View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14262_high_3 (Length: 507)
Name: NF14262_high_3
Description: NF14262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14262_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Complemental strand, 2115737 - 2115253
Alignment:
| Q |
17 |
gttgataactccatatttggtgcaatttatgaattcaagcctccacc-gtatatgtgcaacaacaccttacatagaagtccacgttatgtaattgcgttt |
115 |
Q |
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| T |
2115737 |
gttgataactccatatttggtgcaatttatgaattcaagcctccacccgtatatgtgcaataacaccttacatagaagtccatgttatgtaattgcattt |
2115638 |
T |
|
| Q |
116 |
cgagggactataaccaaagcagactcagtttcacgtgatattgagttggatctccaatttctcaaaaatggacttcatcgaacttcacgctcagagatag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2115637 |
cgagggactataaccaaagcagactcagtttcacgtgatattgagttggatctccaatttctcaaaaatggacttcatcgaacttcacgctcagagatag |
2115538 |
T |
|
| Q |
216 |
ctatcggagctgtgagaaacatggtggctagtgttggtggtaatggttcgaatatatggttggctggtcactctctaggatctggcatggcattgcttgc |
315 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2115537 |
ctatcggagctgtgagaaacctggtggctagtgttagtggtaatggttcgaatatatggttggctggtcactctctaggatctggcatggcattgcttgc |
2115438 |
T |
|
| Q |
316 |
cgggaaaacattggctaaaaatggcacattcatcgagtcttttctttttaaccctccatttgcatctgctccaattgagagaattagaagtaagaaagtg |
415 |
Q |
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| T |
2115437 |
cgggaaaacattggctaaaaatggcacattcatcgagtcttttctttttaaccctccatttgcatctgctccaattgagagaattagaagtaagaaagtg |
2115338 |
T |
|
| Q |
416 |
aaacatagacttcgaattgctagcagcgtcattacagccggactcgccattgctatgaattcagacaagaaaagttcttcctttg |
500 |
Q |
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| T |
2115337 |
aaacatagacttcgaattgctagcagcgtcattacagctggactcgccattgctatgaattcggacaagaaaagttcttcctttg |
2115253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 11873303 - 11872925
Alignment:
| Q |
17 |
gttgataactccatatttggtgcaatttatgaattcaagcctccaccgtatatgtgcaacaacaccttacatagaagtccacgttatgtaattgcgtttc |
116 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||| | | || ||||| ||||||||||||||||||| |||||||||||||| |||| |
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| T |
11873303 |
gttgatcactccatatttggtgcaatttatgagttcaagcctccatcatcaatttgcaatgacaccttacatagaagtccgcgttatgtaattgcctttc |
11873204 |
T |
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| Q |
117 |
gagggactataaccaaagcagactcagtttcacgtgatattgagttggatctccaatttctcaaaaatggacttcatcgaacttcacgctcagagatagc |
216 |
Q |
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|||||||||||| || ||||| || | ||| ||| | | |||||| | ||| | | |||||||||||||||||||||||| || | ||||| |
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| T |
11873203 |
gagggactataaaagaaccagacacattaatacgcgatttccatttggattttgaatattgtagaaatggacttcatcgaacttcacgaccaaaaatagc |
11873104 |
T |
|
| Q |
217 |
tatcggagctgtgagaaacatggtggctagtgttggtggtaatggttcgaatatatggttggctggtcactctctaggatctggcatggcattgcttgcc |
316 |
Q |
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|||| |||||| ||||||||||||| || ||| || ||||||||| |||||||||||||| ||||| ||||| || || || |||||||||| |
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| T |
11873103 |
catcgaagctgtcagaaacatggtggatattgtagg------tggttcgaaaatatggttggctggccactccctaggttcaggaattgcattgcttgga |
11873010 |
T |
|
| Q |
317 |
gggaaaacattggctaaaaatggcacattcatcgagtcttttctttttaaccctccatttgcatctgctccaattgagagaatta |
401 |
Q |
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|| ||| | ||||||| || | || |||||| |||||||||||||| |||||||||||| |||||||||||||||| ||||||| |
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| T |
11873009 |
ggaaaagctatggctaagaaggacatattcattgagtcttttcttttcaaccctccatttccatctgctccaattgaaagaatta |
11872925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 90 - 388
Target Start/End: Original strand, 42050135 - 42050427
Alignment:
| Q |
90 |
gaagtccacgttatgtaattgcgtttcgagggactataaccaaagcagactcagtttcacgtgatattgagttggatctccaatttctcaaaaatggact |
189 |
Q |
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|||||||||||||||| ||||| |||||||| ||| ||||||||||| ||||||||||||||||| ||||||| ||| |||| ||| | | | || || |
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| T |
42050135 |
gaagtccacgttatgtgattgcctttcgaggaactctaaccaaagcacactcagtttcacgtgatgttgagttagatatccattttattcgacagggtct |
42050234 |
T |
|
| Q |
190 |
tcatcgaacttcacgctcagagatagctatcggagctgtgagaaacatggtggctagtgttggtggtaatggttcgaatatatggttggctggtcactct |
289 |
Q |
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||||| |||||||||||| | |||||||| |||||| |||||| ||| || | || || || ||| ||| | ||||| ||||| ||||| |
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| T |
42050235 |
tcatcaaacttcacgctctaacatagctattcaagctgttcgaaacacggtagcaaccgtcgg------tgattcaaatgtttggttagctggacactcc |
42050328 |
T |
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| Q |
290 |
ctaggatctggcatggcattgcttgccgggaaaacattggctaaaaatggcacattcatcgagtcttttctttttaaccctccatttgcatctgctcca |
388 |
Q |
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||||| || | |||||||||||| |||||||||| |||| || ||||||| || || || ||||||||||| ||||||||||||| |||||||||| |
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| T |
42050329 |
ctaggctcagcaatggcattgcttaccgggaaaaccatggccaagaatggcaattttattgaatcttttcttttcaaccctccatttgtatctgctcca |
42050427 |
T |
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