View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14262_low_1 (Length: 628)

Name: NF14262_low_1
Description: NF14262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14262_low_1
NF14262_low_1
[»] chr2 (5 HSPs)
chr2 (19-613)||(2697786-2698363)
chr2 (295-613)||(2689980-2690301)
chr2 (23-186)||(2690451-2690614)
chr2 (21-94)||(2723502-2723575)
chr2 (21-94)||(2745332-2745405)
[»] chr4 (5 HSPs)
chr4 (24-186)||(36290785-36290947)
chr4 (482-595)||(36291107-36291220)
chr4 (23-186)||(14519610-14519773)
chr4 (492-613)||(14519148-14519269)
chr4 (21-113)||(40823639-40823731)
[»] chr8 (2 HSPs)
chr8 (21-140)||(4159599-4159718)
chr8 (72-130)||(4130245-4130303)
[»] chr7 (8 HSPs)
chr7 (21-97)||(20062383-20062459)
chr7 (27-115)||(20231732-20231820)
chr7 (24-115)||(20243801-20243892)
chr7 (21-113)||(20289420-20289512)
chr7 (24-115)||(20264188-20264279)
chr7 (21-100)||(20303867-20303946)
chr7 (21-115)||(20285109-20285203)
chr7 (21-115)||(20294826-20294920)
[»] chr3 (1 HSPs)
chr3 (23-115)||(1091432-1091524)


Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 19 - 613
Target Start/End: Complemental strand, 2698363 - 2697786
Alignment:
Q  19 actgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgtgag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2698363 actgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgtgag 2698264  T
Q  119 cggccgcagaaacactagctttcgtcactcagatgattcgagtctaataggatatgtaagtgtttcctacagcacatatttannnnnnnnaatttaatgc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||        ||||||||||    
T  2698263 cggccgcagaaacactagctttcgtcactcagatgattcgagtctaataggttatgtaagtgtttcctacagcacatatatatttttttaaatttaatgc 2698164  T
Q  219 aacttgcataaatgnnnnnnncctgataaacaatttctcaataataatttttacgagtgaatcaccaattgaatccttgaaaatattttatcacattagt 318  Q
    ||||||||||||||       ||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||    
T  2698163 aacttgcataaatgtttttttcctgataaacaatttctcaataataa-----------------ccaattgaatccttgaaaatattttatcacattagt 2698081  T
Q  319 tcttttgagttcttgaaattcttagaggaattaatactaagctaatcaaaatgctaaaagctaatgttttgtgatgaaatggatgtaggcatggaatctt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2698080 tcttttgagttcttgaaattcttagaggaattaatactaagctaatcgaaatgctaaaagctaatgttttgtgatgaaatggatgcaggcatggaatctt 2697981  T
Q  419 tggaatgaacgcagagcaatgcaacttcttgatccttgcattcgtgattcgagtcctacgaacaaagctttgagatgtatacaaatagggatgttatgtg 518  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2697980 tggaatgaacgcagagcaatggaacttcttgatccttgcattcgtgattcgagtcctacgaacaaagctttgagatgtatacaaatagggatgttatgtg 2697881  T
Q  519 tgcaagattcagcatctcatagaccaaatatgtccaaagttgtgttgttgcttgagagtgaagcaacgactcttcccatacctacgcagcctttg 613  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2697880 tgcaagattcagcatctcatagaccaaatatgtccaaagttgtgttgttgcttgagagtgaagcaacgactcttcccatacctacgcagcctttg 2697786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 295 - 613
Target Start/End: Complemental strand, 2690301 - 2689980
Alignment:
Q  295 ttgaaaatattttatcacattagttcttttgagttcttgaaatt--cttagaggaattaatactaagctaatcaaaatgctaaaagctaatgtt-ttgtg 391  Q
    |||||||| ||||||||||||||| ||||||||  |||||||||  |||||||| | |||||||||||||||  ||||||| |||||||||||| |||||    
T  2690301 ttgaaaatcttttatcacattagtccttttgagcccttgaaattgacttagagggactaatactaagctaattgaaatgcttaaagctaatgttattgtg 2690202  T
Q  392 atgaaatggatgtaggcatggaatctttggaatgaacgcagagcaatgcaacttcttgatccttgcattcgtgattcgagtcctacgaacaaagctttga 491  Q
    ||| ||||||||||||||||| |||| ||||| || |  ||||||||| || || | ||| ||||||||| ||||| |||||| |  |   | |||||||    
T  2690201 atggaatggatgtaggcatggcatctatggaacgatcagagagcaatggaaattgtggatgcttgcattcatgatttgagtcccaacactgaggctttga 2690102  T
Q  492 gatgtatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaatatgtccaaagttgtgttgttgcttgagagtgaagcaacgactct 591  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |  |||| | | ||||||||||||||||||| |||||    
T  2690101 gatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtccgatattgtttcgatgcttgagagtgaagcaacaactct 2690002  T
Q  592 tcccatacctacgcagcctttg 613  Q
    |||| |||||||||||||||||    
T  2690001 tcccttacctacgcagcctttg 2689980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 2690614 - 2690451
Alignment:
Q  23 cagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgtgagcggc 122  Q
    ||||||||||||||||| ||| || |||||| ||||| || |||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||    
T  2690614 cagtggttatatgtctcatgagtatgctatgcaaggcttattttcagtcaagtcagatgtatatagttttggcgtattgctactagagattgtgagtggc 2690515  T
Q  123 cgcagaaacactagctttcgtcactcagatgattcgagtctaataggatatgtaagtgtttcct 186  Q
    |||| ||||||||||||| || | |||||  |||| ||||| ||||||||||| ||| ||||||    
T  2690514 cgcaaaaacactagctttggtgattcagaatattcaagtctcataggatatgtgagtatttcct 2690451  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 2723575 - 2723502
Alignment:
Q  21 tgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttgg 94  Q
    |||||||| || |||||||| ||||| || |||||||| ||  ||||||  ||||||||||||| |||||||||    
T  2723575 tgcagtggatacatgtctccggaatatgcaatggaagggctgttttcagagaaatcagatgtatttagttttgg 2723502  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 2745405 - 2745332
Alignment:
Q  21 tgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttgg 94  Q
    |||||||| || |||||||| ||||| || |||||||| ||  ||||||  ||||||||||||| |||||||||    
T  2745405 tgcagtggatacatgtctccggaatatgcaatggaagggctgttttcagagaaatcagatgtatttagttttgg 2745332  T

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Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 24 - 186
Target Start/End: Original strand, 36290785 - 36290947
Alignment:
Q  24 agtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgtgagcggcc 123  Q
    ||||| ||||||||||| |||||||| ||||| || ||| ||||||||||||| ||||||||||||||||| ||| | ||||||||||||||||| ||||    
T  36290785 agtggatatatgtctccagaatacgcaatggagggtctattttcagtcaaatctgatgtatatagttttggcgtacttctactagagattgtgagtggcc 36290884  T
Q  124 gcagaaacactagctttcgtcactcagatgattcgagtctaataggatatgtaagtgtttcct 186  Q
    ||| |||||||||||||||| | ||  ||||| | ||||| ||||||||||| ||||| ||||    
T  36290885 gcaaaaacactagctttcgtgattcgtatgatccaagtctcataggatatgtgagtgtctcct 36290947  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 482 - 595
Target Start/End: Original strand, 36291107 - 36291220
Alignment:
Q  482 aaagctttgagatgtatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaatatgtccaaagttgtgttgttgcttgagagtgaag 581  Q
    |||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||  ||| |||||| ||||||| |||||||    
T  36291107 aaagctttgagatgcatccacatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtcctcagtggtgttgatgcttgaaagtgaag 36291206  T
Q  582 caacgactcttccc 595  Q
    |||| |||||||||    
T  36291207 caacaactcttccc 36291220  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 14519773 - 14519610
Alignment:
Q  23 cagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgtgagcggc 122  Q
    |||||||||||||||||||||||| || ||| ||||| || | ||||  ||| |||| |||||||||||||| ||||| ||||| ||||||||||| ||     
T  14519773 cagtggttatatgtctcctgaatatgccatgcaaggcgtattatcagctaaagcagacgtatatagttttggcgtattgctactggagattgtgagtggt 14519674  T
Q  123 cgcagaaacactagctttcgtcactcagatgattcgagtctaataggatatgtaagtgtttcct 186  Q
    | || |||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||| ||||||    
T  14519673 cacaaaaacaccagctttcgtcattcagatgattcaagtctcataggatatgtgagtatttcct 14519610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 492 - 613
Target Start/End: Complemental strand, 14519269 - 14519148
Alignment:
Q  492 gatgtatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaatatgtccaaagttgtgttgttgcttgagagtgaagcaacgactct 591  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||   ||||||| |||||| || |||||||| ||||||||||| || |||  |||||    
T  14519269 gatgcatacaaatagggatgttatgtgtgcaagatttagcatctcgacgaccaaagatgtccgaaattgtgttgatgcttgagagtaaatcaattactct 14519170  T
Q  592 tcccatacctacgcagcctttg 613  Q
    |||| |||||| ||||||||||    
T  14519169 tcccttacctatgcagcctttg 14519148  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 40823731 - 40823639
Alignment:
Q  21 tgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagatt 113  Q
    ||||| ||||||||||| |||||||| || ||| |||| ||  ||||||  ||||||||||| | ||| |||||||| ||  |||||||||||    
T  40823731 tgcagcggttatatgtcccctgaatatgcgatgcaaggactgttttcagagaaatcagatgtctttagctttggtgttttgatactagagatt 40823639  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 4159718 - 4159599
Alignment:
Q  21 tgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgtgagcg 120  Q
    ||||||||||||||| | |||||||| || |||||||| ||  |||| |  ||||||||||| ||||| ||||| || ||| |  |||||||||| ||||    
T  4159718 tgcagtggttatatgccgcctgaatatgcaatggaaggacttttttctgagaaatcagatgtttatagctttggagttttattgttagagattgttagcg 4159619  T
Q  121 gccgcagaaacactagcttt 140  Q
    |||| ||||||| |||||||    
T  4159618 gccgaagaaacagtagcttt 4159599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 4130303 - 4130245
Alignment:
Q  72 aaatcagatgtatatagttttggtgtattactactagagattgtgagcggccgcagaaa 130  Q
    ||||||||||||||||| |||||||| ||| | ||||||||||| ||||| || |||||    
T  4130303 aaatcagatgtatatagctttggtgttttattgctagagattgtaagcggacgaagaaa 4130245  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 20062459 - 20062383
Alignment:
Q  21 tgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgt 97  Q
    ||||||||||||||||||||||||||||| ||| |||| ||  ||||||  ||||||||||| | ||| ||||||||    
T  20062459 tgcagtggttatatgtctcctgaatacgcaatgcaaggacttttttcagagaaatcagatgtttttagctttggtgt 20062383  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 20231732 - 20231820
Alignment:
Q  27 ggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgt 115  Q
    ||||| |||||||||||||| || ||| ||||  || ||||||  ||||||||||| | ||| ||||||||||| ||||||||||||||    
T  20231732 ggttacatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgtattgctactagagattgt 20231820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 20243801 - 20243892
Alignment:
Q  24 agtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgt 115  Q
    ||||| || |||||||||||||| || ||| ||||  || ||||||  ||||||||||| | ||| ||||||||||| ||||||||||||||    
T  20243801 agtggctacatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgtattgctactagagattgt 20243892  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 20289420 - 20289512
Alignment:
Q  21 tgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagatt 113  Q
    |||||||||||||| ||||| |||||||| ||| |||| ||  ||||||  ||||||||||| | ||| |||||||| ||  |||||||||||    
T  20289420 tgcagtggttatatatctcccgaatacgcaatgcaaggactgttttcagagaaatcagatgtctttagctttggtgttttgttactagagatt 20289512  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 20264188 - 20264279
Alignment:
Q  24 agtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgt 115  Q
    |||||||| |||||||| ||||| || ||| ||||  || ||||||  || |||||||| | ||| ||||||||||| ||||||||||||||    
T  20264188 agtggttacatgtctcccgaatatgcaatgcaaggattattttcagagaagtcagatgtttttagctttggtgtattgctactagagattgt 20264279  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 20303867 - 20303946
Alignment:
Q  21 tgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtatt 100  Q
    |||||||| |||||||||||||||||||| |||  ||| ||  ||||||  ||||||||||| | ||| |||||||||||    
T  20303867 tgcagtggctatatgtctcctgaatacgcaatgcgaggacttttttcagagaaatcagatgtttttagctttggtgtatt 20303946  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 20285109 - 20285203
Alignment:
Q  21 tgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgt 115  Q
    |||||||| ||||||||||| ||||| || ||| ||||  || ||||||  ||||||||| | | |||||||||||| ||  |||||||||||||    
T  20285109 tgcagtggctatatgtctccggaatatgcaatgcaaggattattttcagagaaatcagatttttttagttttggtgttttgatactagagattgt 20285203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 20294826 - 20294920
Alignment:
Q  21 tgcagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgt 115  Q
    |||||||| ||||||||||||||||| || ||| ||||  || ||||||  ||||||||||| | ||| |||||||| ||  | |||||||||||    
T  20294826 tgcagtggctatatgtctcctgaatatgcaatgcaaggattattttcagagaaatcagatgtttttagctttggtgttttgatgctagagattgt 20294920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 1091432 - 1091524
Alignment:
Q  23 cagtggttatatgtctcctgaatacgctatggaaggcctagtttcagtcaaatcagatgtatatagttttggtgtattactactagagattgt 115  Q
    ||||||||||||| |||| |||||||| || || || ||| ||||    ||||| ||||||| ||| |||||||||||| |||||||||||||    
T  1091432 cagtggttatatggctccagaatacgccattgatggactattttctacaaaatctgatgtatttagctttggtgtattattactagagattgt 1091524  T

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