View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14263_low_10 (Length: 250)
Name: NF14263_low_10
Description: NF14263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14263_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 2237512 - 2237737
Alignment:
| Q |
16 |
cagagtagagatttccagtggcaatatagacatgttttctataaacatcaatggaaggactacttccccaaatggcagctccagcatattcacctatctt |
115 |
Q |
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| T |
2237512 |
cagagtagagatttccggtggcaatatagacatgttttcgataaacatcaatggaaggactacttccccaaatggcagctccagcatatgctcctatctt |
2237611 |
T |
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| Q |
116 |
tccattattatctggtaacatataggttttccataagatggcaccagtttgagcatcaagttttgcaagacttccacgaaatatgcagcaatcttcaatg |
215 |
Q |
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| T |
2237612 |
tccgttgttatccggtaacatataggttttccataagatgtcgccggtttgagcatcaagttttacaagacttccacgaaatatgcaacaatctttaatg |
2237711 |
T |
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| Q |
216 |
gctacaccttcttctagtgatgatgt |
241 |
Q |
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| T |
2237712 |
gttgcaccttcttctagtgaagatgt |
2237737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 2260983 - 2260847
Alignment:
| Q |
26 |
atttccagtggcaatatagacatgttttctataaacatcaatggaaggactacttccccaaatggcagctccagcatattcacctatctttccattatta |
125 |
Q |
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||||||||||||||| || | ||| ||||| | ||||||| | |||||||||||||| || || | |||| |||||||||| | || ||||| ||| |
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| T |
2260983 |
atttccagtggcaatgtatatatggtttcttgatgcatcaattggtggactacttccccatatagctccaccagaatattcacctcttttgccattgtta |
2260884 |
T |
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| Q |
126 |
tctggtaacatataggttttccataagatggcaccag |
162 |
Q |
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| T |
2260883 |
tcaggtaacatatatgttttccataaaatggcaccag |
2260847 |
T |
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