View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14259_low_7 (Length: 461)
Name: NF14259_low_7
Description: NF14259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14259_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 117 - 441
Target Start/End: Complemental strand, 29653545 - 29653223
Alignment:
| Q |
117 |
tagcttcaaagtcactccaagataataaccttacacctccaccactcagaatcaaacaaagacattatatatttcattatttaaaaacatcttaaggtaa |
216 |
Q |
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| T |
29653545 |
tagcttcaaagtctctccaagaaaataaccttacacctcaaccactcggaatcaaacaaagacattatat--ttcattatttaaaaacatctcaagataa |
29653448 |
T |
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| Q |
217 |
acatcatcatcataatagtgttcttcaatgtgagcccaaactggcagatgcaaaattttgatctgctcacgacacctttccatcaaattttcactaagat |
316 |
Q |
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| T |
29653447 |
acaccatcatcataatagtgttcttcaatgtgagcccaaactggcagatgcaaaattttgatctgctcacgacacctttccctcaaattttcactaagat |
29653348 |
T |
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| Q |
317 |
aaacattacctcccttgatatcaagagattcaagaagcggacatcgatcaagaatcgcaatccatccaacttcgctacggtcatagtctttcatataaga |
416 |
Q |
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| T |
29653347 |
aaacattacctcccgtgatatcaagagattcaagaagcggacatcgatcaagaatcgcaagccatccaacttcgctacggtcatagtctttcatataaaa |
29653248 |
T |
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| Q |
417 |
gtggcttagtcgatatactgggtct |
441 |
Q |
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| T |
29653247 |
gtggcttagtcgatatactgggtct |
29653223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 184 - 437
Target Start/End: Complemental strand, 29681825 - 29681571
Alignment:
| Q |
184 |
tatatttcattatttaaaaacatcttaaggtaaacatcatcatcataatagtgttcttcaatgtgagc-ccaaactggcagatgcaaaattttgatctgc |
282 |
Q |
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| T |
29681825 |
tatatttcatcatttaaatacatctcaagataaatatgatcatcataatagtgttcttcaatacgagggcctaactgacagccgcaaatttttgatcttc |
29681726 |
T |
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| Q |
283 |
tcacgacacctttccatcaaattttcactaagataaacattacctcccttgatatcaagagattcaagaagcggacatcgatcaagaatcgcaatccatc |
382 |
Q |
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| T |
29681725 |
tcatgacacctttccttcaaattttcattaaaataaacattgcctccccgaatgtcaagagattcaagaagcagacatcgatcaagaatcgcaagccatc |
29681626 |
T |
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| Q |
383 |
caacttcgctacggtcatagtctttcatataagagtggcttagtcgatatactgg |
437 |
Q |
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| T |
29681625 |
caacttcgctgcggtcatagtctttcatataaaagtggcttagtcgatacactgg |
29681571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29653661 - 29653611
Alignment:
| Q |
1 |
atcaacgcaattagaaaaaacataacagtccatccgattactcaagcatgc |
51 |
Q |
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| T |
29653661 |
atcaacgcaattagaaaagacataacagtccatccaattactcaagcatgc |
29653611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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