View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14261_low_1 (Length: 474)

Name: NF14261_low_1
Description: NF14261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14261_low_1
NF14261_low_1
[»] scaffold0648 (1 HSPs)
scaffold0648 (112-335)||(5895-6117)
[»] scaffold0274 (1 HSPs)
scaffold0274 (112-335)||(17341-17563)
[»] chr1 (9 HSPs)
chr1 (112-334)||(41426407-41426628)
chr1 (112-331)||(41431800-41432019)
chr1 (112-325)||(41442407-41442620)
chr1 (18-219)||(41453572-41453772)
chr1 (179-279)||(41448905-41449006)
chr1 (401-474)||(41456820-41456893)
chr1 (138-217)||(52472986-52473066)
chr1 (268-324)||(41449170-41449226)
chr1 (112-218)||(7238212-7238327)
[»] chr2 (3 HSPs)
chr2 (114-332)||(33370088-33370308)
chr2 (116-335)||(33363748-33363967)
chr2 (112-267)||(5839238-5839393)
[»] chr7 (1 HSPs)
chr7 (112-284)||(7762930-7763102)
[»] chr8 (1 HSPs)
chr8 (118-273)||(21223810-21223965)
[»] chr4 (1 HSPs)
chr4 (144-272)||(1004661-1004789)


Alignment Details
Target: scaffold0648 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 112 - 335
Target Start/End: Original strand, 5895 - 6117
Alignment:
Q  112 ctcatcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtctt 211  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5895 ctcatcagatacaatatttgtgagagtctgtgaatcaagaatggatctcatgagggctgtgattattggagcagaagggactccttaccatgacggtctt 5994  T
Q  212 ttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgagaatactttatctagctgacattattttcttgttcactct 311  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || || |||| |||||||||||||||    
T  5995 ttcttttttgatgtttactttccccctgaatatcccaatgaacccccggtatgtggttgagaatactttatttggcagatatta-tttcttgttcactct 6093  T
Q  312 ttttaattcaattccgacaaatgg 335  Q
    ||||||||||||||||||||||||    
T  6094 ttttaattcaattccgacaaatgg 6117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 112 - 335
Target Start/End: Complemental strand, 17563 - 17341
Alignment:
Q  112 ctcatcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtctt 211  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17563 ctcatcagatacaatatttgtgagagtctgtgaatcaagaatggatctcatgagggctgtgattattggagcagaagggactccttaccatgacggtctt 17464  T
Q  212 ttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgagaatactttatctagctgacattattttcttgttcactct 311  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || || |||| |||||||||||||||    
T  17463 ttcttttttgatgtttactttccccctgaatatcccaatgaacccccggtatgtggttgagaatactttatttggcagatatta-tttcttgttcactct 17365  T
Q  312 ttttaattcaattccgacaaatgg 335  Q
    ||||||||||||||||||||||||    
T  17364 ttttaattcaattccgacaaatgg 17341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 112 - 334
Target Start/End: Original strand, 41426407 - 41426628
Alignment:
Q  112 ctcatcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtctt 211  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  41426407 ctcatcagatacaatatttgtgagagtctgtgaatcaaggatggatctcatgagggctgtgattattggagcaaaagggactccttaccatgacagtctt 41426506  T
Q  212 ttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgagaatactttatctagctgacattattttcttgttcactct 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||| |||||||||||||||    
T  41426507 ttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgagaatactttatttggccgatatta-tttcttgttcactct 41426605  T
Q  312 ttttaattcaattccgacaaatg 334  Q
    |||||||||||||||||||||||    
T  41426606 ttttaattcaattccgacaaatg 41426628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 112 - 331
Target Start/End: Original strand, 41431800 - 41432019
Alignment:
Q  112 ctcatcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtctt 211  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41431800 ctcatcagatacaatatttgtgagagtcttcgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtctt 41431899  T
Q  212 ttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgagaatactttatctagctgacattattttcttgttcactct 311  Q
    |||||||||||||||||||| ||||||  ||||||||||| |||||||||| ||||||||  |||||||||||  ||||||||||||||||||||||||     
T  41431900 ttcttttttgatgtttacttcccccctaaatatcccaatgtacccccggtacgtggttgatgatactttatctgactgacattattttcttgttcactcc 41431999  T
Q  312 ttttaattcaattccgacaa 331  Q
    ||||||||||||||||||||    
T  41432000 ttttaattcaattccgacaa 41432019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 112 - 325
Target Start/End: Original strand, 41442407 - 41442620
Alignment:
Q  112 ctcatcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtctt 211  Q
    ||||||| ||||||||||||||||||| |  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41442407 ctcatcaaatacaatatttgtgagagtctgcgaatcaaggatggatctcttgagagctgtgattattggagcagaagggactccttaccatgacggtctt 41442506  T
Q  212 ttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgagaatactttatctagctgacattattttcttgttcactct 311  Q
    ||||||||||||||  |||||||  |||| |||||||||| |||||||||| |||||| ||||||||||||||  | ||| || |||||||||| |||||    
T  41442507 ttcttttttgatgtacactttccaactggctatcccaatgtacccccggtacgtggttaagaatactttatctgacagacgttgttttcttgttaactct 41442606  T
Q  312 ttttaattcaattc 325  Q
    ||||||||||||||    
T  41442607 ttttaattcaattc 41442620  T

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Target: chr1; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 41453572 - 41453772
Alignment:
Q  18 ggatcaagaacttttaattaccatagtgtgaaacatgattatggtatatttctcaatcttatcttcttcnnnnnnnnnnnnnnnnnnnnnaatactcatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      ||| ||||||    
T  41453572 ggatcaagaacttttaattaccatagtgtgaaacatgattatggtatatttctcaatcttatcttctt-tttttttttttgactttttttaatgctcatc 41453670  T
Q  118 agatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtcttttcttt 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  41453671 agatacaatatttgtgagagtctatgaatcaaggatggatctcttgagggctgtgattattggagcagaagagactccttaccatgacggtcttttattt 41453770  T
Q  218 tt 219  Q
    ||    
T  41453771 tt 41453772  T

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Target: chr1; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 179 - 279
Target Start/End: Original strand, 41448905 - 41449006
Alignment:
Q  179 ggagcagaagggactccttaccatgacggtcttttcttttttgatgtttacttt-ccccctggatatcccaatgaacccccggtatgtggttgagaatac 277  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| ||||    
T  41448905 ggagcagaagagactccttaccataacggtcttttcttttttgatgtttactttcccccctggatatcccaatgtacccccagtatgtggttgaggatac 41449004  T
Q  278 tt 279  Q
    ||    
T  41449005 tt 41449006  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 401 - 474
Target Start/End: Original strand, 41456820 - 41456893
Alignment:
Q  401 acctacccacctctaaaccatcccctcgacctcactacttgcaaccgattccactacactgatcctacacaacc 474  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  41456820 acctacccacatctaaaccatcccctcgacctcacaacttgcaaccgattccactactctgatcttacacaacc 41456893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 52472986 - 52473066
Alignment:
Q  138 tttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactcctta-ccatgacggtcttttcttt 217  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| | |||||||||||| ||||    
T  52472986 tttatgaatcaaggatggatctcttgagggctgtaattattggagcagatggaactccttatcaatgacggtctttacttt 52473066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 41449170 - 41449226
Alignment:
Q  268 ttgagaatactttatctagctgacattattttcttgttcactctttttaattcaatt 324  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  41449170 ttgaggatactttatctagctgacaatattttcttgttcactctttttaatccaatt 41449226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 7238327 - 7238212
Alignment:
Q  112 ctcatcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagca---------gaagggactccttaccat 202  Q
    ||||| |||| ||||||||||  ||||||||||||||| |||| || ||  | ||||||| | ||||||||||         ||||||||| ||||||||    
T  7238327 ctcattagattcaatatttgttcgagtttatgaatcaatgatgaatgtcacgcgggctgtaactattggagcacaagggagtgaagggacttcttaccat 7238228  T
Q  203 gacggtcttttctttt 218  Q
    ||||||||||||||||    
T  7238227 gacggtcttttctttt 7238212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 114 - 332
Target Start/End: Original strand, 33370088 - 33370308
Alignment:
Q  114 catcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtctttt 213  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33370088 catcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagggctgtgattattggagcagaagggactccttaccatgatggtctttt 33370187  T
Q  214 cttttttgatgtttactttccccctggatatcccaatgaa--cccccggtatgtggttgagaatactttatctagctgacattattttcttgttcactct 311  Q
    |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||| |||||||||||  ||||| ||||||||| ||||||||     
T  33370188 cttttttgatgtttactttccccctggatatcccaatggacccccccggtatgtggttgaggatactttatctgactgacgttattttctagttcactca 33370287  T
Q  312 ttttaattcaattccgacaaa 332  Q
    ||| |||||||||||||||||    
T  33370288 tttaaattcaattccgacaaa 33370308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 116 - 335
Target Start/End: Original strand, 33363748 - 33363967
Alignment:
Q  116 tcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtcttttct 215  Q
    ||||||||||||||||||||| | |  |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33363748 tcagatacaatatttgtgagaatcttcgaatcaaggatggatctcatgagagctgtgattattggagcagaagggactccttaccatgatggtcttttct 33363847  T
Q  216 tttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgagaatactttatctagctgacattattttcttgttcactcttttt 315  Q
    |||||||||||||||| ||||||  ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  33363848 tttttgatgtttacttcccccctaaatatcccaatgtacccccggtacgtggttgagaatactttatttagctgacattattttcttgtgcactcttttt 33363947  T
Q  316 aattcaattccgacaaatgg 335  Q
    |||||||||| |||||||||    
T  33363948 aattcaattctgacaaatgg 33363967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 5839393 - 5839238
Alignment:
Q  112 ctcatcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtctt 211  Q
    |||||||||| ||||||||||  |||||||||||||||| ||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  5839393 ctcatcagattcaatatttgttcgagtttatgaatcaagaatggatctcatgagggctgtaattattggagcagacgggactccttaccatgacggtctt 5839294  T
Q  212 ttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtgg 267  Q
    |||||||| ||| ||||||| ||   ||| | |||||||| ||| |||||||||||    
T  5839293 ttctttttcgatctttacttacctggtggctttcccaatgtaccgccggtatgtgg 5839238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 8e-62; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 112 - 284
Target Start/End: Complemental strand, 7763102 - 7762930
Alignment:
Q  112 ctcatcagatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtctt 211  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||| ||||||    
T  7763102 ctcatcagatacaatatttgtgagagtctacgaatcaaggatggatctcatgagagctgtgattattggagcacaagggactccttaccatgatggtctt 7763003  T
Q  212 ttcttttttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgagaatactttatct 284  Q
    |||||||||||| | ||||||||||||| ||||||| |||||||||||||| |||||||| | ||||||||||    
T  7763002 ttcttttttgatttatactttccccctgaatatcccgatgaacccccggtacgtggttgaaactactttatct 7762930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 118 - 273
Target Start/End: Complemental strand, 21223965 - 21223810
Alignment:
Q  118 agatacaatatttgtgagagtttatgaatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtcttttcttt 217  Q
    |||| |||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||| || || ||||| ||||| || || ||||||    
T  21223965 agattcaatatttgtcagagtttatgaatcaagaatagatctgttgagggctgtgattattggagcagagggaaccccttatcatgatggcctattcttt 21223866  T
Q  218 tttgatgtttactttccccctggatatcccaatgaacccccggtatgtggttgaga 273  Q
    |||||| ||| |||||||  ||| | |||||||| ||| ||||||||  |||||||    
T  21223865 tttgattttttctttcccagtggctttcccaatgtacctccggtatgctgttgaga 21223810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 272
Target Start/End: Original strand, 1004661 - 1004789
Alignment:
Q  144 aatcaaggatggatctcttgagggctgtgattattggagcagaagggactccttaccatgacggtcttttcttttttgatgtttactttccccctggata 243  Q
    |||||| |||| |||| ||||||||||| ||||||||| || ||||||||||||||||  |||||||||||||||||||| ||||||| ||   |   ||    
T  1004661 aatcaaagatgaatctgttgagggctgtaattattggaccaaaagggactccttaccagcacggtcttttcttttttgatttttacttccctagtaacta 1004760  T
Q  244 tcccaatgaacccccggtatgtggttgag 272  Q
    ||||| || ||||||||||||| ||||||    
T  1004761 tcccattgtacccccggtatgtcgttgag 1004789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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