View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14262_low_7 (Length: 392)
Name: NF14262_low_7
Description: NF14262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14262_low_7 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 392
Target Start/End: Complemental strand, 39641752 - 39641359
Alignment:
| Q |
8 |
gatgaagagattaaggagtgtgaagagcttgggattttggttgatagagatgatcagggtactctgcttcagatttttactaagcccattggagataggt |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39641752 |
gatgaacagattaaggagtgtgaagagcttgggattttggttgatagagatgatcagggtactctgcttcagatttttactaagcccattggagataggt |
39641653 |
T |
|
| Q |
108 |
atatatat---------gctctatttgaatcatttcatatcacacatataacatacatgccaatttattaacttgaattcattattagtagcataccaac |
198 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39641652 |
atatatattatatatatgctctatttgaatcatttcatatcatacatataacatacatgccaatttattaacttgaattcattattagtagcataccaac |
39641553 |
T |
|
| Q |
199 |
gtcaaatataatcaatggtttgagtcaaccggttaataagttttagttaaggttgaatgaatatgagcgcacttgagtttgattgttatctagaacaata |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39641552 |
ttcaaatataatcaatggtttgagtcaaccggttaataagttttagttaaggttgaatgaatatgagcgcacttgagtttgattgttatctagaacaata |
39641453 |
T |
|
| Q |
299 |
actagctagactttactggagtccgcaggaactccggaacccagataattattatcgcatcttagactattatagtagtttgttttgtttgttt |
392 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39641452 |
actagctagactttactggactccgcaggaactccggaatccagataattattatcgcatcttagactattatagtagtttgttttgtttgttt |
39641359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 39680497 - 39680625
Alignment:
| Q |
8 |
gatgaagagattaaggagtgtgaagagcttgggattttggttgatagagatgatcagggtactctgcttcagatttttactaagcccattggagataggt |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
39680497 |
gatgaacagattaaggagtgtgaagagcttgggattctggttgatagagatgatcagggtactctgcttcagatttttaccaagcctattggtgataggt |
39680596 |
T |
|
| Q |
108 |
atatatatgctctatttgaatcatttcat |
136 |
Q |
| |
|
|| |||||||||| || ||||||| |||| |
|
|
| T |
39680597 |
atgtatatgctcttttagaatcatatcat |
39680625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 39637123 - 39637000
Alignment:
| Q |
8 |
gatgaagagattaaggagtgtgaagagctt-gggattttggttgatagagatgatcagggtactctgcttcagatttttactaagcccattggagatagg |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| |
|
|
| T |
39637123 |
gatgaacagattaaggagtgtgaagagctttgggattttggttgatagagatgatcagggtactttgcttcagatttttactaagcctattggtgatagg |
39637024 |
T |
|
| Q |
107 |
tatatatatgctctatttgaatcat |
131 |
Q |
| |
|
||| || ||| ||| |||||||||| |
|
|
| T |
39637023 |
tatgta-atgatctttttgaatcat |
39637000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 7055614 - 7055513
Alignment:
| Q |
8 |
gatgaagagattaaggagtgtgaagagcttgggattttggttgatagagatgatcagggtactctgcttcagatttttactaagcccattggagataggt |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||||| |||||||||||| |
|
|
| T |
7055614 |
gatgaacagattaaggagtgtgaagagcttggaattttggttgatagagatgatcagggtactattcttcagattttcactaagcctgttggagataggt |
7055515 |
T |
|
| Q |
108 |
at |
109 |
Q |
| |
|
|| |
|
|
| T |
7055514 |
at |
7055513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University