View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14262_low_5 (Length: 427)
Name: NF14262_low_5
Description: NF14262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14262_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Original strand, 44466293 - 44466693
Alignment:
| Q |
13 |
aatataatacaacaacagtgataattgcaacaatataattaaagacaaaaaagaccatggatgaggatgcgacaatctaattccttgttcgtgttcatcc |
112 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44466293 |
aatataatacaacaacaatggtaattgcaacaatataattaaagacaaaaaagaccatggatgaggatgagacaatctaattccttgttcgtgttcatcc |
44466392 |
T |
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| Q |
113 |
atgcatttcttcgtatattctctgtcgaataacatgaacatgcctcaccgacatagcgtcaaactcgatcggtattttcaaactatactaactatagaaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
44466393 |
atgcatttcttcgtatattctctgtcgaataacatgaacatgcctcaccaacatagcgtcaaactcgattggtatttttaaactatactaactatagaaa |
44466492 |
T |
|
| Q |
213 |
acatggtccttatgcataaattgttcgaaaacttacatttagaccattcaaatatggtga-nnnnnnnnncatgcatacttcatacatccaaactgatgt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44466493 |
acatggtccttatgcataaattgttcgaaaacttacatttagaccattcaaatatggtgattttttttttcatgcatacttcatacatccaaactgatgt |
44466592 |
T |
|
| Q |
312 |
taggggttcaaagatccatccatggacattatgtttcatctgcatatgattctagccaagagtgtgaaagatgtactaggtcagtgtagaatagttaatt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44466593 |
taggggttcaaagatccatccatggacattatgtttcatctgcatatgattctaaccaagagtgtgaaagatgtactaggtcagtgtagaacagttaatt |
44466692 |
T |
|
| Q |
412 |
a |
412 |
Q |
| |
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| |
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| T |
44466693 |
a |
44466693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 32939651 - 32939708
Alignment:
| Q |
17 |
taatacaacaacagtgataattgcaacaatataattaaagacaaaaaagaccatggat |
74 |
Q |
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| T |
32939651 |
taatacaacaacaataataattgcaacaacataattaaatacaaacaaaatcatggat |
32939708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 30374970 - 30374929
Alignment:
| Q |
25 |
caacagtgataattgcaacaatataattaaagacaaaaaaga |
66 |
Q |
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| T |
30374970 |
caacaatgataattgcaacaatataattaaacacaaacaaga |
30374929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 42625221 - 42625161
Alignment:
| Q |
17 |
taatacaacaacagtgataattgcaacaatataattaaagacaaaaaagaccatggatgag |
77 |
Q |
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||||| ||||||| | |||||||||||| ||||||||| ||||| |||||| |||||||| |
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| T |
42625221 |
taataaaacaacaatagtaattgcaacaacataattaaacacaaacaagaccgtggatgag |
42625161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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