View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14262_low_2 (Length: 561)
Name: NF14262_low_2
Description: NF14262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14262_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Original strand, 3916174 - 3916711
Alignment:
| Q |
1 |
aaacaaagtttataccaaaacaagcaagttataaacgtcggcggcggtggtaacggaaaacctccatacccttcgggttcgtaaacacttccatcctttg |
100 |
Q |
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| T |
3916174 |
aaacaaagtttataccaaaacaagcaagttataaacgtcggcggcggtggtaacggaaaacctccatacccttcgggttcgtaaacacttccatcctttg |
3916273 |
T |
|
| Q |
101 |
gtggttcagctcctctaccggcagcttcggtgtgtccgttcagaatcgccgtaacaaggagaactaaaacaagtgaaccagtgatgggttttgccatagt |
200 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3916274 |
gtggttcagctcctctaccggcagcttcgatgtggccgttcagaatcgccgtaacaaggagaactaaaacaagtgaaccagtgatggtttttgccatagt |
3916373 |
T |
|
| Q |
201 |
gtatataagttactcttgaagnnnnnnnnnnnnnnnnnctcttgtgtttgtatgaataaactgtctccaaaatcactccaatttatagaacttaaggcta |
300 |
Q |
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| T |
3916374 |
gtatataagttactcttgaagttttttt-----------tctcgtgtttgtatgaataaattttctccaaaatcactccaatttatagaacttaaggcta |
3916462 |
T |
|
| Q |
301 |
gagtgatgagaactattgatttcttacaatggaagtgaattaaatttaccttatcttgaggaaattgatattagcaaaagttaatt-aaggtagctgaaa |
399 |
Q |
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||||||||||||||||||||||| || ||| ||||||||||||| |||| ||||| | ||||||||||| ||| |||| |||||| || |||||||||| |
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| T |
3916463 |
gagtgatgagaactattgatttcctaaaatagaagtgaattaaaattacattatcgtaaggaaattgattttaacaaagcttaattgaaagtagctgaaa |
3916562 |
T |
|
| Q |
400 |
aacgtgttgcaagttgcaaccatggttttaaag-attaaggatcatagtttccttttacttatgttgtttaaggttgagcagtttttagttacataagga |
498 |
Q |
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||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | |||| ||||||| |||| |
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| T |
3916563 |
aacgtgttgcaagatgaaaccatggttttaaagtattaaggattttagtttccttttacttatgttgtttaaggttgacatgctttttgttacatgagga |
3916662 |
T |
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| Q |
499 |
ataaatagaaagtaattaagttaaaggatagaataactaatgaatgaat |
547 |
Q |
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| T |
3916663 |
ataaatagaaagtaattatgttaaaggatagaataactaatgaatgaat |
3916711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 5398604 - 5398543
Alignment:
| Q |
139 |
ttcagaatcgccgtaacaaggagaactaaaacaagtgaaccagtgatgggttttgccatagtgta |
203 |
Q |
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|||| |||||||| |||||||||||| |||||||||||| ||| ||| ||||||||||||||| |
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| T |
5398604 |
ttcaaaatcgccgcaacaaggagaaccaaaacaagtgaagcag---tggattttgccatagtgta |
5398543 |
T |
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