View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14262_low_6 (Length: 424)
Name: NF14262_low_6
Description: NF14262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14262_low_6 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 170 - 424
Target Start/End: Original strand, 18695009 - 18695265
Alignment:
| Q |
170 |
ttaggtcctttacaatttcctaaagacccaattcaggtactaacttaaaaa-tgtcagaattgggccgttaggaaactgcgagggatcaaaatggatctt |
268 |
Q |
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| T |
18695009 |
ttaggtcctttacaatttcctaacgacccaattcaggtactaacttaaaaaatgtcagaattgggccgtcaggaaactgtgagggaccaaaatggatctt |
18695108 |
T |
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| Q |
269 |
tattcgaaagaaaa-aaggcgaaccttggaatcatcatcggtacgaacagctacacattcaggaggagtttcaaaaagagacaaagagaattgtttataa |
367 |
Q |
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| T |
18695109 |
tattcgaaagaaaaaaaggcgaaccttggaatcatcatcggtacgaacagcgacacattcaggaggagtttcaaaaagggacaaagagaattgtttataa |
18695208 |
T |
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| Q |
368 |
gcagcaccaacatcaaagtaaatcaaaccagagctaggaacatcgacactaatactc |
424 |
Q |
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| T |
18695209 |
gcagcaccaacatcaaagtaaatcaaaccagagctaggaacatcgacacgaatactc |
18695265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 18694855 - 18694936
Alignment:
| Q |
16 |
atcacaatcacaaacacaaacacaacaattgaaattgatcatgacaagtatcccaatcaacccttttcccaattcttcctat |
97 |
Q |
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| T |
18694855 |
atcacaatcacaaacacaaatacaacaattgaaattgaccatgacaagtatcccaatcaacccttttcccaattcttcctat |
18694936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 405
Target Start/End: Original strand, 30527065 - 30527133
Alignment:
| Q |
337 |
ttcaaaaagagacaaagagaattgtttataagcagcaccaacatcaaagtaaatcaaaccagagctagg |
405 |
Q |
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| T |
30527065 |
ttcaaagagagacaaagagaattgtttatcagcaacaccaacatcaaagtgaataagaccagagctagg |
30527133 |
T |
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