View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14260_low_1 (Length: 482)
Name: NF14260_low_1
Description: NF14260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14260_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 42395502 - 42395032
Alignment:
| Q |
1 |
atttttggtatgcaagaaggagagaaagtgttgaaggcttcacaatgttacttatacacaacagctggtcctattgctggtgttcttttcatctctaccc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42395502 |
atttttggtatgcaagaaggagagaaagtgttgaaggcttcacaatgttacttatacacaacagctggtcctattgctggtgttcttttcatctccaccc |
42395403 |
T |
|
| Q |
101 |
aaaaagttgcattttgtagtgaaagaccaataaccttctcttctgcatcaacgggagagtcgcgcaagataccgtacaaggtacgtaattattaagagtc |
200 |
Q |
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| T |
42395402 |
aaaaagttgcattttgtagtgaaagaccaataaccttctcttctgcatcaacgggagagtcgcgcaagataccgtacaaggtacgtaattattaagagtc |
42395303 |
T |
|
| Q |
201 |
ccacattgaatagatatataacaaatagtaatagagtttatgagtggagttgatttgcactt----tataatttggttttttacgattgatttaggttta |
296 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
42395302 |
ccacattgaatagttatataacaaatagtaatagagcttatgagtggagttgatttgcacttaatatataatttggttttttacgattgatttaggttca |
42395203 |
T |
|
| Q |
297 |
actcaaattttaagtgtagttaatctttatcgaccgacctcaactttaacatatcaaattaatactactagtttttgtaatcacatttgttgtattaact |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42395202 |
actcaaattttaagtgtagttaatctttatcgaccgacctcaactttaacatatcaaattaatactactagtttttgtaatcacatttgttgtattaact |
42395103 |
T |
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| Q |
397 |
gttttcatatcaaggatttgattaggtgcattttactatgcaggttttgataccaattgggaagataaaag |
467 |
Q |
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| T |
42395102 |
gttttcatatcaaggatttgattaggtgcattttactatgcaggttttgataccaattgggaagataaaag |
42395032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 29296021 - 29296167
Alignment:
| Q |
1 |
atttttggtatgcaagaaggagagaaagtgttgaaggcttcacaatgttacttatacacaacagctggtcctattgctggtgttcttttcatctctaccc |
100 |
Q |
| |
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|||||||| |||||||| | ||||||| | ||||| ||||| || || || ||||| || |||||||||||||||||||| |||| || ||||| ||| |
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| T |
29296021 |
atttttgggatgcaagaggaagagaaactcttgaaagcttctcagtgctatttatataccacagctggtcctattgctggaattctatttatctccaccg |
29296120 |
T |
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| Q |
101 |
aaaaagttgcattttgtagtgaaagaccaataaccttctcttctgca |
147 |
Q |
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|||||||||||| || |||||||| || | || ||||||||||||| |
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| T |
29296121 |
taaaagttgcattctgcagtgaaaggcctacaagcttctcttctgca |
29296167 |
T |
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