View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14260_high_6 (Length: 218)
Name: NF14260_high_6
Description: NF14260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14260_high_6 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 31434366 - 31434149
Alignment:
| Q |
1 |
agtatcttttttcctgggcattacgttcattgacaaagcaatatccccacgcatatggaccgtctggtgcacttgaccaccctcctgcatgttcaaaaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31434366 |
agtatcttttttcctgggcattacgttcattgacaaagcaatatccccacgcatatggaccgtctggtgcacttgaccaccctcctgcatgttcaaacac |
31434267 |
T |
|
| Q |
101 |
attagacaaataattgatcttgaattaattatcagttaatttcatgcactagggtttttccttacaaacaagatcacttgtgacttcttacaataattta |
200 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31434266 |
attagacaaataattgatgtttaattaattatcagttaatttcatgcactagggttttgcctcacaaacaagatcacttgtgacttcttacaatagttta |
31434167 |
T |
|
| Q |
201 |
aaagtatgaccgtgccat |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
31434166 |
aaagtatgaccgtgccat |
31434149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 31429424 - 31429353
Alignment:
| Q |
31 |
tgacaaagcaatatccccacgcatatggaccgtctggtgcacttgaccaccctcctgcatgttcaaaaacat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
31429424 |
tgacaaagcaatatccccacgcatatggtccgtctggtgcacttggccaccctcctgcatgttcataaacat |
31429353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 31444482 - 31444403
Alignment:
| Q |
24 |
cgttcattgacaaagcaatatccccacgcatatggaccgtctggtgcacttgaccaccctcctgcatgttcaaaaacatt |
103 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||| |||||| ||| |||||||||| ||| ||||||||||| |
|
|
| T |
31444482 |
cgttcattcacaaagcaatatccccacgcgtatggaccgtcaggtgcagttggccaccctcctacattctcaaaaacatt |
31444403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University