View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14260_low_4 (Length: 257)

Name: NF14260_low_4
Description: NF14260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14260_low_4
NF14260_low_4
[»] chr3 (12 HSPs)
chr3 (98-257)||(11830054-11830217)
chr3 (107-152)||(16876636-16876681)
chr3 (115-167)||(1418208-1418260)
chr3 (115-163)||(15761161-15761209)
chr3 (115-167)||(22918434-22918486)
chr3 (104-167)||(1425049-1425112)
chr3 (195-257)||(13178409-13178471)
chr3 (173-250)||(10878319-10878396)
chr3 (115-164)||(30378907-30378956)
chr3 (118-162)||(33100186-33100230)
chr3 (115-167)||(36641827-36641879)
chr3 (115-167)||(40145778-40145830)
[»] chr6 (5 HSPs)
chr6 (173-254)||(17206472-17206553)
chr6 (111-167)||(31130232-31130288)
chr6 (115-167)||(31473855-31473907)
chr6 (198-257)||(19730996-19731054)
chr6 (107-163)||(13758336-13758392)
[»] scaffold0004 (1 HSPs)
scaffold0004 (195-254)||(382319-382378)
[»] scaffold0711 (1 HSPs)
scaffold0711 (173-257)||(2163-2247)
[»] chr5 (9 HSPs)
chr5 (173-257)||(22747946-22748030)
chr5 (104-167)||(38915381-38915444)
chr5 (175-256)||(19570152-19570233)
chr5 (111-165)||(6769104-6769158)
chr5 (115-163)||(13382353-13382401)
chr5 (115-167)||(42879896-42879948)
chr5 (116-167)||(13490683-13490734)
chr5 (194-257)||(9823792-9823856)
chr5 (115-163)||(23963152-23963200)
[»] chr2 (14 HSPs)
chr2 (107-167)||(2554352-2554412)
chr2 (111-167)||(41302040-41302096)
chr2 (107-167)||(41825712-41825772)
chr2 (115-167)||(18580963-18581015)
chr2 (115-167)||(22575733-22575785)
chr2 (115-167)||(27861587-27861639)
chr2 (115-167)||(38698794-38698846)
chr2 (173-256)||(16152809-16152891)
chr2 (207-257)||(8685175-8685225)
chr2 (193-254)||(22132760-22132822)
chr2 (107-141)||(30387364-30387398)
chr2 (115-167)||(7444213-7444265)
chr2 (115-163)||(19686095-19686143)
chr2 (107-167)||(31548609-31548669)
[»] chr8 (9 HSPs)
chr8 (207-256)||(18565542-18565591)
chr8 (107-167)||(11647859-11647919)
chr8 (107-167)||(28374116-28374176)
chr8 (107-167)||(40971721-40971781)
chr8 (195-250)||(5825803-5825858)
chr8 (111-151)||(9137987-9138027)
chr8 (107-167)||(16730024-16730084)
chr8 (173-257)||(23433464-23433547)
chr8 (119-163)||(31597829-31597873)
[»] scaffold0084 (1 HSPs)
scaffold0084 (208-257)||(17997-18046)
[»] chr1 (6 HSPs)
chr1 (107-164)||(9023724-9023780)
chr1 (114-167)||(23663858-23663911)
chr1 (115-167)||(8737650-8737702)
chr1 (186-257)||(24006757-24006829)
chr1 (107-163)||(27430550-27430606)
chr1 (115-163)||(48999705-48999753)
[»] chr7 (4 HSPs)
chr7 (187-250)||(19843018-19843081)
chr7 (116-163)||(1623835-1623882)
chr7 (115-163)||(8389048-8389096)
chr7 (115-167)||(12383093-12383145)
[»] chr4 (8 HSPs)
chr4 (107-163)||(23935648-23935704)
chr4 (111-163)||(41508856-41508907)
chr4 (173-256)||(22317193-22317275)
chr4 (195-257)||(39981102-39981164)
chr4 (115-163)||(10094773-10094821)
chr4 (115-167)||(14032327-14032379)
chr4 (107-167)||(51890297-51890357)
chr4 (107-167)||(51890570-51890630)
[»] scaffold0041 (1 HSPs)
scaffold0041 (207-257)||(25974-26024)
[»] scaffold0002 (1 HSPs)
scaffold0002 (195-257)||(128517-128579)
[»] scaffold0062 (1 HSPs)
scaffold0062 (198-255)||(1202-1259)
[»] scaffold0211 (1 HSPs)
scaffold0211 (189-257)||(25250-25318)
[»] scaffold0093 (1 HSPs)
scaffold0093 (115-163)||(51150-51198)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 98 - 257
Target Start/End: Complemental strand, 11830217 - 11830054
Alignment:
Q  98 tatgattaatatgtaaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggcccttctttagcacaactgtttaagacttcttgc 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |||    
T  11830217 tatgattaatatgtaaggggcccttttctcatattatgcctaaggtctgtaaaactctaggaacggcccttcttaagcacaactgtttaagacttcctgc 11830118  T
Q  198 tctagga----atctacctaaagacttcttgcgcaagaacaactccaagagacttccctttgct 257  Q
    |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11830117 tctaggaatatatctacctaaagacttcttgcgcaagaacaactccaagagacttccctttgct 11830054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 16876681 - 16876636
Alignment:
Q  107 tatgtaaggggcccttttctcatattatgcctaaggtctgtaaaac 152  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||    
T  16876681 tatgtatggggcccttttctcatattatgcctaaggcctgtaaaac 16876636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 1418260 - 1418208
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||    
T  1418260 gggcccttttttcatattatgcctaaggcctgtaaaactctaggaacggccct 1418208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 15761161 - 15761209
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacgg 163  Q
    |||||||||| ||||||||||| ||||||||||||||| ||| ||||||    
T  15761161 gggcccttttttcatattatgcttaaggtctgtaaaactctaggaacgg 15761209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 22918434 - 22918486
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||| ||||| ||||||||||| ||||||||| ||| ||||||||||    
T  22918434 gggcccttttttcatactatgcctaaggcctgtaaaactctaggaacggccct 22918486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 1425049 - 1425112
Alignment:
Q  104 taatatgtaaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    ||||||| ||||||||||||  |||||| |||||||||| || |||||| ||| ||||||||||    
T  1425049 taatatgcaaggggccctttattcatatcatgcctaaggcctataaaactctaggaacggccct 1425112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 13178471 - 13178409
Alignment:
Q  195 tgctctaggaatctacctaaagacttcttgcgcaagaacaactccaagagacttccctttgct 257  Q
    |||||||||| |||||||||| ||||| ||| |||| | ||||||||||||||| | ||||||    
T  13178471 tgctctaggactctacctaaaaacttcctgctcaaggataactccaagagacttacatttgct 13178409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 10878396 - 10878319
Alignment:
Q  173 agcacaactgtttaagacttcttgctctaggaatctacctaaagacttcttgcgcaagaacaactccaagagacttcc 250  Q
    |||||||||| |||||||||| |||| || |   ||||||||||||||  ||| |||| |||||||||||| ||||||    
T  10878396 agcacaactgcttaagacttcctgctataaggcactacctaaagactttctgctcaaggacaactccaagatacttcc 10878319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 30378907 - 30378956
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggc 164  Q
    |||||||||| ||||| ||||||||||| ||||||||| ||| |||||||    
T  30378907 gggcccttttttcatactatgcctaaggcctgtaaaactctaggaacggc 30378956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 33100230 - 33100186
Alignment:
Q  118 cccttttctcatattatgcctaaggtctgtaaaacactaagaacg 162  Q
    ||||||||||||||||||||||||  ||||||||| ||| |||||    
T  33100230 cccttttctcatattatgcctaagacctgtaaaactctaggaacg 33100186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 36641827 - 36641879
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||| ||||| ||||||||||| | ||||||| ||| ||||||||||    
T  36641827 gggcccttttttcatactatgcctaaggcccgtaaaactctaggaacggccct 36641879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 40145778 - 40145830
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    ||||| |||||||||||||||||||||  ||||||||| ||| |||| |||||    
T  40145778 gggccattttctcatattatgcctaagacctgtaaaactctaggaacagccct 40145830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 17206472 - 17206553
Alignment:
Q  173 agcacaactgtttaagacttcttgctctaggaatctacctaaagacttcttgcgcaagaacaactccaagagacttcccttt 254  Q
    |||||||||  |||||||||| ||||||| ||  ||||||||||||||||||  |||| |||||||||||||||||||||||    
T  17206472 agcacaactacttaagacttcctgctctatgacactacctaaagacttcttgttcaaggacaactccaagagacttcccttt 17206553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 31130232 - 31130288
Alignment:
Q  111 taaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||| || ||||||||||||||||||||| || ||||||| ||||||||||||||    
T  31130232 taagggaccattttctcatattatgcctaagatccgtaaaactctaagaacggccct 31130288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 31473907 - 31473855
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||| ||||| ||||||||||| ||||||||| ||| ||||||||||    
T  31473907 gggcccttttttcatactatgcctaaggcctgtaaaactctaggaacggccct 31473855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 257
Target Start/End: Original strand, 19730996 - 19731054
Alignment:
Q  198 tctaggaatctacctaaagacttcttgcgcaagaacaactccaagagacttccctttgct 257  Q
    ||||||| |||||||||||||||| ||| |||| ||||||| |||||||||| |||||||    
T  19730996 tctaggactctacctaaagacttc-tgctcaaggacaactctaagagacttcactttgct 19731054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 13758392 - 13758336
Alignment:
Q  107 tatgtaaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacgg 163  Q
    ||||||||||||  ||||||||||||||||||| |  ||||||||| ||| ||||||    
T  13758392 tatgtaaggggcatttttctcatattatgcctacgacctgtaaaacgctatgaacgg 13758336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 382319 - 382378
Alignment:
Q  195 tgctctaggaatctacctaaagacttcttgcgcaagaacaactccaagagacttcccttt 254  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  382319 tgctctaggacactacctaaagacttcttgctcaagaacaactccaagagacttctcttt 382378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 2247 - 2163
Alignment:
Q  173 agcacaactgtttaagacttcttgctctaggaatctacctaaagacttcttgcgcaagaacaactccaagagacttccctttgct 257  Q
    ||||||||||   ||||||||||| |||||||  ||||||||||||||||||| |||| | || |||||||||||||| ||||||    
T  2247 agcacaactgcaaaagacttcttgatctaggacactacctaaagacttcttgctcaaggaaaattccaagagacttccgtttgct 2163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 257
Target Start/End: Original strand, 22747946 - 22748030
Alignment:
Q  173 agcacaactgtttaagacttcttgctctaggaatctacctaaagacttcttgcgcaagaacaactccaagagacttccctttgct 257  Q
    |||||||||| |||||||||| | ||| |||| |||||||||||||||||||| |||| | |||||  ||||||||| |||||||    
T  22747946 agcacaactgcttaagacttcctcctccaggactctacctaaagacttcttgctcaaggataactctcagagacttctctttgct 22748030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 167
Target Start/End: Complemental strand, 38915444 - 38915381
Alignment:
Q  104 taatatgtaaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    ||||||||||||||||||||  |||||| |||||||||| ||||||||| ||| ||||||||||    
T  38915444 taatatgtaaggggccctttattcatatcatgcctaaggcctgtaaaactctaggaacggccct 38915381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 19570233 - 19570152
Alignment:
Q  175 cacaactgtttaagacttcttgctctaggaatctacctaaagacttcttgcgcaagaacaactccaagagacttccctttgc 256  Q
    |||||||| | ||||||||||||| |||||  | ||||||||||||||| | | || |||||||||||| ||||||||||||    
T  19570233 cacaactgctcaagacttcttgctttaggacaccacctaaagacttcttactcgaggacaactccaagaaacttccctttgc 19570152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 6769158 - 6769104
Alignment:
Q  111 taaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggcc 165  Q
    ||||||| |||||||||||||||||| ||||| ||||||||| ||| ||||||||    
T  6769158 taaggggaccttttctcatattatgcttaaggcctgtaaaactctaggaacggcc 6769104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 13382401 - 13382353
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacgg 163  Q
    |||||||||| ||||||||||||||||| ||||||||| ||| ||||||    
T  13382401 gggcccttttttcatattatgcctaaggcctgtaaaactctaggaacgg 13382353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 42879896 - 42879948
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||| ||||||||||||||||| | ||||||| ||| ||||||||||    
T  42879896 gggcccttttttcatattatgcctaaggcccgtaaaactctaggaacggccct 42879948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 13490683 - 13490734
Alignment:
Q  116 ggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    ||||||||| ||||||||||||||||| ||||||||| |||  |||||||||    
T  13490683 ggcccttttttcatattatgcctaaggcctgtaaaactctagaaacggccct 13490734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 9823792 - 9823856
Alignment:
Q  194 ttgctctaggaatctacctaaagacttct-tgcgcaagaacaactccaagagacttccctttgct 257  Q
    |||||||||||  || |||||| |||||| | | |||| ||||||||||||||||||||||||||    
T  9823792 ttgctctaggagactgcctaaacacttctattctcaaggacaactccaagagacttccctttgct 9823856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 23963152 - 23963200
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacgg 163  Q
    |||||||||| ||||||||||||||||| || |||||| ||| ||||||    
T  23963152 gggcccttttttcatattatgcctaaggcctataaaactctaggaacgg 23963200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 2554352 - 2554412
Alignment:
Q  107 tatgtaaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    ||||||||||| |||||| ||||||||||||||||||| ||||||| ||| ||||||||||    
T  2554352 tatgtaaggggtccttttttcatattatgcctaaggtccgtaaaacgctaggaacggccct 2554412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 41302096 - 41302040
Alignment:
Q  111 taaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||||    
T  41302096 taaggggcccttttctcatattatgcctaaggcccgtaaaactctaggaacggccct 41302040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 41825772 - 41825712
Alignment:
Q  107 tatgtaaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    ||||||||||| |||||| ||||||||||||||||||| ||||||| ||| ||||||||||    
T  41825772 tatgtaaggggtccttttttcatattatgcctaaggtccgtaaaacgctaggaacggccct 41825712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 18581015 - 18580963
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||| ||||| ||||||||||| ||||||||| ||| ||||||||||    
T  18581015 gggcccttttttcatactatgcctaaggcctgtaaaactctaggaacggccct 18580963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 22575785 - 22575733
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||| ||||||||||||||||| | ||||||| ||| ||||||||||    
T  22575785 gggcccttttttcatattatgcctaaggcccgtaaaactctaggaacggccct 22575733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 27861639 - 27861587
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||| ||||||||||||||||| | ||||||| ||| ||||||||||    
T  27861639 gggcccttttttcatattatgcctaaggcccgtaaaactctaggaacggccct 27861587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 38698794 - 38698846
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||| ||||| ||||||||||| ||||||||| ||| ||||||||||    
T  38698794 gggcccttttttcatactatgcctaaggcctgtaaaactctaggaacggccct 38698846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 16152891 - 16152809
Alignment:
Q  173 agcacaactgtttaagacttcttgctctaggaatctacctaaagacttcttgcgcaagaacaactccaagagacttccctttgc 256  Q
    |||||| ||| |||| |||||| |||||||||  |||||||||||||||||   |||| | ||||||||||||||| |||||||    
T  16152891 agcacacctgcttaaaacttct-gctctaggacactacctaaagacttctttgccaaggaaaactccaagagactttcctttgc 16152809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 8685175 - 8685225
Alignment:
Q  207 ctacctaaagacttcttgcgcaagaacaactccaagagacttccctttgct 257  Q
    ||||||||||||||| |||  ||| |||||||||| |||||||||||||||    
T  8685175 ctacctaaagacttcctgctaaaggacaactccaatagacttccctttgct 8685225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 22132822 - 22132760
Alignment:
Q  193 cttgctctaggaatctacctaaagacttc-ttgcgcaagaacaactccaagagacttcccttt 254  Q
    |||||||||||   ||| ||||||||||| |||| |||| |||||||||||||||||||||||    
T  22132822 cttgctctaggtcactatctaaagacttccttgctcaaggacaactccaagagacttcccttt 22132760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 30387364 - 30387398
Alignment:
Q  107 tatgtaaggggcccttttctcatattatgcctaag 141  Q
    ||||||||||||| |||||||||||||||||||||    
T  30387364 tatgtaaggggccattttctcatattatgcctaag 30387398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 7444213 - 7444265
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||| ||||||||||||||||  | ||||||| ||| ||||||||||    
T  7444213 gggcccttttttcatattatgcctaagacccgtaaaactctaggaacggccct 7444265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 19686095 - 19686143
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacgg 163  Q
    |||||||||| ||||||||||||||||| | ||||||| ||| ||||||    
T  19686095 gggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgg 19686143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 31548669 - 31548609
Alignment:
Q  107 tatgtaaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||| |||||||||||||||| | |||||  ||||||||| |||  |||||||||    
T  31548669 tatgtaagggacccttttctcatattaagtctaagacctgtaaaactctagaaacggccct 31548609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 18565542 - 18565591
Alignment:
Q  207 ctacctaaagacttcttgcgcaagaacaactccaagagacttccctttgc 256  Q
    ||||||||||||||||||| |||| ||||||||||| |||||||||||||    
T  18565542 ctacctaaagacttcttgctcaaggacaactccaagcgacttccctttgc 18565591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 11647919 - 11647859
Alignment:
Q  107 tatgtaaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    ||||| |||||| |||||||||||||||| |||||||||||||||| ||| ||||| ||||    
T  11647919 tatgttaggggctcttttctcatattatgtctaaggtctgtaaaactctaggaacgaccct 11647859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 28374176 - 28374116
Alignment:
Q  107 tatgtaaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    ||||||||| || |||||||||||||||||||||||| || ||||| ||| ||||||||||    
T  28374176 tatgtaaggagctcttttctcatattatgcctaaggtttgaaaaactctaggaacggccct 28374116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 40971721 - 40971781
Alignment:
Q  107 tatgtaaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||| ||||||| ||||||||||||||||| | ||||||  ||| ||||||||||    
T  40971721 tatgtaagggacccttttttcatattatgcctaaggcccgtaaaatgctaggaacggccct 40971781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 5825803 - 5825858
Alignment:
Q  195 tgctctaggaatctacctaaagacttcttgcgcaagaacaactccaagagacttcc 250  Q
    |||||||||| | |||||||||||||| ||| |||| |||||||||| ||||||||    
T  5825803 tgctctaggactttacctaaagacttcatgctcaaggacaactccaaaagacttcc 5825858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 9137987 - 9138027
Alignment:
Q  111 taaggggcccttttctcatattatgcctaaggtctgtaaaa 151  Q
    |||||||||||||| ||||||||||||||||| | ||||||    
T  9137987 taaggggcccttttttcatattatgcctaaggcccgtaaaa 9138027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 16730024 - 16730084
Alignment:
Q  107 tatgtaaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||| || |||| ||||||||||||||||| | ||||||| ||| ||||| ||||    
T  16730024 tatgtaagggacctttttttcatattatgcctaaggcccgtaaaactctaggaacgaccct 16730084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 23433547 - 23433464
Alignment:
Q  173 agcacaactgtttaagacttcttgctctaggaatctacctaaagacttcttgcgcaagaacaactccaagagacttccctttgct 257  Q
    |||||| ||| ||||||||| | |||||||||  ||||||||||||||| | | |||| |||||||||| | |||||| ||||||    
T  23433547 agcacacctgcttaagacttat-gctctaggacactacctaaagacttccttctcaaggacaactccaataaacttccatttgct 23433464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 31597829 - 31597873
Alignment:
Q  119 ccttttctcatattatgcctaaggtctgtaaaacactaagaacgg 163  Q
    |||||| ||||||||||||||||| ||||||||| ||| ||||||    
T  31597829 ccttttttcatattatgcctaaggcctgtaaaactctaggaacgg 31597873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 18046 - 17997
Alignment:
Q  208 tacctaaagacttcttgcgcaagaacaactccaagagacttccctttgct 257  Q
    |||||||||||||||||| | || |||||||||||||||||| |||||||    
T  18046 tacctaaagacttcttgctctaggacaactccaagagacttctctttgct 17997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 9023724 - 9023780
Alignment:
Q  107 tatgtaaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggc 164  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||| ||| |||||||    
T  9023724 tatgtaaggggtccttt-ctcatattatgcctaaggtccgtaaaactctaggaacggc 9023780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 23663911 - 23663858
Alignment:
Q  114 ggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||| |||||| ||||||||||||||||| | ||||||| ||| ||||||||||    
T  23663911 ggggaccttttttcatattatgcctaaggcccgtaaaactctaggaacggccct 23663858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 8737702 - 8737650
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||| ||||||||||||||||| | ||||||| |||  |||||||||    
T  8737702 gggcccttttttcatattatgcctaaggcccgtaaaactctagaaacggccct 8737650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 24006829 - 24006757
Alignment:
Q  186 aagacttcttgctctaggaatctacctaaagacttc-ttgcgcaagaacaactccaagagacttccctttgct 257  Q
    |||||||| |||||||||||    | |||||||||| |||| |||| ||||||||||||||||| ||||||||    
T  24006829 aagacttcatgctctaggaaaactcgtaaagacttccttgctcaaggacaactccaagagactttcctttgct 24006757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 27430606 - 27430550
Alignment:
Q  107 tatgtaaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacgg 163  Q
    |||||||||| |  |||| ||||||||||||||||| ||||||||| ||| ||||||    
T  27430606 tatgtaagggccttttttttcatattatgcctaaggcctgtaaaactctaggaacgg 27430550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 48999705 - 48999753
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacgg 163  Q
    |||||||||| ||||||||||||||||| | ||||||| ||| ||||||    
T  48999705 gggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgg 48999753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 19843081 - 19843018
Alignment:
Q  187 agacttct-tgctctaggaatctacctaaagacttcttgcgcaagaacaactccaagagacttcc 250  Q
    |||||||| |||||||||| |||||||||||||||| ||| |||||||| || ||||||||||||    
T  19843081 agacttctatgctctaggactctacctaaagacttc-tgctcaagaacacctgcaagagacttcc 19843018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 1623835 - 1623882
Alignment:
Q  116 ggcccttttctcatattatgcctaaggtctgtaaaacactaagaacgg 163  Q
    ||||||||| ||||||||||||||||||| ||||||| ||| ||||||    
T  1623835 ggcccttttttcatattatgcctaaggtccgtaaaactctaggaacgg 1623882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 8389096 - 8389048
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacgg 163  Q
    |||||||||| ||||||||||||||||| | ||||||| ||| ||||||    
T  8389096 gggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgg 8389048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 12383093 - 12383145
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||| ||||| ||||||||||| | ||||||| ||| ||||||||||    
T  12383093 gggcccttttttcatactatgcctaaggcccgtaaaactctaggaacggccct 12383145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 23935704 - 23935648
Alignment:
Q  107 tatgtaaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacgg 163  Q
    ||||||||||||||| ||||||||||||| |||||| | ||||||| ||| ||||||    
T  23935704 tatgtaaggggccctcttctcatattatgtctaaggcccgtaaaactctaggaacgg 23935648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 41508907 - 41508856
Alignment:
Q  111 taaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacgg 163  Q
    ||||||| |||||| ||||||||||||||||||||||||||| ||| ||||||    
T  41508907 taagggggcctttt-tcatattatgcctaaggtctgtaaaactctaggaacgg 41508856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 22317275 - 22317193
Alignment:
Q  173 agcacaactgtttaagacttcttgctctaggaatctacctaaagacttcttgcgcaagaacaactccaagagacttccctttgc 256  Q
    |||||||||  |||||| ||| ||||||||||  ||| | |||| ||||| || |||| |||||||||||||||||||||||||    
T  22317275 agcacaacttcttaagaattcctgctctaggacactatccaaagtcttct-gctcaaggacaactccaagagacttccctttgc 22317193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 257
Target Start/End: Complemental strand, 39981164 - 39981102
Alignment:
Q  195 tgctctaggaatctacctaaagacttcttgcgcaagaacaactccaagagacttccctttgct 257  Q
    |||||||||| | |||||||||||||| ||| |||  |||||||||||| ||||||| |||||    
T  39981164 tgctctaggactttacctaaagacttcctgcccaaagacaactccaagaaacttcccattgct 39981102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 10094821 - 10094773
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacgg 163  Q
    |||||||||| ||||||||||||||||| | ||||||| ||| ||||||    
T  10094821 gggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgg 10094773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 14032379 - 14032327
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||| ||||| ||||||||||| | ||||||| ||| ||||||||||    
T  14032379 gggcccttttttcatactatgcctaaggcccgtaaaactctaggaacggccct 14032327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 51890357 - 51890297
Alignment:
Q  107 tatgtaaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||||||||||| |||||||||||| |||| |  |||||| ||| ||| ||||||    
T  51890357 tatgtaaggggcccttttatcatattatgcccaaggcccctaaaactctaggaatggccct 51890297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 51890630 - 51890570
Alignment:
Q  107 tatgtaaggggcccttttctcatattatgcctaaggtctgtaaaacactaagaacggccct 167  Q
    |||||||||||||||||| |||||||||||| |||| |  |||||| ||| ||| ||||||    
T  51890630 tatgtaaggggcccttttatcatattatgcccaaggcccctaaaactctaggaatggccct 51890570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 25974 - 26024
Alignment:
Q  207 ctacctaaagacttcttgcgcaagaacaactccaagagacttccctttgct 257  Q
    ||||||||||||||| ||| |||| ||||||||||||| ||||| ||||||    
T  25974 ctacctaaagacttcctgctcaaggacaactccaagagtcttccttttgct 26024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 128517 - 128579
Alignment:
Q  195 tgctctaggaatctacctaaagacttcttgcgcaagaacaactccaagagacttccctttgct 257  Q
    |||||||||| |||||||||| ||||| ||| |||| | ||||||||||||||| | ||||||    
T  128517 tgctctaggactctacctaaaaacttcctgctcaaggataactccaagagacttacatttgct 128579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 1202 - 1259
Alignment:
Q  198 tctaggaatctacctaaagacttcttgcgcaagaacaactccaagagacttccctttg 255  Q
    ||||||| | |||||||||||||| ||| |||| | |||||||||||||||| |||||    
T  1202 tctaggactatacctaaagacttcatgctcaaggaaaactccaagagacttctctttg 1259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 25250 - 25318
Alignment:
Q  189 acttcttgctctaggaatctacctaaagacttcttgcgcaagaacaactccaagagacttccctttgct 257  Q
    ||||| ||||| ||||  ||||||| ||||||||||| | || ||||||| |||||||||| |||||||    
T  25250 acttcctgctcaaggacactacctagagacttcttgctctaggacaactctaagagacttctctttgct 25318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 51150 - 51198
Alignment:
Q  115 gggcccttttctcatattatgcctaaggtctgtaaaacactaagaacgg 163  Q
    |||||||||| ||||||||||||||||| | ||||||| ||| ||||||    
T  51150 gggcccttttttcatattatgcctaaggcccgtaaaactctaggaacgg 51198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University