View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14259_low_5 (Length: 505)
Name: NF14259_low_5
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14259_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 13 - 492
Target Start/End: Original strand, 18741471 - 18741951
Alignment:
| Q |
13 |
acttgacaaatttgtcgtcaagtaaccattacattgtattacatgtgattcaacaagattttt-catttgttgttcagaaatagnnnnnnnnnntcacat |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||| || |||||| |
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| T |
18741471 |
acttgacaaatttgtcgtcaagtaaccattacattgtattacctatgattcaacaagattttttcatttgttgttcagaaaaagaaaaaaaaaatcacat |
18741570 |
T |
|
| Q |
112 |
ttatcacatactctttatctcattctttctcaaggtgtcaatggggtggatgtgtgtccatgaaacaattttcaactattaatgtcgtcaaatttaactt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18741571 |
ttatcacatactctttatctcattctttctcaaggtgtcaatggggtggatgtgtgtccatgaaacaattttcaactattaatgtcgtcaaatttaactt |
18741670 |
T |
|
| Q |
212 |
ggtttatagaccatacacacccacggatttttcctatgcaagcattctaattagttattatagtataccagtctagtctttgttgtaacaatacatgcat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
18741671 |
ggtttatagaccatacacacccacggatttttcctatgcaagcattctaatttgttattatagcataccagtctagtctttgttgtaacaatacatgcat |
18741770 |
T |
|
| Q |
312 |
atgcatatgtaagatgccaaagccaatttgttattgtaaaagttatgaatgaattttctgacttacatataattagagttgcaggaagatggcctctata |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18741771 |
atgcatatgtaagatgccaaagccaatttgttattgtaaaagttatgaatgaactttctgacttacatataattagagttgcaggaagatggcctctata |
18741870 |
T |
|
| Q |
412 |
cagaagaagcaccagtagcttttgaattttcattttcttcctgccatatcaagcaatatagtcattattttgtacataatg |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18741871 |
cagaagaagcaccagtagcttttgaattttcattttcttcctgccatatcaagcaatatagttattattttgtacataatg |
18741951 |
T |
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