View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14261_low_2 (Length: 268)

Name: NF14261_low_2
Description: NF14261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14261_low_2
NF14261_low_2
[»] chr1 (1 HSPs)
chr1 (1-259)||(43099285-43099561)
[»] chr7 (7 HSPs)
chr7 (23-159)||(47367555-47367690)
chr7 (183-234)||(47367730-47367781)
chr7 (183-236)||(39438392-39438445)
chr7 (201-235)||(19929361-19929395)
chr7 (173-235)||(39425290-39425352)
chr7 (173-235)||(39456888-39456950)
chr7 (106-155)||(39438498-39438547)
[»] chr3 (5 HSPs)
chr3 (176-236)||(14349704-14349764)
chr3 (32-157)||(48446504-48446629)
chr3 (176-236)||(13464576-13464636)
chr3 (176-235)||(48446413-48446472)
chr3 (106-143)||(14349621-14349658)
[»] chr4 (1 HSPs)
chr4 (178-251)||(38490024-38490097)
[»] chr5 (1 HSPs)
chr5 (202-235)||(4288024-4288057)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 43099561 - 43099285
Alignment:
Q  1 attggtatttttaggctgagtgaaggtatatgatataactcccaaaaaattatttcatgaaaaa--ccactacatgtttttcaaaaaacatgaaataatt 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  43099561 attggtatttttaggctgagtgaaggtatatgatataactcccaaaaaaaattttcatgaaaaaaaccactacatgtttttcaaaaaacatgaaataatt 43099462  T
Q  99 gtcatcgtcaatcaaataaaagcttacatgttgtagagccccttgtacatgatgataat--------atat--------tttgagggtaggtatactctg 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        | ||        |||||||||||||||||||||    
T  43099461 gtcatcgtcaatcaaataaaagcttacatgttgtagagccccttgtacatgatgataatttcaaaaaacatttggtccctttgagggtaggtatactctg 43099362  T
Q  183 aattttcatagtctctagtacttttgaatgctgcataatatattttgcaaattccagctgatgttttgttcctatgc 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43099361 aattttcatagtctctagtacttttgaatgctgcataatatattttgcaaattccagctgatgttttgttcctatgc 43099285  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 47367555 - 47367690
Alignment:
Q  23 aaggtatatgatataactcccaaaa-aattatttcatgaaaaaccactacatgtttttcaaaaaacatgaaataattgtcatcgtcaatcaaataaaagc 121  Q
    ||||| ||||||||||||||||||  |||| ||||||||||||||||||||   ||  |||| ||||| || ||||| ||||| |||||||||||||||     
T  47367555 aaggtttatgatataactcccaaaccaattctttcatgaaaaaccactacacactt--caaataacataaattaattatcatcatcaatcaaataaaagt 47367652  T
Q  122 ttacatgttgtagagccccttgtacatgatgataatat 159  Q
    |||||  ||| ||||||||||||  |||| ||||||||    
T  47367653 ttacaatttggagagccccttgtggatgaagataatat 47367690  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 47367730 - 47367781
Alignment:
Q  183 aattttcatagtctctagtacttttgaatgctgcataatatattttgcaaat 234  Q
    |||| |||| |||||||||||||||||||| |||| ||||||||||||||||    
T  47367730 aattgtcatggtctctagtacttttgaatgttgcacaatatattttgcaaat 47367781  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 39438445 - 39438392
Alignment:
Q  183 aattttcatagtctctagtacttttgaatgctgcataatatattttgcaaattc 236  Q
    |||| ||||||| |||||||||||||||| || |||||||||||||| ||||||    
T  39438445 aattgtcatagtttctagtacttttgaattctccataatatattttgtaaattc 39438392  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 235
Target Start/End: Complemental strand, 19929395 - 19929361
Alignment:
Q  201 tacttttgaatgctgcataatatattttgcaaatt 235  Q
    ||||||||||| |||||||||||||||||||||||    
T  19929395 tacttttgaattctgcataatatattttgcaaatt 19929361  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 39425352 - 39425290
Alignment:
Q  173 gtatactctgaattttcatagtctctagtacttttgaatgctgcataatatattttgcaaatt 235  Q
    ||||||| | |||| ||||||| |||||||||||||||| || ||| |||||| |||||||||    
T  39425352 gtatactattaattctcatagtttctagtacttttgaattctccatgatatatattgcaaatt 39425290  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 39456888 - 39456950
Alignment:
Q  173 gtatactctgaattttcatagtctctagtacttttgaatgctgcataatatattttgcaaatt 235  Q
    ||||||| | |||| ||||||| |||||||||||||||| || ||| |||||| |||||||||    
T  39456888 gtatactattaattctcatagtttctagtacttttgaattctccatgatatatattgcaaatt 39456950  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 39438547 - 39438498
Alignment:
Q  106 tcaatcaaataaaagcttacatgttgtagagccccttgtacatgatgata 155  Q
    ||||||||||||||| |||||||| |||||||| |||||| |||| ||||    
T  39438547 tcaatcaaataaaagtttacatgtcgtagagcctcttgtatatgaagata 39438498  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 14349704 - 14349764
Alignment:
Q  176 tactctgaattttcatagtctctagtacttttgaatgctgcataatatattttgcaaattc 236  Q
    |||||| |||| |||| || |||||||||||||||||||||||||||||||||||||||||    
T  14349704 tactcttaattgtcatggtttctagtacttttgaatgctgcataatatattttgcaaattc 14349764  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 157
Target Start/End: Complemental strand, 48446629 - 48446504
Alignment:
Q  32 gatataactcccaaaaaat-tatttcatgaaaaaccactacatgtttttcaaaaaacatgaaataattgtcatcgtcaatcaaataaaagcttacatgtt 130  Q
    |||| |||||||||||||  | |||||||||  || | |||||||| |||||||| ||||   ||| ||||||| ||||||||||| ||| |||||||||    
T  48446629 gataaaactcccaaaaaaaatctttcatgaatcacaaatacatgttcttcaaaaa-catggcgtaactgtcatcctcaatcaaatagaagtttacatgtt 48446531  T
Q  131 gtagagccccttgtacatgatgataat 157  Q
    |||||||||||||| ||||| ||||||    
T  48446530 gtagagccccttgtgcatgaagataat 48446504  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 13464576 - 13464636
Alignment:
Q  176 tactctgaattttcatagtctctagtacttttgaatgctgcataatatattttgcaaattc 236  Q
    |||||| |||| |||| || |||||||| ||||||||||||||||||||||||||||||||    
T  13464576 tactcttaattgtcatggtttctagtacgtttgaatgctgcataatatattttgcaaattc 13464636  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 48446472 - 48446413
Alignment:
Q  176 tactctgaattttcatagtctctagtacttttgaatgctgcataatatattttgcaaatt 235  Q
    ||||||||||| |||| ||||| ||||| |||||||||||||||||||||||| ||||||    
T  48446472 tactctgaattgtcatggtctcgagtacgtttgaatgctgcataatatattttacaaatt 48446413  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 14349621 - 14349658
Alignment:
Q  106 tcaatcaaataaaagcttacatgttgtagagccccttg 143  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  14349621 tcaatcaaataaaagtttacatgttgtagagccccttg 14349658  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 38490024 - 38490097
Alignment:
Q  178 ctctgaattttcatagtctctagtacttttgaatgctgcataatatattttgcaaattccagctgatgttttgt 251  Q
    |||||||||||||| ||||||||||| |||||||| ||||||||||||| |||||| || | || |||||||||    
T  38490024 ctctgaattttcatggtctctagtacctttgaatggtgcataatatattctgcaaaatcgaactcatgttttgt 38490097  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 4288024 - 4288057
Alignment:
Q  202 acttttgaatgctgcataatatattttgcaaatt 235  Q
    |||||||||| |||||||||||||||||||||||    
T  4288024 acttttgaattctgcataatatattttgcaaatt 4288057  T

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