Q
    ||||||||||   ||| |||||||| ||||||| ||||| ||||||||||||||| || |  ||||||||||| |||  ||||||||||||||||    
T  12522896 caaatatatgcagtttaatttggataggtttttagatattcaaaatgcaaaatatttaattgtttatttactt-tttttaagaatataatatttt 12522989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 512
Target Start/End: Complemental strand, 13470917 - 13470847
Alignment:
Q  442 gatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    ||||||||| ||||| ||||| |||||||||||||||||||||  |||||| | || |||||||| |||||    
T  13470917 gatccgatcgtagcgttttttccaaaacaacatccaaacacatccaaaaatattcggttttttgctgtttt 13470847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 3290061 - 3290008
Alignment:
Q  178 aagaatataatatttttattaatattacacaaacaccgtaaaataataggtttg 231  Q
    ||||||||||| |||||||||||| ||||||||||  ||||||||||| |||||    
T  3290061 aagaatataatttttttattaataatacacaaacaaggtaaaataatatgtttg 3290008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 1265508 - 1265465
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaa 142  Q
    |||||||||| | ||| |||||||||||||||||||||||||||    
T  1265508 caaatatatgcggtttaatttggatcggtttttggatatccaaa 1265465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 6345699 - 6345656
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaa 142  Q
    |||||||||| | ||| |||||||||||||||||||||||||||    
T  6345699 caaatatatgcggtttaatttggatcggtttttggatatccaaa 6345656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 26720861 - 26720904
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaa 142  Q
    |||||||||| | ||| |||||||||||||||||||||||||||    
T  26720861 caaatatatgcggtttaatttggatcggtttttggatatccaaa 26720904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 31126964 - 31127007
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaa 142  Q
    |||||||||| | ||| |||||||||||||||||||||||||||    
T  31126964 caaatatatgcggtttaatttggatcggtttttggatatccaaa 31127007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 37948648 - 37948691
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaa 142  Q
    |||||||||| | ||| |||||||||||||||||||||||||||    
T  37948648 caaatatatgcggtttaatttggatcggtttttggatatccaaa 37948691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 43619743 - 43619786
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaa 142  Q
    |||||||||| | ||| |||||||||||||||||||||||||||    
T  43619743 caaatatatgcggtttaatttggatcggtttttggatatccaaa 43619786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 27805015 - 27805049
Alignment:
Q  17 aaaatgtcatccgatccaaaataaaaattacatgc 51  Q
    |||||||||||||||||||||||||||| ||||||    
T  27805015 aaaatgtcatccgatccaaaataaaaatcacatgc 27805049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 3774138 - 3774101
Alignment:
Q  194 tattaatattacacaaacaccgtaaaataataggtttg 231  Q
    |||||||||||||||||||  |||||||||||||||||    
T  3774138 tattaatattacacaaacagggtaaaataataggtttg 3774101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 4267668 - 4267631
Alignment:
Q  194 tattaatattacacaaacaccgtaaaataataggtttg 231  Q
    |||||||||||||||||||  |||||||||||||||||    
T  4267668 tattaatattacacaaacagggtaaaataataggtttg 4267631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 309 - 480
Target Start/End: Original strand, 8937705 - 8937879
Alignment:
Q  309 caatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttt-----tgcggt 403  Q
    ||||||| || ||||||||||||| |||||| |||||||||| |||| ||||| || |||||||||||||||||||||||| |||||||     | ||||    
T  8937705 caatatataatattaaaaaccaacaagcaacataacaattcaatata-taatattattaaaagagtaaataagtattaata-ttacttttacaattcggt 8937802  T
Q  404 tcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaac 480  Q
    | | || |||| |||| ||| |||||||| |||||||||||  |||| |||||||||||||||||||||||||||||    
T  8937803 ttagttgggttcggttatgagaaaatgatttgaaatctgatttgatcctagcggtttttacaaaacaacatccaaac 8937879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 307 - 512
Target Start/End: Original strand, 6714125 - 6714334
Alignment:
Q  307 tgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgc-----g 401  Q
    ||||||||| | |||||||||||||| |||||| |||  || || |||| |||||||||||||||| ||||||||||||||| |||| ||||||     |    
T  6714125 tgcaatatatatgattaaaaaccaacaagcaacataattatgcaatata-taatactaataaaagaataaataagtattaatctttatttttgcggtttg 6714223  T
Q  402 gttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattt 501  Q
    |||   |||||||  ||||||| ||| ||||  |||||| ||||||||| ||||||||||||||||| |||||||||||||||  ||| || | || |||    
T  6714224 gtttggttcggttcagttttgagaaagtgattcgaaatccgatccgatcctagcggtttttacaaaataacatccaaacacatccaaatatattcggttt 6714323  T
Q  502 tttgcggtttt 512  Q
    |||||||||||    
T  6714324 tttgcggtttt 6714334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 306 - 480
Target Start/End: Original strand, 31280095 - 31280263
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| ||||||||||   ||| |||||| ||| ||| || |||| |||||||||||||| | |||||||||||||||||||| |||||||||||    
T  31280095 gtgcaatatataagattaaaatttaacaagcaacataataatgcaatata-taatactaataaaaaaataaataagtattaatatttatttttgcggttc 31280193  T
Q  406 aattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaac 480  Q
         |||| |||||||||||| ||||   ||||| |||||||||||| || |||||||||||||||||||||||    
T  31280194 -----ggttcggttttgaaaaagtgatccaaaatccgatccgatcttaacgatttttacaaaacaacatccaaac 31280263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 356 - 512
Target Start/End: Complemental strand, 27392725 - 27392574
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagc 455  Q
    ||||||||||||||| | ||||||||||| || |||||||||||||||||     ||||||||||||||||    ||  |||||| ||||||||| ||||    
T  27392725 ataatactaataaaataataaataagtataaaaatttacttttgcggttc-----ggtttggttttgaaaacgcaatccgaaatccgatccgatcatagc 27392631  T
Q  456 ggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    ||||||| |||||||||||||||||||||  |||||| | || ||||||||| ||||    
T  27392630 ggttttttcaaaacaacatccaaacacatccaaaaatattcggttttttgcgatttt 27392574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 356 - 512
Target Start/End: Complemental strand, 1575987 - 1575826
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaatt-----cggtttggttttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||| | ||||||||||| || |||||||||||||||||  ||     ||||| |||||||||||    ||  |||||| |||||||||    
T  1575987 ataatactaataaaataataaataagtataaaaatttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatc 1575888  T
Q  451 ttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
     ||||||||||| |||||||||||||||||||||  |||||| | |  ||||||||||||||    
T  1575887 atagcggtttttccaaaacaacatccaaacacatccaaaaatattcagttttttgcggtttt 1575826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 512
Target Start/End: Original strand, 29987909 - 29988104
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttc 405  Q
    |||||||||| |||||||||| ||||| |||||| ||| ||  || |||| |||||||||||||| | |||||||||||| ||||||||||||||| |||    
T  29987909 gtgcaatatataagattaaaatccaacaagcaacataataaagcaatata-taatactaataaaaaaataaataagtattcatatttacttttgcgattc 29988007  T
Q  406 aattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttg 505  Q
              |||||||| ||| ||||  |||||||||||  ||| ||   ||||||||||||||||||||||||||||  |||||| | | ||||||||    
T  29988008 ----------ggttttgagaaagtgatccgaaatctgatcgaatcctaatagtttttacaaaacaacatccaaacacatccaaaaatattctattttttg 29988097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 356 - 512
Target Start/End: Original strand, 323567 - 323728
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggtt-----ttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||| | |||||||| ||||| || ||||||||||||||  ||| ||||||||     |||||||  ||||  |||||| || || |||    
T  323567 ataatactaataaaataataaataagaattaaaatctacttttgcggttcggttctgtttggttcggttttgaaaaggtgatccgaaatccgaaccaatc 323666  T
Q  451 ttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
     ||||||||||  |||||||||||||||||||||  |||||| | || ||||||||||||||    
T  323667 atagcggttttgccaaaacaacatccaaacacatccaaaaatattcggttttttgcggtttt 323728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 31279867 - 31280002
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttact-tctttcaaagaatataa----tatttt 193  Q
    |||| ||||| ||||  |||||||||| |||||||| |||||||||||||||||  |||| ||||||||||| | |||  ||||||||||    ||||      
T  31279867 caaacatatgcgattgaatttggatcgatttttggacatccaaaatgcaaaata--tatttttttatttactcttttttgaagaatataatttttattaa 31279964  T
Q  194 tattaatattacacaaacaccgtaaaataataggtttg 231  Q
    |||||||||||||||||||| |||||||||||||||||    
T  31279965 tattaatattacacaaacacggtaaaataataggtttg 31280002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 356 - 516
Target Start/End: Complemental strand, 28694822 - 28694667
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagc 455  Q
    ||||||||||||||| | || |||||||| || ||||||| |||||||||     ||||||||||||||||    ||  ||||||  |||||||| ||||    
T  28694822 ataatactaataaaataatatataagtatgaaaatttactattgcggttc-----ggtttggttttgaaaacgcaatccgaaatccaatccgatcatagc 28694728  T
Q  456 ggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttttgat 516  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||| | |||||||||    
T  28694727 ggtttttccataacaacatccaaacacataaaaaaatattcgattttttacagtttttgat 28694667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 306 - 480
Target Start/End: Original strand, 36582438 - 36582604
Alignment:
Q  306 gtgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtat---taatatttacttttgcgg 402  Q
    |||||||||| ||||||||||   ||| |||||| ||| ||| || |||| ||||  |||||||||| |||||||||||   ||||||||| ||||||||    
T  36582438 gtgcaatatataagattaaaatttaacaagcaacataataatgcaatata-taatggtaataaaagaataaataagtatgagtaatatttatttttgcgg 36582536  T
Q  403 ttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaac 480  Q
    |||          |||||||||||| ||||  |||||| |||| ||||||||||||||||||||||||||||||||||    
T  36582537 ttc----------ggttttgaaaaagtgatccgaaatccgatcagatcttagcggtttttacaaaacaacatccaaac 36582604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 8080926 - 8080872
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatat 153  Q
    |||||||||| | ||| ||||||||||||||||||||||||||||||||||||||    
T  8080926 caaatatatgcggtttaatttggatcggtttttggatatccaaaatgcaaaatat 8080872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 512
Target Start/End: Original strand, 36482602 - 36482748
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagc 455  Q
    ||||||||||||||| | ||||||||| | || |||||||||||||||||          ||||||||||| |  ||  |||| | ||||||||| |||     
T  36482602 ataatactaataaaataataaataagtgtaaaaatttacttttgcggttc----------ggttttgaaaagacaatccgaaaaccgatccgatcatagt 36482691  T
Q  456 ggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    |||||||  ||||||||||||||||||||  |||||| | |||||||||||||||||    
T  36482692 ggtttttctaaaacaacatccaaacacatccaaaaatattcgattttttgcggtttt 36482748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 474
Target Start/End: Complemental strand, 40303755 - 40303675
Alignment:
Q  389 atttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacat 474  Q
    ||||||||||||||||| ||||      |||||||||||||||| |||||||  |||| ||||||| |||||||||||||||||||    
T  40303755 atttacttttgcggttcgattc-----agttttgaaaaaatgatctgaaatccaatccaatcttagtggtttttacaaaacaacat 40303675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 419
Target Start/End: Complemental strand, 10286551 - 10286488
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggtt 419  Q
    ||||||||||||||| | |||||||| ||||| || ||||||||||||||  ||||||||||||    
T  10286551 ataatactaataaaataataaataagaattaaaatctacttttgcggttcggttcggtttggtt 10286488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 8937468 - 8937610
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaa-tatgtattcttttatttacttctttcaaagaa---tataatattttt 194  Q
    ||||||||||   ||| ||||||||| |||| ||||||| |||||| ||||| ||| |  | |||||||||||| ||||||| ||   |||||| |||||    
T  8937468 caaatatatgcagtttaatttggatcagtttctggatatacaaaatacaaaaatatattattttttatttacttttttcaaaaaaatatataattttttt 8937567  T
Q  195 attaatatta------cacaaacaccgtaaaataataggtttg 231  Q
    ||||||||||      ||||||||| |||||||||||||||||    
T  8937568 attaatattaattttacacaaacactgtaaaataataggtttg 8937610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 27856691 - 27856788
Alignment:
Q  135 tatccaaaatgcaaaatatgtattcttttatttacttctttcaaagaatataatatttttattaa------tattacacaaacaccgtaaaataataggt 228  Q
    ||||||||||||||||||| |    |||||||||||| |||  ||||||||||| ||||||||||      |||||||||||||| ||||||||||| ||    
T  27856691 tatccaaaatgcaaaatattt----ttttatttacttttttttaagaatataatttttttattaatattattattacacaaacacagtaaaataataagt 27856786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 36582209 - 36582345
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttact-tctttcaaagaatataa------tatt 191  Q
    |||||||||| | ||| |||||||||| |||||||| || || |||||||||||  |||| ||||||||||| | |||  ||||||||||      ||||    
T  36582209 caaatatatgcgttttaatttggatcgatttttggacattcagaatgcaaaata--tatt-ttttatttactcttttttgaagaatataaattttttatt 36582305  T
Q  192 tttattaatattacacaaacaccgtaaaataataggtttg 231  Q
      |||||||||||||||| ||| |||||||||||||||||    
T  36582306 aatattaatattacacaatcacggtaaaataataggtttg 36582345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 512
Target Start/End: Complemental strand, 10286457 - 10286397
Alignment:
Q  452 tagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgcggtttt 512  Q
    ||||||||||  |||||||||||||||||||||  |||||| | || ||||||||||||||    
T  10286457 tagcggttttgccaaaacaacatccaaacacatccaaaaatattcggttttttgcggtttt 10286397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 1576246 - 1576203
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaa 142  Q
    |||||||||| | ||| |||||||||||||||||||||||||||    
T  1576246 caaatatatgcggtttaatttggatcggtttttggatatccaaa 1576203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 27392987 - 27392944
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaa 142  Q
    |||||||||| | ||| |||||||||||||||||||||||||||    
T  27392987 caaatatatgcggtttaatttggatcggtttttggatatccaaa 27392944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 29987691 - 29987745
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatat 153  Q
    |||||||||| | ||| |||||||| |||||| ||||| ||||||||||||||||    
T  29987691 caaatatatgtggtttaatttggattggttttaggatacccaaaatgcaaaatat 29987745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 8937381 - 8937413
Alignment:
Q  17 aaaatgtcatccgatccaaaataaaaattacat 49  Q
    |||||||||||||||||||||||||||| ||||    
T  8937381 aaaatgtcatccgatccaaaataaaaatcacat 8937413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 307 - 511
Target Start/End: Complemental strand, 5677 - 5474
Alignment:
Q  307 tgcaatatagaagattaaaaaccaaccagcaacgtaacaattcactataataatactaataaaagagtaaataagtattaatatttacttttgcggttca 406  Q
    ||||||||| ||||||||||   ||| |||||| ||| ||| || |||| |||||||||||||||| || |||||||||||||||| ||||||  ||||     
T  5677 tgcaatatataagattaaaagttaacaagcaacataataatgcaatata-taatactaataaaagaatagataagtattaatatttgcttttgttgttcg 5579  T
Q  407 attcggtttggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttgc 506  Q
     |  ||||||||||||||||| |||| | ||||| ||||||||| ||||| || |||||||||||||||||| | |||  |||||| |  | ||||||||    
T  5578 gtgtggtttggttttgaaaaagtgatcttaaatccgatccgatcctagcgattcttacaaaacaacatccaagcgcatccaaaaatatttggttttttgc 5479  T
Q  507 ggttt 511  Q
    |||||    
T  5478 ggttt 5474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 5891 - 5854
Alignment:
Q  116 atttggatcggtttttggatatccaaaatgcaaaatat 153  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  5891 atttggatcggcttttggatatccaaaatacaaaatat 5854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 352 - 505
Target Start/End: Complemental strand, 15628 - 15480
Alignment:
Q  352 tataataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttttgaaaaaatgatatgaaatctgatccgatct 451  Q
    ||||||| ||||||||||||| ||||||||| | ||||||||||||| |||| |     ||||||||||||||||| | ||  ||||||| ||||||||     
T  15628 tataatagtactaataaaagaataaataagtgtcaatatttacttttacggtcc-----ggtttggttttgaaaaagttatccgaaatctaatccgatcc 15534  T
Q  452 tagcggtttttacaaaacaacatccaaacacatttaaaaatttccgattttttg 505  Q
    ||||  |||||||||||||||| |||||| ||| ||||||| | | ||||||||    
T  15533 tagctatttttacaaaacaacaaccaaacgcatctaaaaatattcaattttttg 15480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 356 - 479
Target Start/End: Original strand, 1228 - 1356
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggttt-----ggttttgaaaaaatgatatgaaatctgatccgatc 450  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||||   ||||||||     | |||||||||| ||||  |||||| ||| |||||    
T  1228 ataatactaataaaagaatatataagtattaatatttatttttgcggtttggttcggtttaattcgattttgaaaaagtgatccgaaatccgattcgatc 1327  T
Q  451 ttagcggtttttacaaaacaacatccaaa 479  Q
    |||||||| |||||||||||| |||||||    
T  1328 ttagcggtgtttacaaaacaatatccaaa 1356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 969 - 1074
Alignment:
Q  99 caaatatatgagattttatttggatcggtttttggatatccaaaatgcaaaatatgtattcttttatttact-tctttcaaagaatataatatt-tttat 196  Q
    |||||||||| | ||| ||||||||||||||||||| |||||||||||||||||  |||| |||||||| || | |||  ||||||||||| || |||||    
T  969 caaatatatgcggtttaatttggatcggtttttggacatccaaaatgcaaaata--tatttttttattttctcttttttgaagaatataattttgtttat 1066  T
Q  197 taatatta 204  Q
    ||||||||    
T  1067 taatatta 1074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 484
Target Start/End: Original strand, 47783 - 47851
Alignment:
Q  416 ggttttgaaaaaatgatatgaaatctgatccgatcttagcggtttttacaaaacaacatccaaacacat 484  Q
    |||||||| ||| ||||  |||||| |||| |||| ||||| |||||||||||||||||||||||||||    
T  47783 ggttttgagaaagtgatccgaaatccgatctgatcatagcgatttttacaaaacaacatccaaacacat 47851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 420
Target Start/End: Complemental strand, 16315 - 16251
Alignment:
Q  356 ataatactaataaaagagtaaataagtattaatatttacttttgcggttcaattcggtttggttt 420  Q
    ||||||||||||||| | |||||| ||||||| ||||||||| |  ||||  |||||||||||||    
T  16315 ataatactaataaaataataaatatgtattaaaatttactttagttgttcgtttcggtttggttt 16251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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