View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14260_high_2 (Length: 438)
Name: NF14260_high_2
Description: NF14260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14260_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 21 - 422
Target Start/End: Original strand, 40623672 - 40624074
Alignment:
| Q |
21 |
actgtagagactatcataggcgtcataaggtctgtgaacttcattccaagactgcacaggtcacaattggtggacataagcaaaggttctgccagcaatg |
120 |
Q |
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| T |
40623672 |
actgtagagactatcataggcgtcataaggtctgtgaacttcattccaagactgcacaggtcacaattggtggacataagcaaaggttctgccagcaatg |
40623771 |
T |
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| Q |
121 |
tagcaggttcttttttcttatccataagctttttgtgtttcactttagtgtgctaatgagnnnnnnn-cctcttaattaatgcatttgtttattgtacct |
219 |
Q |
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| T |
40623772 |
tagcaggttcttttttcttatccataagctttttgtgtttcactttagtgtgctaatgagttttttttcctcttaattaatgcatttgtttattgtacct |
40623871 |
T |
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| Q |
220 |
attaaacttctaaattatgtgcatgtattcctattattcatgctaacttcataagtattctagctaattgctttttattatttttagaatcttaatttag |
319 |
Q |
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| T |
40623872 |
agtaaacttctaaattatgtgcatgtattcctattattcatgctaacttcataagtattctagctaattgctttttattatttttagaatcttaatttag |
40623971 |
T |
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| Q |
320 |
ccttcataagaagaggtaaaagcacaatccttaacaagattattaaaacacttgttaacgggttaattcagttaacaaaatgcaaattacagtcaacaca |
419 |
Q |
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| T |
40623972 |
ccttcataagaagaggtaaaagcacaatccttaacaagattattaaaacacttgttaacgggttaattcagttaacaaaatgcaaattacagtcaacata |
40624071 |
T |
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| Q |
420 |
tat |
422 |
Q |
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| T |
40624072 |
tat |
40624074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 27512047 - 27512125
Alignment:
| Q |
32 |
tatcataggcgtcataaggtctgtgaacttcattccaagactgcacaggtcacaattggtggacataagcaaaggttct |
110 |
Q |
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| T |
27512047 |
tatcatatgcgccataaggtctgcaaacttcattcaaagacttcacaggtgacacttggtggacataagcaaaggttct |
27512125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 45410624 - 45410729
Alignment:
| Q |
23 |
tgtagagactatcataggcgtcataaggtctgtgaacttcattccaagactgcacaggtcacaattggtggacataagcaaaggttctgccagcaatgta |
122 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||| || |||| |||||| |||| | ||| |||||||||||||| || |||| |
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| T |
45410624 |
tgtagagattatcataggcgtcataaggtttgtgaacttcattccaagactccagaggttacaatttgtggccttaaacaaaggttctgccaacagtgta |
45410723 |
T |
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| Q |
123 |
gcaggt |
128 |
Q |
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|||||| |
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| T |
45410724 |
gcaggt |
45410729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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