View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14262_low_12 (Length: 269)

Name: NF14262_low_12
Description: NF14262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14262_low_12
NF14262_low_12
[»] chr1 (2 HSPs)
chr1 (163-250)||(14881393-14881480)
chr1 (92-165)||(14881230-14881303)
[»] chr3 (2 HSPs)
chr3 (163-250)||(10671742-10671828)
chr3 (97-163)||(10671583-10671650)


Alignment Details
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 14881393 - 14881480
Alignment:
Q  163 tgcggggaaaacaaatatggaattgaaggtttgcatacttcgtatttgggatgtaacttcgagaaaaaatcattcagaaattacctat 250  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  14881393 tgcggggaaaacaaatatggaattgaaggttcgcatacttcgtatttgggatgtaaattcgagaaaaaatcattcagaagttacctat 14881480  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 14881230 - 14881303
Alignment:
Q  92 cacataaagtctttcagaagctgcaaaattcttacgctaattcacattataatagattacttcaacattgatgc 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14881230 cacataaagtctttcagaagctgcaaaattcttacgctaattcacattataatagatcacttcaacattgatgc 14881303  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 10671742 - 10671828
Alignment:
Q  163 tgcggggaaaacaaatatggaattgaaggtttgcatacttcgtatttgggatgtaacttcgagaaaaaatcattcagaaattacctat 250  Q
    |||| ||||| |||||||||||||||||||| || |||||||||| ||||||||||||| ||| ||||||| ||||||| ||||||||    
T  10671742 tgcgcggaaagcaaatatggaattgaaggttcgcgtacttcgtatgtgggatgtaacttggag-aaaaatccttcagaagttacctat 10671828  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 10671583 - 10671650
Alignment:
Q  97 aaagtctttcagaagctgcaaaattcttacg-ctaattcacattataatagattacttcaacattgat 163  Q
    |||||| |||| ||| ||||||||||||||| |||| |||||||||||||||||| || |||| ||||    
T  10671583 aaagtccttcaaaagttgcaaaattcttacgcctaagtcacattataatagattatttaaacactgat 10671650  T

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