View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14262_low_14 (Length: 242)
Name: NF14262_low_14
Description: NF14262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14262_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 5770793 - 5770589
Alignment:
| Q |
15 |
aatatttgaacccagggtgcaattgcatctcccatctgacgtgatgtagcatttttcttacgatatcgaatttttcgctttataccgcaagcgaggcact |
114 |
Q |
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| T |
5770793 |
aatatttaaacccagggtgcaagtgcatctcccatctgacgtgatgtagcattttttttaggatattgagtttttcgctttataccgcaagcgaggcact |
5770694 |
T |
|
| Q |
115 |
ccaatcttgtagatcatcctctgaaccatcatcatacatgactcacactctgagtattaaggcattgatgcgctccaattctttgggtaaatgaatgatg |
214 |
Q |
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| T |
5770693 |
ccaatcttgtagatcatcctctgaactatcatcatacatgactcacactctgagtattaaggcattgatgcgctccaattctttggataaatgaatgatg |
5770594 |
T |
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| Q |
215 |
aaata |
219 |
Q |
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||||| |
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| T |
5770593 |
aaata |
5770589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 5765245 - 5765045
Alignment:
| Q |
15 |
aatatttgaacccagggtgcaattgcatctcccatctgacgtgatgtagcatttttcttacgat----atcgaatttttcgctttataccgcaagcgagg |
110 |
Q |
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|||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||| || || |||||||||||| | ||||||||| |
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| T |
5765245 |
aatacttgaacccggggtgcaagtgcatctcccatctgacgtgatgtagcatttttcttgggatcttaattgagtttttcgctttacattacaagcgagg |
5765146 |
T |
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| Q |
111 |
cactccaatcttgtagatcatcctctgaaccatcatcatacatgactcacactctgagtattaaggcattgatgcgctccaattctttgggtaaatgaat |
210 |
Q |
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| T |
5765145 |
cgctccaatcttgtatatcatcatc------aaca-cgtacatgactcacactctgagtattaaggcattgatgcgctcaaattc-ttgggcagacgaat |
5765054 |
T |
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| Q |
211 |
gatgaaata |
219 |
Q |
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| T |
5765053 |
gatgaaata |
5765045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 63
Target Start/End: Complemental strand, 35338955 - 35338924
Alignment:
| Q |
32 |
tgcaattgcatctcccatctgacgtgatgtag |
63 |
Q |
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| T |
35338955 |
tgcaattgcatctcccatctgacgtgatgtag |
35338924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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