View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14262_low_11 (Length: 275)
Name: NF14262_low_11
Description: NF14262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14262_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 27 - 275
Target Start/End: Complemental strand, 21624113 - 21623864
Alignment:
| Q |
27 |
gcattaccaactcatttccaagctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttga |
126 |
Q |
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| T |
21624113 |
gcattaccaactcatttccaagctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttga |
21624014 |
T |
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| Q |
127 |
ttctttcatctcactttcttcctccatctctttatttcagatcaattcc-aaccttcacaatttgtatgcacaacacctatatatagagaaatgtagaag |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21624013 |
ttctttcatctcactttcttcctccatctctttatttcagatcaattccaaaccttcacaatttgtatgcacaacacctatatatagagaaatgtagaag |
21623914 |
T |
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| Q |
226 |
catgattacatgatgagcaataacgatgatgactccttacaaattgtaca |
275 |
Q |
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| T |
21623913 |
catgattacatgatgagcaatagcgatgatgactccttacaaattgtaca |
21623864 |
T |
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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 40466130 - 40466228
Alignment:
| Q |
29 |
attaccaactcatttccaagctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttgat |
127 |
Q |
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| T |
40466130 |
attaccaattcttttccaagttcaatagcagcatccttatagctagttttgttaccagggctactaccacaaaacacacaaattctcttaaactttgat |
40466228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 28271927 - 28272022
Alignment:
| Q |
31 |
taccaactcatttccaagctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttga |
126 |
Q |
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|||||| ||||||||||| ||||| |||||||||| ||| ||||| || || ||||||||||| |||||||| ||||||| |||||| |||||||| |
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| T |
28271927 |
taccaattcatttccaagttcaatggcagcatcttgataactacttttcttgccaggactacttccacaaaagacacaaaccctcttgaactttga |
28272022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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