View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14260_low_3 (Length: 281)
Name: NF14260_low_3
Description: NF14260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14260_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 270
Target Start/End: Original strand, 23554103 - 23554363
Alignment:
| Q |
7 |
attatctaatgtggctaataatcataacgaacatactggaacctagaaataaaggatgatatataagattgtgtgaatcagtgataatgccttatactaa |
106 |
Q |
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| T |
23554103 |
attatctaatgtggctaataatcataacgaacatactggaacctagaaataaaggatgatatataagattgtgtgaatcagtgataatgccttaaactaa |
23554202 |
T |
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| Q |
107 |
tgtaaggctgtgttttttcctaacggcaaatataatactatttatgatgattaacatgataaattctataatttaaagatagttaggtaaatatacttgg |
206 |
Q |
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| T |
23554203 |
tgtaaggctgtgttttttcctaatggcaaatataa---tatttatgatgattaacatgataaattctataatttaaagatagttggctaaatatacttgg |
23554299 |
T |
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| Q |
207 |
gtctctcaaccattcgttcacgtttcgatttctatctttgattagtgtgtgtgtataactattt |
270 |
Q |
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| T |
23554300 |
gtctctcaaccattcgttcacgtttctatttctatctttgattagtgcgtgtgtataaccattt |
23554363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 23306820 - 23306914
Alignment:
| Q |
22 |
taataatcataacgaacatactggaacctagaaataaaggatgatatata--agattgtgtgaatcagtgataatgccttatactaatgtaaggc |
114 |
Q |
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| T |
23306820 |
taatgatcataacgaacataatgaaacctagaaataaaggctaatatatataagagtgtgtgaatcagtgtcaatgccttaaactaatgtaaggc |
23306914 |
T |
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