View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14263_high_2 (Length: 550)
Name: NF14263_high_2
Description: NF14263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14263_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 20 - 534
Target Start/End: Original strand, 33384792 - 33385306
Alignment:
| Q |
20 |
cataacaagggaaccttttaaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtggga |
119 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33384792 |
cataacaagggaaccttt-aaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtggga |
33384890 |
T |
|
| Q |
120 |
aacaagatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtgga |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33384891 |
aacaagatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtgga |
33384990 |
T |
|
| Q |
220 |
tcgacactggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaagtgttgtcgggacatccgcacat |
319 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
33384991 |
tcgacactggtgcctcacaccatatttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaaatgttgttgggacatccgcacat |
33385090 |
T |
|
| Q |
320 |
cattaaagttgttggaattagagacgtggagttgcaattcacatccc-nnnnnnngttatttctcaaggatgtggtgtatgctactgagataagaaataa |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| | |||||||||||||| |
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| T |
33385091 |
cattaaagttgttggaattagagacgtggagttgcaattcacatcccaaaaaaaagttatttcttaaggatgtgttgtatgctccagagataagaaataa |
33385190 |
T |
|
| Q |
419 |
tctagattctcaatttctaatgaacgaggtgttgatgataatnnnnnnnnntccatcttaaattgatcttttaatgataacaaactttattgaaataaat |
518 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33385191 |
tctagattctcaatttctaatgaacgaggtgttgatgataataaaaaaaaattcatcttaaattgatcttttaatgataacaaactttattgaaataaat |
33385290 |
T |
|
| Q |
519 |
agatcaaggttattct |
534 |
Q |
| |
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|||||||||||||||| |
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| T |
33385291 |
agatcaaggttattct |
33385306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 20 - 460
Target Start/End: Original strand, 33383661 - 33384101
Alignment:
| Q |
20 |
cataacaagggaaccttttaaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtggga |
119 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383661 |
cataacaagggaaccttt-aaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtggga |
33383759 |
T |
|
| Q |
120 |
aacaagatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtgga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33383760 |
aacaagatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtgga |
33383859 |
T |
|
| Q |
220 |
tcgacactggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaagtgttgtcgggacatccgcacat |
319 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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|
| T |
33383860 |
tcgacactggtgcctcacaccatatttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaaatgttgttgggacatccgcacat |
33383959 |
T |
|
| Q |
320 |
cattaaagttgttggaattagagacgtggagttgcaattcacatccc-nnnnnnngttatttctcaaggatgtggtgtatgctactgagataagaaataa |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| | |||||||||||||| |
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| T |
33383960 |
cattaaagttgttggaattagagacgtggagttgcaattcacatcccaaaaaaaagttatttcttaaggatgtgttgtatgctccagagataagaaataa |
33384059 |
T |
|
| Q |
419 |
tctagattctcaatttctaatgaacgaggtgttgatgataat |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33384060 |
tctagattctcaatttctaatgaacgaggtgttgatgataat |
33384101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 460
Target Start/End: Original strand, 33384228 - 33384668
Alignment:
| Q |
20 |
cataacaagggaaccttttaaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtggga |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33384228 |
cataacaagggaaccttt-aaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtggga |
33384326 |
T |
|
| Q |
120 |
aacaagatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtgga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33384327 |
aacaagatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtgga |
33384426 |
T |
|
| Q |
220 |
tcgacactggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaagtgttgtcgggacatccgcacat |
319 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |
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|
| T |
33384427 |
tcgacactggtgcctcacaccatatttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaaatgttgttgggacatccacacat |
33384526 |
T |
|
| Q |
320 |
cattaaagttgttggaattagagacgtggagttgcaattcacatccc-nnnnnnngttatttctcaaggatgtggtgtatgctactgagataagaaataa |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| | |||||||||||||| |
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|
| T |
33384527 |
cattaaagttgttggaattagagacgtggagttgcaattcacatcccaaaaaaaagttatttcttaaggatgtgttgtatgctccagagataagaaataa |
33384626 |
T |
|
| Q |
419 |
tctagattctcaatttctaatgaacgaggtgttgatgataat |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33384627 |
tctagattctcaatttctaatgaacgaggtgttgatgataat |
33384668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 350
Target Start/End: Original strand, 33090583 - 33090747
Alignment:
| Q |
186 |
atcaactatgttggtggatcaaattgttagtggatcgacactggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacatacaaaggtgctc |
285 |
Q |
| |
|
||||||| ||||||||||| || | | |||||| |||||||| ||||| | ||||||||||| ||| | |||||||||||| ||||||| |||| |
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|
| T |
33090583 |
atcaacttagttggtggatctgatggatggtggatagacactggcgcctctcgccatgtttgttttgaccgtgctatgtttaagacatacactactgctg |
33090682 |
T |
|
| Q |
286 |
aagatatgaaagtgttgtcgggacatccgcacatcattaaagttgttggaattagagacgtggag |
350 |
Q |
| |
|
| ||| |||||||||| |||| || | |||| || |||||||| ||||||| |||| |||||| |
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|
| T |
33090683 |
atgatcagaaagtgttgctgggagattctcacaccactaaagttgctggaattggagaagtggag |
33090747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 474 - 525
Target Start/End: Complemental strand, 19412304 - 19412253
Alignment:
| Q |
474 |
tcttaaattgatcttttaatgataacaaactttattgaaataaatagatcaa |
525 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| ||||||||||| ||||||| |
|
|
| T |
19412304 |
tcttaaattgatgttttaaggataacaaacttcattgaaataaagagatcaa |
19412253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 13583922 - 13584003
Alignment:
| Q |
195 |
gttggtggatcaaattgttagtggatcgacactggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacataca |
276 |
Q |
| |
|
||||||||||| || | | |||||| |||||||| ||||| | ||||||||||||||| | ||||||||| || ||||||| |
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|
| T |
13583922 |
gttggtggatctgatggatggtggatagacactggcgcctctcgccatgtttgttatgaccgtgctatgttcaagacataca |
13584003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 474 - 525
Target Start/End: Complemental strand, 10014730 - 10014679
Alignment:
| Q |
474 |
tcttaaattgatcttttaatgataacaaactttattgaaataaatagatcaa |
525 |
Q |
| |
|
|||||| ||| | ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10014730 |
tcttaagttggtattttaatgataacaaacttcattgaaataaatagatcaa |
10014679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 534
Target Start/End: Original strand, 17775316 - 17775376
Alignment:
| Q |
474 |
tcttaaattgatcttttaatgataacaaactttattgaaataaatagatcaaggttattct |
534 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||| |||||| |||| ||||||| ||||||| |
|
|
| T |
17775316 |
tcttaagttgatgttttactgataacaaacttaattgaattaaagagatcaatattattct |
17775376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 525
Target Start/End: Complemental strand, 20421515 - 20421479
Alignment:
| Q |
489 |
ttaatgataacaaactttattgaaataaatagatcaa |
525 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
20421515 |
ttaatgataacaaacttcatttaaataaatagatcaa |
20421479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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